RNA–Protein interactions for RNA: ENST00000486254.3

PKP4-213, Transcript of plakophilin 4, humanhuman

TSL 2

Gene PKP4, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-213ENST00000486254 MAP3K5Q99683 1374 aa15.25■□□□□ 0.03
PKP4-213ENST00000486254 LMO7Q8WWI1 1683 aa15.24■□□□□ 0.03
PKP4-213ENST00000486254 ABCC4O15439 1325 aa15.24■□□□□ 0.03
PKP4-213ENST00000486254 FAM83GA6ND36 823 aa15.24■□□□□ 0.03
PKP4-213ENST00000486254 SOX12O15370 315 aa15.24■□□□□ 0.03
PKP4-213ENST00000486254 HDAC1Q13547 482 aaPredicted RBP15.24■□□□□ 0.03
PKP4-213ENST00000486254 MTHFSDQ2M296 383 aaKnown RBP15.24■□□□□ 0.03
PKP4-213ENST00000486254 RTF1Q92541 710 aaKnown RBP15.24■□□□□ 0.03
PKP4-213ENST00000486254 RWDD1Q9H446 243 aaPredicted RBP15.24■□□□□ 0.03
PKP4-213ENST00000486254 XIRP1Q702N8 1843 aaKnown RBP15.24■□□□□ 0.03
PKP4-213ENST00000486254 ATF3P18847 181 aa15.24■□□□□ 0.03
PKP4-213ENST00000486254 API5Q9BZZ5 524 aaKnown RBP15.24■□□□□ 0.03
PKP4-213ENST00000486254 FAM208AQ9UK61 1670 aaKnown RBP15.23■□□□□ 0.03
PKP4-213ENST00000486254 MSH6P52701 1360 aa15.23■□□□□ 0.03
PKP4-213ENST00000486254 PDE4AP27815 886 aa15.23■□□□□ 0.03
PKP4-213ENST00000486254 LAS1LQ9Y4W2 734 aaKnown RBP15.23■□□□□ 0.03
PKP4-213ENST00000486254 CRYBG1Q9Y4K1 1723 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 FOXO3O43524 673 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 IGHDP01880 384 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 GCP02774 474 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 KRT28Q7Z3Y7 464 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 TSPYL6Q8N831 410 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 RBM33Q96EV2 1170 aaKnown RBP15.22■□□□□ 0.03
PKP4-213ENST00000486254 ZBTB40Q9NUA8 1239 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 TNNQ9UQP3 1299 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 PCDHB15Q9Y5E8 787 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 CEMIPQ8WUJ3 1361 aa15.22■□□□□ 0.03
PKP4-213ENST00000486254 NPHP3Q7Z494 1330 aa15.21■□□□□ 0.03
PKP4-213ENST00000486254 GNAT3A8MTJ3 354 aa15.21■□□□□ 0.03
PKP4-213ENST00000486254 NUTM2GQ5VZR2 741 aa15.21■□□□□ 0.03
PKP4-213ENST00000486254 C8orf58Q8NAV2 365 aa15.21■□□□□ 0.03
PKP4-213ENST00000486254 PXDNQ92626 1479 aa15.21■□□□□ 0.02
PKP4-213ENST00000486254 TNS3Q68CZ2 1445 aa15.2■□□□□ 0.02
PKP4-213ENST00000486254 DCTN1Q14203 1278 aa15.2■□□□□ 0.02
PKP4-213ENST00000486254 ITPRIPQ8IWB1 547 aa15.2■□□□□ 0.02
PKP4-213ENST00000486254 TMEM57Q8N5G2 664 aa15.2■□□□□ 0.02
PKP4-213ENST00000486254 PTPRCP08575 1304 aa15.2■□□□□ 0.02
PKP4-213ENST00000486254 MCM10Q7L590 875 aa15.19■□□□□ 0.02
PKP4-213ENST00000486254 ADAMTS7Q9UKP4 1686 aa15.19■□□□□ 0.02
PKP4-213ENST00000486254 FAM161AQ3B820 660 aa15.19■□□□□ 0.02
PKP4-213ENST00000486254 ANP32AP39687 249 aaKnown RBP15.18■□□□□ 0.02
PKP4-213ENST00000486254 RGPD2P0DJD1 1756 aa15.18■□□□□ 0.02
PKP4-213ENST00000486254 COL18A1P39060 1754 aa15.18■□□□□ 0.02
PKP4-213ENST00000486254 N4BP2Q86UW6 1770 aaPredicted RBP15.18■□□□□ 0.02
PKP4-213ENST00000486254 RGS12O14924 1447 aa15.17■□□□□ 0.02
PKP4-213ENST00000486254 KDM3BQ7LBC6 1761 aa15.17■□□□□ 0.02
PKP4-213ENST00000486254 AMOTQ4VCS5 1084 aa15.17■□□□□ 0.02
PKP4-213ENST00000486254 SMC5Q8IY18 1101 aa15.17■□□□□ 0.02
PKP4-213ENST00000486254 CPDO75976 1380 aa15.16■□□□□ 0.02
PKP4-213ENST00000486254 KDM4FA0A1W2PPD8 638 aa15.16■□□□□ 0.02
PKP4-213ENST00000486254 CHMP4AQ9BY43 222 aa15.16■□□□□ 0.02
PKP4-213ENST00000486254 NBPF6Q5VWK0 638 aa15.15■□□□□ 0.02
PKP4-213ENST00000486254 INTS3Q68E01 1043 aaKnown RBP15.15■□□□□ 0.02
PKP4-213ENST00000486254 NBPF4Q96M43 638 aa15.15■□□□□ 0.02
PKP4-213ENST00000486254 TSPYL4Q9UJ04 414 aa15.15■□□□□ 0.02
PKP4-213ENST00000486254 ZBTB7BO15156 539 aaPredicted RBP15.15■□□□□ 0.02
PKP4-213ENST00000486254 HOXB7P09629 217 aa15.15■□□□□ 0.02
PKP4-213ENST00000486254 ERBB3P21860 1342 aa15.14■□□□□ 0.01
PKP4-213ENST00000486254 TAF7Q15545 349 aaPredicted RBP15.14■□□□□ 0.01
PKP4-213ENST00000486254 C8orf34Q49A92 452 aa15.14■□□□□ 0.01
PKP4-213ENST00000486254 PXDNLA1KZ92 1463 aa15.14■□□□□ 0.01
PKP4-213ENST00000486254 HSPA2P54652 639 aa15.13■□□□□ 0.01
PKP4-213ENST00000486254 PLEKHO1Q53GL0 409 aaPredicted RBP15.13■□□□□ 0.01
PKP4-213ENST00000486254 AKAP4Q5JQC9 854 aa15.13■□□□□ 0.01
PKP4-213ENST00000486254 SPATA31A3Q5VYP0 1347 aa15.13■□□□□ 0.01
PKP4-213ENST00000486254 IL17REQ8NFR9 667 aa15.12■□□□□ 0.01
PKP4-213ENST00000486254 SIPA1L3O60292 1781 aaPredicted RBP15.12■□□□□ 0.01
PKP4-213ENST00000486254 RGPD5Q99666 1765 aa15.12■□□□□ 0.01
PKP4-213ENST00000486254 ELL2O00472 640 aaPredicted RBP15.11■□□□□ 0.01
PKP4-213ENST00000486254 ANKRD24Q8TF21 1146 aa15.11■□□□□ 0.01
PKP4-213ENST00000486254 LTV1Q96GA3 475 aaPredicted RBP15.11■□□□□ 0.01
PKP4-213ENST00000486254 XPCQ01831 940 aaPredicted RBP15.11■□□□□ 0.01
PKP4-213ENST00000486254 GCC1Q96CN9 775 aa15.11■□□□□ 0.01
PKP4-213ENST00000486254 IPO9Q96P70 1041 aaKnown RBP15.11■□□□□ 0.01
PKP4-213ENST00000486254 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.11■□□□□ 0.011e-8■□□□□ 9
PKP4-213ENST00000486254 PDZRN3Q9UPQ7 1066 aa15.11■□□□□ 0.01
PKP4-213ENST00000486254 RGS3P49796 1198 aa15.1■□□□□ 0.01
PKP4-213ENST00000486254 CCDC30Q5VVM6 783 aa15.1■□□□□ 0.01
PKP4-213ENST00000486254 NHSL1Q5SYE7 1610 aa15.09■□□□□ 0.01
PKP4-213ENST00000486254 PKD1L3Q7Z443 1732 aa15.09■□□□□ 0.01
PKP4-213ENST00000486254 SOS2Q07890 1332 aaPredicted RBP15.09■□□□□ 0.01
PKP4-213ENST00000486254 SKAP1Q86WV1 359 aa15.08■□□□□ 0
PKP4-213ENST00000486254 STK31Q9BXU1 1019 aa15.08■□□□□ 0
PKP4-213ENST00000486254 KRT24Q2M2I5 525 aa15.07■□□□□ 0
PKP4-213ENST00000486254 BRINP3Q76B58 766 aa15.07■□□□□ 0
PKP4-213ENST00000486254 USHBP1Q8N6Y0 703 aa15.07■□□□□ 0
PKP4-213ENST00000486254 ABCA3Q99758 1704 aa15.07■□□□□ 0
PKP4-213ENST00000486254 PARP4Q9UKK3 1724 aaKnown RBP15.07■□□□□ 0
PKP4-213ENST00000486254 SCN11AQ9UI33 1791 aa15.07■□□□□ 0
PKP4-213ENST00000486254 ATP10DQ9P241 1426 aa15.07■□□□□ 0
PKP4-213ENST00000486254 CCT4P50991 539 aaKnown RBP15.07■□□□□ 0
PKP4-213ENST00000486254 NUCB1Q02818 461 aa15.07■□□□□ 0
PKP4-213ENST00000486254 LMOD2Q6P5Q4 547 aa15.07■□□□□ 0
PKP4-213ENST00000486254 ZNF530Q6P9A1 599 aaPredicted RBP15.07■□□□□ 0
PKP4-213ENST00000486254 MRC1P22897 1456 aa15.06■□□□□ 0
PKP4-213ENST00000486254 SLC4A2P04920 1241 aa15.06■□□□□ 0
PKP4-213ENST00000486254 C1orf141Q5JVX7 400 aa15.06■□□□□ 0
PKP4-213ENST00000486254 LRRC59Q96AG4 307 aaKnown RBP15.06■□□□□ 0
PKP4-213ENST00000486254 DDRGK1Q96HY6 314 aa15.06■□□□□ 0
PKP4-213ENST00000486254 AXIN2Q9Y2T1 843 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms