RNA–Protein interactions for RNA: ENST00000485036.5

TNFRSF25-215, Transcript of TNF receptor superfamily member 25, human

TSL 1 (best)

Gene TNFRSF25, Length 1,726 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF25-215	ENST00000485036	LAS1L	Q9Y4W2	734 aa	Known RBP	32.68	■■■□□ 2.82
TNFRSF25-215	ENST00000485036	C20orf194	Q5TEA3	1177 aa		32.66	■■■□□ 2.82
TNFRSF25-215	ENST00000485036	RTF1	Q92541	710 aa	Known RBP	32.66	■■■□□ 2.82
TNFRSF25-215	ENST00000485036	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.66	■■■□□ 2.82
TNFRSF25-215	ENST00000485036	GNAT3	A8MTJ3	354 aa		32.65	■■■□□ 2.82
TNFRSF25-215	ENST00000485036	ZNF428	Q96B54	188 aa		32.64	■■■□□ 2.82
TNFRSF25-215	ENST00000485036	PLEKHG2	Q9H7P9	1386 aa		32.63	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	CHL1	O00533	1208 aa		32.63	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	CHRNA2	Q15822	529 aa		32.63	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	CRBN	Q96SW2	442 aa		32.63	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	PDE3A	Q14432	1141 aa		32.6	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	AMOT	Q4VCS5	1084 aa		32.6	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	VIRMA	Q69YN4	1812 aa	Known RBP	32.59	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	ALDH1L2	Q3SY69	923 aa		32.59	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	B4GALNT3	Q6L9W6	998 aa		32.59	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	PRDM11	Q9NQV5	511 aa		32.58	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.57	■■■□□ 2.81
TNFRSF25-215	ENST00000485036	COL16A1	Q07092	1604 aa	Predicted RBP	32.57	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	CEMIP	Q8WUJ3	1361 aa		32.57	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	SSH1	Q8WYL5	1049 aa		32.57	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	BCL2L13	Q9BXK5	485 aa		32.57	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	PHLPP1	O60346	1717 aa		32.57	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	COL5A2	P05997	1499 aa	Predicted RBP	32.56	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	VAMP4	O75379	141 aa		32.55	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	ADAMTS7	Q9UKP4	1686 aa		32.55	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	HAP1	P54257	671 aa	Predicted RBP	32.54	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	IL17RE	Q8NFR9	667 aa		32.54	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	SMC4	Q9NTJ3	1288 aa		32.54	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	NLRP2	Q9NX02	1062 aa		32.54	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	CANX	P27824	592 aa	Known RBP	32.54	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	BRPF1	P55201	1214 aa	Predicted RBP	32.54	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	TSPYL6	Q8N831	410 aa		32.54	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	PKD1L3	Q7Z443	1732 aa		32.53	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	OVOS2	A0A0G2JMS6	1433 aa		32.53	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	AKAP4	Q5JQC9	854 aa		32.53	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	FRAT1	Q92837	279 aa	Predicted RBP	32.52	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	CCDC136	Q96JN2	1154 aa		32.52	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	MEGF6	O75095	1541 aa		32.52	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	CSB-PGBD3	P0DP91	1061 aa		32.51	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	TWISTNB	Q3B726	338 aa	Predicted RBP	32.51	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	C8orf58	Q8NAV2	365 aa		32.51	■■■□□ 2.8
TNFRSF25-215	ENST00000485036	WDR17	Q8IZU2	1322 aa		32.51	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.51	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	PELP1	Q8IZL8	1130 aa	Known RBP	32.51	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	BABAM1	Q9NWV8	329 aa		32.51	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	KIF16B	Q96L93	1317 aa		32.5	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	COL14A1	Q05707	1796 aa	Known RBP	32.49	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	PARP4	Q9UKK3	1724 aa	Known RBP	32.48	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	TOM1	O60784	492 aa		32.48	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	ZKSCAN2	Q63HK3	967 aa		32.48	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	RAPGEF4	Q8WZA2	1011 aa		32.48	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	KDM3B	Q7LBC6	1761 aa		32.47	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	CERK	Q8TCT0	537 aa		32.47	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	TSPYL4	Q9UJ04	414 aa		32.47	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.46	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	SIPA1L3	O60292	1781 aa	Predicted RBP	32.46	■■■□□ 2.79
TNFRSF25-215	ENST00000485036	TAT	P17735	454 aa	Predicted RBP	32.45	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	TAF7	Q15545	349 aa	Predicted RBP	32.44	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	C1orf141	Q5JVX7	400 aa		32.44	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	PANK1	Q8TE04	598 aa		32.44	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	MS4A1	P11836	297 aa		32.43	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	ELL2	O00472	640 aa	Predicted RBP	32.43	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	MRPL50	Q8N5N7	158 aa	Known RBP	32.43	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	SCN11A	Q9UI33	1791 aa		32.42	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	MIS18A	Q9NYP9	233 aa		32.42	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	RLBP1	P12271	317 aa		32.41	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	ATF7IP	Q6VMQ6	1270 aa		32.41	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	TNN	Q9UQP3	1299 aa		32.41	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	TRIM27	P14373	513 aa		32.4	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	KRT24	Q2M2I5	525 aa		32.4	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	LGR6	Q9HBX8	967 aa		32.4	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	NOB1	Q9ULX3	412 aa	Known RBP	32.4	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	IPO8	O15397	1037 aa	Known RBP	32.39	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	SPG7	Q9UQ90	795 aa		32.39	■■■□□ 2.78
TNFRSF25-215	ENST00000485036	RNMT	O43148	476 aa	Known RBP	32.38	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	DZIP1L	Q8IYY4	767 aa	Known RBP	32.38	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	COG6	Q9Y2V7	657 aa		32.38	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	UBAP1L	F5GYI3	381 aa		32.37	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	CARD10	Q9BWT7	1032 aa		32.37	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	SOS1	Q07889	1333 aa	Predicted RBP	32.37	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	TOM1L2	Q6ZVM7	507 aa		32.37	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	ARHGAP45	Q92619	1136 aa		32.37	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	MPRIP	Q6WCQ1	1025 aa		32.36	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	AAMP	Q13685	434 aa		32.35	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	FTSJ3	Q8IY81	847 aa	Known RBP	32.34	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	CLUAP1	Q96AJ1	413 aa		32.34	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	KDM6A	O15550	1401 aa	Predicted RBP	32.33	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	PHKG2	P15735	406 aa		32.33	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	MVP	Q14764	893 aa	Known RBP	32.33	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	SHANK3	Q9BYB0	1731 aa		32.33	■■■□□ 2.77
TNFRSF25-215	ENST00000485036	PLCH1	Q4KWH8	1693 aa		32.32	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	TEF	Q10587	303 aa		32.32	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	MRC1	P22897	1456 aa		32.32	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	PIP4K2B	P78356	416 aa		32.31	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	LARP1	Q6PKG0	1096 aa	Known RBP	32.31	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	IFNL2	Q8IZJ0	200 aa		32.31	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	CACNA1F	O60840	1977 aa		32.29	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	STRN4	Q9NRL3	753 aa		32.29	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	EVA1C	P58658	441 aa		32.29	■■■□□ 2.76
TNFRSF25-215	ENST00000485036	BTG4	Q9NY30	223 aa		32.29	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms