RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 AMPHP49418 695 aa27.43■■□□□ 1.98
SMPDL3A-202ENST00000487215 SHANK3Q9BYB0 1731 aa27.43■■□□□ 1.98
SMPDL3A-202ENST00000487215 CHD4Q14839 1912 aa27.43■■□□□ 1.98
SMPDL3A-202ENST00000487215 COL24A1Q17RW2 1714 aa27.42■■□□□ 1.98
SMPDL3A-202ENST00000487215 POLD1P28340 1107 aa27.41■■□□□ 1.98
SMPDL3A-202ENST00000487215 ZCRB1Q8TBF4 217 aaKnown RBP27.41■■□□□ 1.98
SMPDL3A-202ENST00000487215 TFCP2L1Q9NZI6 479 aa27.41■■□□□ 1.98
SMPDL3A-202ENST00000487215 TUBGCP6Q96RT7 1819 aa27.41■■□□□ 1.98
SMPDL3A-202ENST00000487215 LY75O60449 1722 aa27.41■■□□□ 1.98
SMPDL3A-202ENST00000487215 RGPD2P0DJD1 1756 aa27.4■■□□□ 1.98
SMPDL3A-202ENST00000487215 KLHL34Q8N239 644 aa27.4■■□□□ 1.98
SMPDL3A-202ENST00000487215 GPR162Q16538 588 aa27.39■■□□□ 1.98
SMPDL3A-202ENST00000487215 RTL1A6NKG5 1358 aa27.38■■□□□ 1.97
SMPDL3A-202ENST00000487215 RRS1Q15050 365 aaKnown RBP27.35■■□□□ 1.97
SMPDL3A-202ENST00000487215 NBPF6Q5VWK0 638 aa27.35■■□□□ 1.97
SMPDL3A-202ENST00000487215 NBPF4Q96M43 638 aa27.35■■□□□ 1.97
SMPDL3A-202ENST00000487215 CCNL1Q9UK58 526 aaPredicted RBP27.35■■□□□ 1.97
SMPDL3A-202ENST00000487215 SLC24A1O60721 1099 aa27.34■■□□□ 1.97
SMPDL3A-202ENST00000487215 USHBP1Q8N6Y0 703 aa27.32■■□□□ 1.96
SMPDL3A-202ENST00000487215 NLGN2Q8NFZ4 835 aa27.32■■□□□ 1.96
SMPDL3A-202ENST00000487215 GGNBP2Q9H3C7 697 aa27.32■■□□□ 1.96
SMPDL3A-202ENST00000487215 USP47Q96K76 1375 aa27.32■■□□□ 1.96
SMPDL3A-202ENST00000487215 FYB1O15117 783 aa27.31■■□□□ 1.96
SMPDL3A-202ENST00000487215 C1QTNF8P60827 252 aa27.31■■□□□ 1.96
SMPDL3A-202ENST00000487215 PELP1Q8IZL8 1130 aaKnown RBP27.31■■□□□ 1.96
SMPDL3A-202ENST00000487215 CGNL1Q0VF96 1302 aa27.3■■□□□ 1.96
SMPDL3A-202ENST00000487215 SMG6Q86US8 1419 aaKnown RBP27.3■■□□□ 1.96
SMPDL3A-202ENST00000487215 SENP3-EIF4A1A0A087X0R7 540 aa27.28■■□□□ 1.96
SMPDL3A-202ENST00000487215 COL23A1Q86Y22 540 aaPredicted RBP27.28■■□□□ 1.96
SMPDL3A-202ENST00000487215 RAPGEF4Q8WZA2 1011 aa27.28■■□□□ 1.96
SMPDL3A-202ENST00000487215 MSH5O43196 834 aa27.27■■□□□ 1.96
SMPDL3A-202ENST00000487215 TATP17735 454 aaPredicted RBP27.25■■□□□ 1.95
SMPDL3A-202ENST00000487215 TMF1P82094 1093 aa27.25■■□□□ 1.95
SMPDL3A-202ENST00000487215 INSRP06213 1382 aa27.24■■□□□ 1.95
SMPDL3A-202ENST00000487215 HSP90AB2PQ58FF8 381 aa27.24■■□□□ 1.95
SMPDL3A-202ENST00000487215 PCDH11XQ9BZA7 1347 aa27.23■■□□□ 1.95
SMPDL3A-202ENST00000487215 PCDH11YQ9BZA8 1340 aa27.23■■□□□ 1.95
SMPDL3A-202ENST00000487215 C5P01031 1676 aa27.23■■□□□ 1.95
SMPDL3A-202ENST00000487215 FLT4P35916 1363 aa27.22■■□□□ 1.95
SMPDL3A-202ENST00000487215 MSL1Q68DK7 614 aa27.22■■□□□ 1.95
SMPDL3A-202ENST00000487215 GOLGB1Q14789 3259 aaKnown RBP27.21■■□□□ 1.95
SMPDL3A-202ENST00000487215 YBX3P16989 372 aaKnown RBP eCLIP27.21■■□□□ 1.95
SMPDL3A-202ENST00000487215 PALLDQ8WX93 1383 aa27.21■■□□□ 1.95
SMPDL3A-202ENST00000487215 KIF20BQ96Q89 1820 aa27.2■■□□□ 1.95
SMPDL3A-202ENST00000487215 KIF24Q5T7B8 1368 aa27.2■■□□□ 1.94
SMPDL3A-202ENST00000487215 GIGYF1O75420 1035 aaPredicted RBP27.19■■□□□ 1.94
SMPDL3A-202ENST00000487215 CYP27B1O15528 508 aa27.17■■□□□ 1.94
SMPDL3A-202ENST00000487215 GRIN3BO60391 1043 aa27.17■■□□□ 1.94
SMPDL3A-202ENST00000487215 MPRIPQ6WCQ1 1025 aa27.17■■□□□ 1.94
SMPDL3A-202ENST00000487215 TOGARAM1Q9Y4F4 1720 aa27.16■■□□□ 1.94
SMPDL3A-202ENST00000487215 TAF1LQ8IZX4 1826 aa27.15■■□□□ 1.94
SMPDL3A-202ENST00000487215 FLAD1Q8NFF5 587 aa27.14■■□□□ 1.94
SMPDL3A-202ENST00000487215 HMGB2P26583 209 aaKnown RBP27.13■■□□□ 1.93
SMPDL3A-202ENST00000487215 CDCA8Q53HL2 280 aa27.13■■□□□ 1.93
SMPDL3A-202ENST00000487215 EMILIN1Q9Y6C2 1016 aa27.13■■□□□ 1.93
SMPDL3A-202ENST00000487215 C4BP0C0L5 1744 aa27.13■■□□□ 1.93
SMPDL3A-202ENST00000487215 PKD1L3Q7Z443 1732 aa27.13■■□□□ 1.93
SMPDL3A-202ENST00000487215 CARD14Q9BXL6 1004 aa27.12■■□□□ 1.93
SMPDL3A-202ENST00000487215 CD2APQ9Y5K6 639 aa27.12■■□□□ 1.93
SMPDL3A-202ENST00000487215 NCAPD2Q15021 1401 aa27.11■■□□□ 1.93
SMPDL3A-202ENST00000487215 NSD3Q9BZ95 1437 aa27.11■■□□□ 1.93
SMPDL3A-202ENST00000487215 SMARCC1Q92922 1105 aaPredicted RBP27.11■■□□□ 1.93
SMPDL3A-202ENST00000487215 AMIGO3Q86WK7 504 aa27.1■■□□□ 1.93
SMPDL3A-202ENST00000487215 ITGB4P16144 1822 aa27.09■■□□□ 1.93
SMPDL3A-202ENST00000487215 AK7Q96M32 723 aa27.09■■□□□ 1.93
SMPDL3A-202ENST00000487215 PIGBQ92521 554 aa27.08■■□□□ 1.93
SMPDL3A-202ENST00000487215 ATP10DQ9P241 1426 aa27.07■■□□□ 1.92
SMPDL3A-202ENST00000487215 NKX1-1Q15270 411 aaPredicted RBP27.06■■□□□ 1.92
SMPDL3A-202ENST00000487215 ANKRD26Q9UPS8 1709 aa27.06■■□□□ 1.92
SMPDL3A-202ENST00000487215 PPM1GO15355 546 aaPredicted RBP27.05■■□□□ 1.92
SMPDL3A-202ENST00000487215 SMIM5Q71RC9 77 aa27.05■■□□□ 1.92
SMPDL3A-202ENST00000487215 PHF14O94880 888 aa27.04■■□□□ 1.92
SMPDL3A-202ENST00000487215 SPG7Q9UQ90 795 aa27.04■■□□□ 1.92
SMPDL3A-202ENST00000487215 UBR3Q6ZT12 1888 aa27.04■■□□□ 1.92
SMPDL3A-202ENST00000487215 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.03■■□□□ 1.92
SMPDL3A-202ENST00000487215 MAP2P11137 1827 aaKnown RBP27.02■■□□□ 1.92
SMPDL3A-202ENST00000487215 WASHC2AQ641Q2 1341 aa27.02■■□□□ 1.92
SMPDL3A-202ENST00000487215 LOC102724428A0A0B4J2F2 783 aa27.01■■□□□ 1.91
SMPDL3A-202ENST00000487215 SIK1P57059 783 aa27.01■■□□□ 1.91
SMPDL3A-202ENST00000487215 LINC00116Q8NCU8 138 aa27.01■■□□□ 1.91
SMPDL3A-202ENST00000487215 EYA1Q99502 592 aa27.01■■□□□ 1.91
SMPDL3A-202ENST00000487215 SSFA2P28290 1259 aa27■■□□□ 1.91
SMPDL3A-202ENST00000487215 ADCY9O60503 1353 aa26.99■■□□□ 1.91
SMPDL3A-202ENST00000487215 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.99■■□□□ 1.91
SMPDL3A-202ENST00000487215 TMOD3Q9NYL9 352 aa26.99■■□□□ 1.91
SMPDL3A-202ENST00000487215 IGSF1Q8N6C5 1336 aa26.98■■□□□ 1.91
SMPDL3A-202ENST00000487215 ASAP1Q9ULH1 1129 aa26.97■■□□□ 1.91
SMPDL3A-202ENST00000487215 PHKG2P15735 406 aa26.96■■□□□ 1.91
SMPDL3A-202ENST00000487215 ITPK1Q13572 414 aa26.96■■□□□ 1.91
SMPDL3A-202ENST00000487215 WWC3Q9ULE0 1092 aa26.96■■□□□ 1.91
SMPDL3A-202ENST00000487215 GPBP1L1Q9HC44 474 aaPredicted RBP26.95■■□□□ 1.9
SMPDL3A-202ENST00000487215 POLKQ9UBT6 870 aa26.95■■□□□ 1.9
SMPDL3A-202ENST00000487215 GNPATO15228 680 aa26.94■■□□□ 1.9
SMPDL3A-202ENST00000487215 IFNL2Q8IZJ0 200 aa26.94■■□□□ 1.9
SMPDL3A-202ENST00000487215 ATP6V1AP38606 617 aa26.93■■□□□ 1.9
SMPDL3A-202ENST00000487215 ATG3Q9NT62 314 aa26.92■■□□□ 1.9
SMPDL3A-202ENST00000487215 ZNF526Q8TF50 670 aaPredicted RBP26.91■■□□□ 1.9
SMPDL3A-202ENST00000487215 EIF4A2Q14240 407 aaKnown RBP26.9■■□□□ 1.9
SMPDL3A-202ENST00000487215 CEP350Q5VT06 3117 aa26.88■■□□□ 1.89
SMPDL3A-202ENST00000487215 KDRP35968 1356 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms