RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 ADAMTS8Q9UP79 889 aa7.58□□□□□ -1.2
PTCD3-214ENST00000483925 SENP3-EIF4A1A0A087X0R7 540 aa7.57□□□□□ -1.2
PTCD3-214ENST00000483925 KDF1Q8NAX2 398 aaPredicted RBP7.57□□□□□ -1.2
PTCD3-214ENST00000483925 TRIM34Q9BYJ4 488 aa7.57□□□□□ -1.2
PTCD3-214ENST00000483925 SLURP2P0DP57 97 aa7.56□□□□□ -1.2
PTCD3-214ENST00000483925 GSK3AP49840 483 aa7.56□□□□□ -1.2
PTCD3-214ENST00000483925 FOXD4L5Q5VV16 416 aaPredicted RBP7.56□□□□□ -1.2
PTCD3-214ENST00000483925 LYSMD3Q7Z3D4 306 aa7.56□□□□□ -1.2
PTCD3-214ENST00000483925 SVOPQ8N4V2 548 aa7.56□□□□□ -1.2
PTCD3-214ENST00000483925 ZBBXA8MT70 800 aa7.55□□□□□ -1.2
PTCD3-214ENST00000483925 RNF225M0QZC1 329 aaPredicted RBP7.55□□□□□ -1.2
PTCD3-214ENST00000483925 ZNF385CQ66K41 422 aaPredicted RBP7.55□□□□□ -1.2
PTCD3-214ENST00000483925 TMEM151AQ8N4L1 468 aa7.55□□□□□ -1.2
PTCD3-214ENST00000483925 CYLDQ9NQC7 956 aa7.55□□□□□ -1.2
PTCD3-214ENST00000483925 RNF144AP50876 292 aaPredicted RBP7.54□□□□□ -1.2
PTCD3-214ENST00000483925 RASSF7Q02833 373 aa7.54□□□□□ -1.2
PTCD3-214ENST00000483925 CCDC125Q86Z20 511 aa7.54□□□□□ -1.2
PTCD3-214ENST00000483925 PCDHB9Q9Y5E1 797 aa7.54□□□□□ -1.2
PTCD3-214ENST00000483925 APBB1O00213 710 aa7.53□□□□□ -1.2
PTCD3-214ENST00000483925 GIGYF1O75420 1035 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-214ENST00000483925 PRICKLE2Q7Z3G6 844 aa7.53□□□□□ -1.2
PTCD3-214ENST00000483925 KCTD17Q8N5Z5 321 aa7.53□□□□□ -1.2
PTCD3-214ENST00000483925 WHAMMQ8TF30 809 aa7.53□□□□□ -1.2
PTCD3-214ENST00000483925 ATP5J2-PTCD1G3V325 749 aa7.52□□□□□ -1.21
PTCD3-214ENST00000483925 GDF11O95390 407 aa7.52□□□□□ -1.21
PTCD3-214ENST00000483925 FLIIQ13045 1269 aa7.52□□□□□ -1.21
PTCD3-214ENST00000483925 C1orf115Q9H7X2 142 aa7.52□□□□□ -1.21
PTCD3-214ENST00000483925 ARHGEF15O94989 841 aa7.51□□□□□ -1.21
PTCD3-214ENST00000483925 FBXO45P0C2W1 286 aa7.51□□□□□ -1.21
PTCD3-214ENST00000483925 RNF20Q5VTR2 975 aa7.51□□□□□ -1.21
PTCD3-214ENST00000483925 GJD4Q96KN9 370 aaPredicted RBP7.51□□□□□ -1.21
PTCD3-214ENST00000483925 ADAMTS2O95450 1211 aa7.5□□□□□ -1.21
PTCD3-214ENST00000483925 RHOQP17081 205 aa7.5□□□□□ -1.21
PTCD3-214ENST00000483925 GPC1P35052 558 aa7.5□□□□□ -1.21
PTCD3-214ENST00000483925 MCCD1P59942 119 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-214ENST00000483925 SRSF11Q05519 484 aaKnown RBP7.5□□□□□ -1.21
PTCD3-214ENST00000483925 GMCL1Q96IK5 515 aa7.5□□□□□ -1.21
PTCD3-214ENST00000483925 CUEDC1Q9NWM3 386 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-214ENST00000483925 A0A1W2PRU2 124 aa7.49□□□□□ -1.21
PTCD3-214ENST00000483925 MEN1O00255 615 aa7.49□□□□□ -1.21
PTCD3-214ENST00000483925 MARSP56192 900 aaKnown RBP7.49□□□□□ -1.21
PTCD3-214ENST00000483925 ERVK-9P63128 1117 aa7.48□□□□□ -1.21
PTCD3-214ENST00000483925 CC2D2BQ6DHV5 1058 aa7.48□□□□□ -1.21
PTCD3-214ENST00000483925 FOXR1Q6PIV2 292 aa7.48□□□□□ -1.21
PTCD3-214ENST00000483925 ZNF592Q92610 1267 aa7.48□□□□□ -1.21
PTCD3-214ENST00000483925 ARID3CA6NKF2 412 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 MAP3K10Q02779 954 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 NR1H3Q13133 447 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 GAS6Q14393 721 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 SLC27A3Q5K4L6 730 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 LYPD4Q6UWN0 246 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 TRIM22Q8IYM9 498 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 NLRP3Q96P20 1036 aa7.47□□□□□ -1.21
PTCD3-214ENST00000483925 ZNF330Q9Y3S2 320 aaPredicted RBP7.47□□□□□ -1.21
PTCD3-214ENST00000483925 IRS1P35568 1242 aa7.46□□□□□ -1.22
PTCD3-214ENST00000483925 RIPOR1Q6ZS17 1223 aa7.46□□□□□ -1.22
PTCD3-214ENST00000483925 CYP2U1Q7Z449 544 aa7.46□□□□□ -1.22
PTCD3-214ENST00000483925 BANK1Q8NDB2 785 aa7.46□□□□□ -1.22
PTCD3-214ENST00000483925 ZNF837Q96EG3 531 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-214ENST00000483925 SCARF2Q96GP6 870 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-214ENST00000483925 DYRK1BQ9Y463 629 aa7.46□□□□□ -1.22
PTCD3-214ENST00000483925 H7C1W4 665 aa7.45□□□□□ -1.22
PTCD3-214ENST00000483925 CELA2BP08218 269 aaPredicted RBP7.45□□□□□ -1.22
PTCD3-214ENST00000483925 POU4F2Q12837 409 aa7.45□□□□□ -1.22
PTCD3-214ENST00000483925 SUZ12Q15022 739 aaKnown RBP7.45□□□□□ -1.22
PTCD3-214ENST00000483925 DBN1Q16643 649 aa7.45□□□□□ -1.22
PTCD3-214ENST00000483925 KANK3Q6NY19 840 aa7.45□□□□□ -1.22
PTCD3-214ENST00000483925 ESF1Q9H501 851 aaKnown RBP7.45□□□□□ -1.22
PTCD3-214ENST00000483925 ENAMQ9NRM1 1142 aa7.45□□□□□ -1.22
PTCD3-214ENST00000483925 MBIPQ9NS73 344 aa7.45□□□□□ -1.22
PTCD3-214ENST00000483925 CLN3Q13286 438 aa7.44□□□□□ -1.22
PTCD3-214ENST00000483925 GAS2L1Q99501 681 aaPredicted RBP7.44□□□□□ -1.22
PTCD3-214ENST00000483925 GRIP2Q9C0E4 1043 aa7.44□□□□□ -1.22
PTCD3-214ENST00000483925 PCDHB11Q9Y5F2 797 aa7.44□□□□□ -1.22
PTCD3-214ENST00000483925 LOC100996750A0A140TA64 210 aa7.43□□□□□ -1.22
PTCD3-214ENST00000483925 GPR25O00155 361 aa7.43□□□□□ -1.22
PTCD3-214ENST00000483925 SOCS7O14512 581 aa7.43□□□□□ -1.22
PTCD3-214ENST00000483925 SCTRP47872 440 aa7.43□□□□□ -1.22
PTCD3-214ENST00000483925 WDR44Q5JSH3 913 aa7.43□□□□□ -1.22
PTCD3-214ENST00000483925 KRTAP4-6Q9BYQ5 205 aa7.43□□□□□ -1.22
PTCD3-214ENST00000483925 DNMT3AQ9Y6K1 912 aaPredicted RBP7.43□□□□□ -1.22
PTCD3-214ENST00000483925 A6NJR5 290 aa7.42□□□□□ -1.22
PTCD3-214ENST00000483925 SPATA31C2B4DYI2 1134 aa7.42□□□□□ -1.22
PTCD3-214ENST00000483925 TRAK2O60296 914 aa7.42□□□□□ -1.22
PTCD3-214ENST00000483925 NBPF10Q6P3W6 841 aaKnown RBP7.42□□□□□ -1.22
PTCD3-214ENST00000483925 NBPF15Q8N660 670 aa7.42□□□□□ -1.22
PTCD3-214ENST00000483925 TRERF1Q96PN7 1200 aa7.42□□□□□ -1.22
PTCD3-214ENST00000483925 OSBPL3Q9H4L5 887 aa7.42□□□□□ -1.22
PTCD3-214ENST00000483925 NDUFB9Q9Y6M9 179 aa7.42□□□□□ -1.22
PTCD3-214ENST00000483925 GTPBP3Q969Y2 492 aaKnown RBP7.41□□□□□ -1.22
PTCD3-214ENST00000483925 ARHGEF10LQ9HCE6 1279 aa7.41□□□□□ -1.22
PTCD3-214ENST00000483925 TIMMDC1Q9NPL8 285 aa7.41□□□□□ -1.22
PTCD3-214ENST00000483925 IGF1RP08069 1367 aa7.41□□□□□ -1.22
PTCD3-214ENST00000483925 IGHA1P01876 353 aa7.4□□□□□ -1.22
PTCD3-214ENST00000483925 FOXK2Q01167 660 aa7.4□□□□□ -1.22
PTCD3-214ENST00000483925 TAS1R3Q7RTX0 852 aa7.4□□□□□ -1.22
PTCD3-214ENST00000483925 CCDC82Q8N4S0 544 aa7.4□□□□□ -1.22
PTCD3-214ENST00000483925 MTMR14Q8NCE2 650 aa7.4□□□□□ -1.22
PTCD3-214ENST00000483925 GPR37L1O60883 481 aa7.39□□□□□ -1.23
PTCD3-214ENST00000483925 GNRH1P01148 92 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms