RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 ERBB3P21860 1342 aa9.74□□□□□ -0.85
VPS50-218ENST00000485994 DISP2A7MBM2 1401 aa9.73□□□□□ -0.85
VPS50-218ENST00000485994 BCL9O00512 1426 aa9.73□□□□□ -0.85
VPS50-218ENST00000485994 DDB1Q16531 1140 aa9.73□□□□□ -0.85
VPS50-218ENST00000485994 DEFB132Q7Z7B7 95 aa9.73□□□□□ -0.85
VPS50-218ENST00000485994 CARD14Q9BXL6 1004 aa9.73□□□□□ -0.85
VPS50-218ENST00000485994 ZBTB7CA1YPR0 619 aa9.72□□□□□ -0.85
VPS50-218ENST00000485994 EXOC5O00471 708 aa9.72□□□□□ -0.85
VPS50-218ENST00000485994 SOX12O15370 315 aa9.72□□□□□ -0.85
VPS50-218ENST00000485994 HSPA5P11021 654 aaKnown RBP9.72□□□□□ -0.85
VPS50-218ENST00000485994 CAMKK2Q96RR4 588 aa9.72□□□□□ -0.85
VPS50-218ENST00000485994 LTN1O94822 1766 aa9.71□□□□□ -0.85
VPS50-218ENST00000485994 CSB-PGBD3P0DP91 1061 aa9.71□□□□□ -0.86
VPS50-218ENST00000485994 FAM182BQ5T319 152 aa9.71□□□□□ -0.86
VPS50-218ENST00000485994 ANKRD24Q8TF21 1146 aa9.71□□□□□ -0.86
VPS50-218ENST00000485994 MAP3K19Q56UN5 1328 aa9.71□□□□□ -0.86
VPS50-218ENST00000485994 KIF24Q5T7B8 1368 aa9.71□□□□□ -0.86
VPS50-218ENST00000485994 RGPD1P0DJD0 1748 aa9.7□□□□□ -0.86
VPS50-218ENST00000485994 PLSCR1O15162 318 aa9.7□□□□□ -0.86
VPS50-218ENST00000485994 TRIM37O94972 964 aa9.7□□□□□ -0.86
VPS50-218ENST00000485994 HOXC9P31274 260 aa9.7□□□□□ -0.86
VPS50-218ENST00000485994 MARCH10Q8NA82 808 aaPredicted RBP9.7□□□□□ -0.86
VPS50-218ENST00000485994 TSPYL2Q9H2G4 693 aaPredicted RBP9.7□□□□□ -0.86
VPS50-218ENST00000485994 TRPC6Q9Y210 931 aa9.7□□□□□ -0.86
VPS50-218ENST00000485994 PARD3Q8TEW0 1356 aa9.7□□□□□ -0.86
VPS50-218ENST00000485994 RTL1A6NKG5 1358 aa9.69□□□□□ -0.86
VPS50-218ENST00000485994 APBA3O96018 575 aa9.69□□□□□ -0.86
VPS50-218ENST00000485994 IL2RBP14784 551 aa9.69□□□□□ -0.86
VPS50-218ENST00000485994 AMPHP49418 695 aa9.69□□□□□ -0.86
VPS50-218ENST00000485994 ATN1P54259 1190 aaPredicted RBP9.69□□□□□ -0.86
VPS50-218ENST00000485994 EN1Q05925 392 aaPredicted RBP9.69□□□□□ -0.86
VPS50-218ENST00000485994 FAM163AQ96GL9 167 aaPredicted RBP9.69□□□□□ -0.86
VPS50-218ENST00000485994 BCL11BQ9C0K0 894 aaPredicted RBP9.69□□□□□ -0.86
VPS50-218ENST00000485994 GGNBP2Q9H3C7 697 aa9.69□□□□□ -0.86
VPS50-218ENST00000485994 NLRP2Q9NX02 1062 aa9.69□□□□□ -0.86
VPS50-218ENST00000485994 KAT6BQ8WYB5 2073 aa9.68□□□□□ -0.86
VPS50-218ENST00000485994 SBF2Q86WG5 1849 aa9.68□□□□□ -0.86
VPS50-218ENST00000485994 PEAK1Q9H792 1746 aa9.68□□□□□ -0.86
VPS50-218ENST00000485994 OVOS2A0A0G2JMS6 1433 aa9.68□□□□□ -0.86
VPS50-218ENST00000485994 CGNL1Q0VF96 1302 aa9.68□□□□□ -0.86
VPS50-218ENST00000485994 POTEFA5A3E0 1075 aa9.68□□□□□ -0.86
VPS50-218ENST00000485994 FBLN1P23142 703 aa9.68□□□□□ -0.86
VPS50-218ENST00000485994 MYOM1P52179 1685 aa9.67□□□□□ -0.86
VPS50-218ENST00000485994 SLC39A7Q92504 469 aa9.67□□□□□ -0.86
VPS50-218ENST00000485994 WNK3Q9BYP7 1800 aa9.67□□□□□ -0.86
VPS50-218ENST00000485994 INSRP06213 1382 aa9.66□□□□□ -0.86
VPS50-218ENST00000485994 TNS1Q9HBL0 1735 aaKnown RBP9.66□□□□□ -0.86
VPS50-218ENST00000485994 EZH2Q15910 746 aaKnown RBP9.66□□□□□ -0.86
VPS50-218ENST00000485994 FAM208AQ9UK61 1670 aaKnown RBP9.66□□□□□ -0.86
VPS50-218ENST00000485994 MAP2P11137 1827 aaKnown RBP9.66□□□□□ -0.86
VPS50-218ENST00000485994 NSD3Q9BZ95 1437 aa9.65□□□□□ -0.86
VPS50-218ENST00000485994 WASHC2AQ641Q2 1341 aa9.65□□□□□ -0.86
VPS50-218ENST00000485994 LRRC37A3O60309 1634 aa9.65□□□□□ -0.86
VPS50-218ENST00000485994 C7P10643 843 aa9.65□□□□□ -0.86
VPS50-218ENST00000485994 RRS1Q15050 365 aaKnown RBP9.65□□□□□ -0.86
VPS50-218ENST00000485994 PANK3Q9H999 370 aa9.65□□□□□ -0.86
VPS50-218ENST00000485994 KIF20BQ96Q89 1820 aa9.65□□□□□ -0.86
VPS50-218ENST00000485994 SRCAPQ6ZRS2 3230 aa9.65□□□□□ -0.87
VPS50-218ENST00000485994 FLT4P35916 1363 aa9.64□□□□□ -0.87
VPS50-218ENST00000485994 HSP90AB2PQ58FF8 381 aa9.64□□□□□ -0.87
VPS50-218ENST00000485994 NBPF6Q5VWK0 638 aa9.64□□□□□ -0.87
VPS50-218ENST00000485994 NBPF4Q96M43 638 aa9.64□□□□□ -0.87
VPS50-218ENST00000485994 TNS2Q63HR2 1409 aa9.64□□□□□ -0.87
VPS50-218ENST00000485994 NSD2O96028 1365 aa9.63□□□□□ -0.87
VPS50-218ENST00000485994 NBPF14Q5TI25 921 aa9.63□□□□□ -0.87
VPS50-218ENST00000485994 POLKQ9UBT6 870 aa9.63□□□□□ -0.87
VPS50-218ENST00000485994 RGPD3A6NKT7 1758 aaPredicted RBP9.63□□□□□ -0.87
VPS50-218ENST00000485994 RGPD4Q7Z3J3 1758 aa9.63□□□□□ -0.87
VPS50-218ENST00000485994 PER1O15534 1290 aaPredicted RBP9.62□□□□□ -0.87
VPS50-218ENST00000485994 PROM2Q8N271 834 aa9.62□□□□□ -0.87
VPS50-218ENST00000485994 ZCRB1Q8TBF4 217 aaKnown RBP9.62□□□□□ -0.87
VPS50-218ENST00000485994 LTV1Q96GA3 475 aaPredicted RBP9.62□□□□□ -0.87
VPS50-218ENST00000485994 PTF1AQ7RTS3 328 aa9.61□□□□□ -0.87
VPS50-218ENST00000485994 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS50-218ENST00000485994 KNSTRNQ9Y448 316 aa9.61□□□□□ -0.87
VPS50-218ENST00000485994 EMILIN1Q9Y6C2 1016 aa9.61□□□□□ -0.87
VPS50-218ENST00000485994 NCAPD2Q15021 1401 aa9.61□□□□□ -0.87
VPS50-218ENST00000485994 SMG6Q86US8 1419 aaKnown RBP9.61□□□□□ -0.87
VPS50-218ENST00000485994 PLEKHG2Q9H7P9 1386 aa9.61□□□□□ -0.87
VPS50-218ENST00000485994 RGPD2P0DJD1 1756 aa9.6□□□□□ -0.87
VPS50-218ENST00000485994 KIF7Q2M1P5 1343 aa9.6□□□□□ -0.87
VPS50-218ENST00000485994 KCNQ2O43526 872 aa9.6□□□□□ -0.87
VPS50-218ENST00000485994 TATP17735 454 aaPredicted RBP9.6□□□□□ -0.87
VPS50-218ENST00000485994 RAPGEF4Q8WZA2 1011 aa9.6□□□□□ -0.87
VPS50-218ENST00000485994 POLR3GLQ9BT43 218 aa9.6□□□□□ -0.87
VPS50-218ENST00000485994 BMP2KQ9NSY1 1161 aaPredicted RBP9.6□□□□□ -0.87
VPS50-218ENST00000485994 RREB1Q92766 1687 aa9.6□□□□□ -0.87
VPS50-218ENST00000485994 ANKRD26Q9UPS8 1709 aa9.59□□□□□ -0.87
VPS50-218ENST00000485994 AMER1Q5JTC6 1135 aaPredicted RBP9.59□□□□□ -0.87
VPS50-218ENST00000485994 DDX54Q8TDD1 881 aaKnown RBP9.59□□□□□ -0.87
VPS50-218ENST00000485994 HMGB2P26583 209 aaKnown RBP9.58□□□□□ -0.88
VPS50-218ENST00000485994 R3HDM1Q15032 1099 aaKnown RBP9.58□□□□□ -0.88
VPS50-218ENST00000485994 NKX1-1Q15270 411 aaPredicted RBP9.58□□□□□ -0.88
VPS50-218ENST00000485994 TXNRD1Q16881 649 aa9.58□□□□□ -0.88
VPS50-218ENST00000485994 MORC1Q86VD1 984 aa9.58□□□□□ -0.88
VPS50-218ENST00000485994 KIF12Q96FN5 646 aa9.58□□□□□ -0.88
VPS50-218ENST00000485994 EYA1Q99502 592 aa9.58□□□□□ -0.88
VPS50-218ENST00000485994 NPC1L1Q9UHC9 1359 aa9.58□□□□□ -0.88
VPS50-218ENST00000485994 NUP188Q5SRE5 1749 aa9.57□□□□□ -0.88
VPS50-218ENST00000485994 PSDA5PKW4 1024 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms