RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 TATP17735 454 aaPredicted RBP22.74■■□□□ 1.23
TRIM54-203ENST00000485306 TXNRD1Q16881 649 aa22.74■■□□□ 1.23
TRIM54-203ENST00000485306 PROM2Q8N271 834 aa22.74■■□□□ 1.23
TRIM54-203ENST00000485306 USHBP1Q8N6Y0 703 aa22.74■■□□□ 1.23
TRIM54-203ENST00000485306 WASHC2AQ641Q2 1341 aa22.72■■□□□ 1.23
TRIM54-203ENST00000485306 TNNT2P45379 298 aaPredicted RBP22.71■■□□□ 1.23
TRIM54-203ENST00000485306 POLKQ9UBT6 870 aa22.71■■□□□ 1.23
TRIM54-203ENST00000485306 MEGF6O75095 1541 aa22.71■■□□□ 1.23
TRIM54-203ENST00000485306 KNSTRNQ9Y448 316 aa22.7■■□□□ 1.22
TRIM54-203ENST00000485306 ANKRD26Q9UPS8 1709 aa22.7■■□□□ 1.22
TRIM54-203ENST00000485306 NSD2O96028 1365 aa22.69■■□□□ 1.22
TRIM54-203ENST00000485306 SYTL4Q96C24 671 aaPredicted RBP22.69■■□□□ 1.22
TRIM54-203ENST00000485306 STK32BQ9NY57 414 aa22.69■■□□□ 1.22
TRIM54-203ENST00000485306 BTAF1O14981 1849 aa22.68■■□□□ 1.22
TRIM54-203ENST00000485306 PRIM1P49642 420 aaKnown RBP22.67■■□□□ 1.22
TRIM54-203ENST00000485306 MORC1Q86VD1 984 aa22.66■■□□□ 1.22
TRIM54-203ENST00000485306 SPON1Q9HCB6 807 aa22.66■■□□□ 1.22
TRIM54-203ENST00000485306 ANO8Q9HCE9 1232 aaPredicted RBP22.66■■□□□ 1.22
TRIM54-203ENST00000485306 PCDH11XQ9BZA7 1347 aa22.65■■□□□ 1.22
TRIM54-203ENST00000485306 PCDH11YQ9BZA8 1340 aa22.65■■□□□ 1.22
TRIM54-203ENST00000485306 ZNF316A6NFI3 1004 aaPredicted RBP22.65■■□□□ 1.22
TRIM54-203ENST00000485306 SLC15A2Q16348 729 aa22.65■■□□□ 1.22
TRIM54-203ENST00000485306 SHANK3Q9BYB0 1731 aa22.64■■□□□ 1.21
TRIM54-203ENST00000485306 EYA1Q99502 592 aa22.63■■□□□ 1.21
TRIM54-203ENST00000485306 SLC27A3Q5K4L6 730 aa22.62■■□□□ 1.21
TRIM54-203ENST00000485306 SPG7Q9UQ90 795 aa22.62■■□□□ 1.21
TRIM54-203ENST00000485306 DOT1LQ8TEK3 1739 aa22.61■■□□□ 1.21
TRIM54-203ENST00000485306 EIF4A2Q14240 407 aaKnown RBP22.6■■□□□ 1.21
TRIM54-203ENST00000485306 PPP1R1BQ9UD71 204 aaPredicted RBP22.6■■□□□ 1.21
TRIM54-203ENST00000485306 NCAPD2Q15021 1401 aa22.59■■□□□ 1.21
TRIM54-203ENST00000485306 AMER1Q5JTC6 1135 aaPredicted RBP22.58■■□□□ 1.21
TRIM54-203ENST00000485306 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.58■■□□□ 1.21
TRIM54-203ENST00000485306 CYP27B1O15528 508 aa22.57■■□□□ 1.2
TRIM54-203ENST00000485306 LRRC4BQ9NT99 713 aa22.57■■□□□ 1.2
TRIM54-203ENST00000485306 PER1O15534 1290 aaPredicted RBP22.56■■□□□ 1.2
TRIM54-203ENST00000485306 HMGB2P26583 209 aaKnown RBP22.56■■□□□ 1.2
TRIM54-203ENST00000485306 CASZ1Q86V15 1759 aa22.55■■□□□ 1.2
TRIM54-203ENST00000485306 PKD1L3Q7Z443 1732 aa22.54■■□□□ 1.2
TRIM54-203ENST00000485306 ZBTB7AO95365 584 aa22.54■■□□□ 1.2
TRIM54-203ENST00000485306 MPRIPQ6WCQ1 1025 aa22.54■■□□□ 1.2
TRIM54-203ENST00000485306 PDGFDQ9GZP0 370 aaPredicted RBP22.54■■□□□ 1.2
TRIM54-203ENST00000485306 NKX1-1Q15270 411 aaPredicted RBP22.53■■□□□ 1.2
TRIM54-203ENST00000485306 CCNL1Q9UK58 526 aaPredicted RBP22.53■■□□□ 1.2
TRIM54-203ENST00000485306 IFNL2Q8IZJ0 200 aa22.52■■□□□ 1.2
TRIM54-203ENST00000485306 IGSF1Q8N6C5 1336 aa22.52■■□□□ 1.2
TRIM54-203ENST00000485306 LY75O60449 1722 aa22.51■■□□□ 1.19
TRIM54-203ENST00000485306 PAPPAQ13219 1627 aa22.51■■□□□ 1.19
TRIM54-203ENST00000485306 AKT1S1Q96B36 256 aa22.51■■□□□ 1.19
TRIM54-203ENST00000485306 MTFR1LQ9H019 292 aa22.51■■□□□ 1.19
TRIM54-203ENST00000485306 ATF5Q9Y2D1 282 aaPredicted RBP22.51■■□□□ 1.19
TRIM54-203ENST00000485306 PLEKHG2Q9H7P9 1386 aa22.5■■□□□ 1.19
TRIM54-203ENST00000485306 ZNF827Q17R98 1081 aa22.5■■□□□ 1.19
TRIM54-203ENST00000485306 SMARCC1Q92922 1105 aaPredicted RBP22.5■■□□□ 1.19
TRIM54-203ENST00000485306 TFCP2L1Q9NZI6 479 aa22.5■■□□□ 1.19
TRIM54-203ENST00000485306 KCNQ4P56696 695 aa22.49■■□□□ 1.19
TRIM54-203ENST00000485306 PHKG2P15735 406 aa22.48■■□□□ 1.19
TRIM54-203ENST00000485306 PLEKHO1Q53GL0 409 aaPredicted RBP22.48■■□□□ 1.19
TRIM54-203ENST00000485306 CC2D1BQ5T0F9 858 aaKnown RBP22.48■■□□□ 1.19
TRIM54-203ENST00000485306 ITGB4P16144 1822 aa22.47■■□□□ 1.19
TRIM54-203ENST00000485306 AMOTQ4VCS5 1084 aa22.47■■□□□ 1.19
TRIM54-203ENST00000485306 NPC1L1Q9UHC9 1359 aa22.47■■□□□ 1.19
TRIM54-203ENST00000485306 SLC16A10Q8TF71 515 aa22.46■■□□□ 1.19
TRIM54-203ENST00000485306 PIGBQ92521 554 aa22.46■■□□□ 1.19
TRIM54-203ENST00000485306 TMOD3Q9NYL9 352 aa22.46■■□□□ 1.19
TRIM54-203ENST00000485306 DCAF8L1A6NGE4 600 aa22.45■■□□□ 1.18
TRIM54-203ENST00000485306 HSP90AB1P08238 724 aaKnown RBP22.45■■□□□ 1.18
TRIM54-203ENST00000485306 PTGER2P43116 358 aa22.45■■□□□ 1.18
TRIM54-203ENST00000485306 MTHFSP49914 203 aa22.45■■□□□ 1.18
TRIM54-203ENST00000485306 PALLDQ8WX93 1383 aa22.45■■□□□ 1.18
TRIM54-203ENST00000485306 IL13P35225 146 aa22.44■■□□□ 1.18
TRIM54-203ENST00000485306 QSER1Q2KHR3 1735 aa22.43■■□□□ 1.18
TRIM54-203ENST00000485306 TOGARAM1Q9Y4F4 1720 aa22.43■■□□□ 1.18
TRIM54-203ENST00000485306 SULT6B1Q6IMI4 303 aa22.43■■□□□ 1.18
TRIM54-203ENST00000485306 CNGB1Q14028 1251 aaPredicted RBP22.42■■□□□ 1.18
TRIM54-203ENST00000485306 PNPLA7Q6ZV29 1317 aa22.41■■□□□ 1.18
TRIM54-203ENST00000485306 ZNF530Q6P9A1 599 aaPredicted RBP22.41■■□□□ 1.18
TRIM54-203ENST00000485306 DCAF5Q96JK2 942 aa22.41■■□□□ 1.18
TRIM54-203ENST00000485306 ERVV-2B6SEH9 535 aa22.4■■□□□ 1.18
TRIM54-203ENST00000485306 C1orf141Q5JVX7 400 aa22.4■■□□□ 1.18
TRIM54-203ENST00000485306 AEBP1Q8IUX7 1158 aa22.4■■□□□ 1.18
TRIM54-203ENST00000485306 MSH5O43196 834 aa22.39■■□□□ 1.17
TRIM54-203ENST00000485306 ARXQ96QS3 562 aa22.39■■□□□ 1.17
TRIM54-203ENST00000485306 SGIP1Q9BQI5 828 aa22.39■■□□□ 1.17
TRIM54-203ENST00000485306 DIAPH1O60610 1272 aaKnown RBP22.38■■□□□ 1.17
TRIM54-203ENST00000485306 POLD1P28340 1107 aa22.38■■□□□ 1.17
TRIM54-203ENST00000485306 FLAD1Q8NFF5 587 aa22.38■■□□□ 1.17
TRIM54-203ENST00000485306 C5P01031 1676 aa22.38■■□□□ 1.17
TRIM54-203ENST00000485306 KDRP35968 1356 aa22.38■■□□□ 1.17
TRIM54-203ENST00000485306 TUBGCP6Q96RT7 1819 aa22.36■■□□□ 1.17
TRIM54-203ENST00000485306 LOC102724428A0A0B4J2F2 783 aa22.36■■□□□ 1.17
TRIM54-203ENST00000485306 SIK1P57059 783 aa22.36■■□□□ 1.17
TRIM54-203ENST00000485306 DDX10Q13206 875 aaKnown RBP22.36■■□□□ 1.17
TRIM54-203ENST00000485306 ASAP1Q9ULH1 1129 aa22.36■■□□□ 1.17
TRIM54-203ENST00000485306 TAF1LQ8IZX4 1826 aa22.36■■□□□ 1.17
TRIM54-203ENST00000485306 CABP4P57796 275 aa22.35■■□□□ 1.17
TRIM54-203ENST00000485306 AK7Q96M32 723 aa22.35■■□□□ 1.17
TRIM54-203ENST00000485306 COL23A1Q86Y22 540 aaPredicted RBP22.34■■□□□ 1.17
TRIM54-203ENST00000485306 SYT17Q9BSW7 474 aa22.34■■□□□ 1.17
TRIM54-203ENST00000485306 FHDC1Q9C0D6 1143 aaPredicted RBP22.34■■□□□ 1.17
TRIM54-203ENST00000485306 ATP6V1AP38606 617 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms