RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-213ENST00000483922 YBX3P16989 372 aaKnown RBP eCLIP18.34■□□□□ 0.539e-9■□□□□ 9.2
UBR4-213ENST00000483922 HOXC9P31274 260 aa18.34■□□□□ 0.53
UBR4-213ENST00000483922 SYTL4Q96C24 671 aaPredicted RBP18.34■□□□□ 0.53
UBR4-213ENST00000483922 TFCP2L1Q9NZI6 479 aa18.34■□□□□ 0.53
UBR4-213ENST00000483922 SHANK3Q9BYB0 1731 aa18.34■□□□□ 0.53
UBR4-213ENST00000483922 LY75O60449 1722 aa18.33■□□□□ 0.52
UBR4-213ENST00000483922 COL23A1Q86Y22 540 aaPredicted RBP18.33■□□□□ 0.52
UBR4-213ENST00000483922 TESK2Q96S53 571 aa18.33■□□□□ 0.52
UBR4-213ENST00000483922 TERF2IPQ9NYB0 399 aa18.33■□□□□ 0.52
UBR4-213ENST00000483922 RGPD2P0DJD1 1756 aa18.32■□□□□ 0.52
UBR4-213ENST00000483922 ZCRB1Q8TBF4 217 aaKnown RBP18.32■□□□□ 0.52
UBR4-213ENST00000483922 PUS7Q96PZ0 661 aaKnown RBP18.32■□□□□ 0.52
UBR4-213ENST00000483922 MEGF6O75095 1541 aa18.32■□□□□ 0.52
UBR4-213ENST00000483922 POLD1P28340 1107 aa18.31■□□□□ 0.52
UBR4-213ENST00000483922 NBPF6Q5VWK0 638 aa18.31■□□□□ 0.52
UBR4-213ENST00000483922 PELP1Q8IZL8 1130 aaKnown RBP18.31■□□□□ 0.52
UBR4-213ENST00000483922 NBPF4Q96M43 638 aa18.31■□□□□ 0.52
UBR4-213ENST00000483922 DOT1LQ8TEK3 1739 aa18.31■□□□□ 0.52
UBR4-213ENST00000483922 USHBP1Q8N6Y0 703 aa18.28■□□□□ 0.52
UBR4-213ENST00000483922 CCNL1Q9UK58 526 aaPredicted RBP18.28■□□□□ 0.52
UBR4-213ENST00000483922 RRS1Q15050 365 aaKnown RBP18.27■□□□□ 0.52
UBR4-213ENST00000483922 MSL1Q68DK7 614 aa18.27■□□□□ 0.52
UBR4-213ENST00000483922 AMIGO3Q86WK7 504 aa18.27■□□□□ 0.52
UBR4-213ENST00000483922 COG3Q96JB2 828 aa18.27■□□□□ 0.52
UBR4-213ENST00000483922 ST20-MTHFSA0A0A6YYL1 179 aa18.26■□□□□ 0.51
UBR4-213ENST00000483922 GIGYF1O75420 1035 aaPredicted RBP18.26■□□□□ 0.51
UBR4-213ENST00000483922 AMPHP49418 695 aa18.26■□□□□ 0.51
UBR4-213ENST00000483922 FYB1O15117 783 aa18.25■□□□□ 0.51
UBR4-213ENST00000483922 SMIM5Q71RC9 77 aa18.24■□□□□ 0.51
UBR4-213ENST00000483922 MSH5O43196 834 aa18.23■□□□□ 0.51
UBR4-213ENST00000483922 USP47Q96K76 1375 aa18.22■□□□□ 0.51
UBR4-213ENST00000483922 GGNBP2Q9H3C7 697 aa18.22■□□□□ 0.51
UBR4-213ENST00000483922 GRIN3BO60391 1043 aa18.21■□□□□ 0.51
UBR4-213ENST00000483922 HSP90AB2PQ58FF8 381 aa18.21■□□□□ 0.51
UBR4-213ENST00000483922 CYP27B1O15528 508 aa18.19■□□□□ 0.5
UBR4-213ENST00000483922 RTL1A6NKG5 1358 aa18.18■□□□□ 0.5
UBR4-213ENST00000483922 ATP10DQ9P241 1426 aa18.18■□□□□ 0.5
UBR4-213ENST00000483922 IFFO2Q5TF58 517 aa18.18■□□□□ 0.5
UBR4-213ENST00000483922 C5P01031 1676 aa18.18■□□□□ 0.5
UBR4-213ENST00000483922 MPRIPQ6WCQ1 1025 aa18.17■□□□□ 0.5
UBR4-213ENST00000483922 CD2APQ9Y5K6 639 aa18.17■□□□□ 0.5
UBR4-213ENST00000483922 CGNL1Q0VF96 1302 aa18.17■□□□□ 0.5
UBR4-213ENST00000483922 PALLDQ8WX93 1383 aa18.17■□□□□ 0.5
UBR4-213ENST00000483922 TATP17735 454 aaPredicted RBP18.16■□□□□ 0.5
UBR4-213ENST00000483922 RAPGEF4Q8WZA2 1011 aa18.16■□□□□ 0.5
UBR4-213ENST00000483922 TAF1LQ8IZX4 1826 aa18.16■□□□□ 0.5
UBR4-213ENST00000483922 INSRP06213 1382 aa18.16■□□□□ 0.5
UBR4-213ENST00000483922 TOGARAM1Q9Y4F4 1720 aa18.15■□□□□ 0.5
UBR4-213ENST00000483922 ADCY9O60503 1353 aa18.15■□□□□ 0.5
UBR4-213ENST00000483922 TONSLQ96HA7 1378 aa18.15■□□□□ 0.5
UBR4-213ENST00000483922 PIGBQ92521 554 aa18.14■□□□□ 0.49
UBR4-213ENST00000483922 CARD14Q9BXL6 1004 aa18.14■□□□□ 0.49
UBR4-213ENST00000483922 WWC3Q9ULE0 1092 aa18.13■□□□□ 0.49
UBR4-213ENST00000483922 C4BP0C0L5 1744 aa18.12■□□□□ 0.49
UBR4-213ENST00000483922 EMILIN1Q9Y6C2 1016 aa18.12■□□□□ 0.49
UBR4-213ENST00000483922 PCDH11XQ9BZA7 1347 aa18.12■□□□□ 0.49
UBR4-213ENST00000483922 PCDH11YQ9BZA8 1340 aa18.12■□□□□ 0.49
UBR4-213ENST00000483922 NKX1-1Q15270 411 aaPredicted RBP18.11■□□□□ 0.49
UBR4-213ENST00000483922 LINC00116Q8NCU8 138 aa18.11■□□□□ 0.49
UBR4-213ENST00000483922 FLAD1Q8NFF5 587 aa18.11■□□□□ 0.49
UBR4-213ENST00000483922 ITGB4P16144 1822 aa18.11■□□□□ 0.49
UBR4-213ENST00000483922 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.1■□□□□ 0.49
UBR4-213ENST00000483922 ZNF526Q8TF50 670 aaPredicted RBP18.1■□□□□ 0.49
UBR4-213ENST00000483922 MAP2P11137 1827 aaKnown RBP18.09■□□□□ 0.49
UBR4-213ENST00000483922 IGSF1Q8N6C5 1336 aa18.09■□□□□ 0.49
UBR4-213ENST00000483922 PHF14O94880 888 aa18.09■□□□□ 0.49
UBR4-213ENST00000483922 ITPK1Q13572 414 aa18.09■□□□□ 0.49
UBR4-213ENST00000483922 GPBP1L1Q9HC44 474 aaPredicted RBP18.09■□□□□ 0.49
UBR4-213ENST00000483922 NCAPD2Q15021 1401 aa18.08■□□□□ 0.49
UBR4-213ENST00000483922 FLT4P35916 1363 aa18.08■□□□□ 0.49
UBR4-213ENST00000483922 UBR3Q6ZT12 1888 aa18.08■□□□□ 0.49
UBR4-213ENST00000483922 SMG6Q86US8 1419 aaKnown RBP18.07■□□□□ 0.48
UBR4-213ENST00000483922 AK7Q96M32 723 aa18.07■□□□□ 0.48
UBR4-213ENST00000483922 ASAP1Q9ULH1 1129 aa18.07■□□□□ 0.48
UBR4-213ENST00000483922 PKD1L3Q7Z443 1732 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 KIF24Q5T7B8 1368 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 LOC102724428A0A0B4J2F2 783 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 KIF3CO14782 793 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 SLC24A1O60721 1099 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 HSPA6P17066 643 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 SIK1P57059 783 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 TMF1P82094 1093 aa18.06■□□□□ 0.48
UBR4-213ENST00000483922 SMARCC1Q92922 1105 aaPredicted RBP18.06■□□□□ 0.48
UBR4-213ENST00000483922 EYA1Q99502 592 aa18.05■□□□□ 0.48
UBR4-213ENST00000483922 SLC4A9Q96Q91 983 aa18.04■□□□□ 0.48
UBR4-213ENST00000483922 KIF20BQ96Q89 1820 aa18.03■□□□□ 0.48
UBR4-213ENST00000483922 SSFA2P28290 1259 aa18.03■□□□□ 0.48
UBR4-213ENST00000483922 ATG3Q9NT62 314 aa18.03■□□□□ 0.48
UBR4-213ENST00000483922 WASHC2AQ641Q2 1341 aa18.02■□□□□ 0.48
UBR4-213ENST00000483922 PPM1GO15355 546 aaPredicted RBP18.01■□□□□ 0.47
UBR4-213ENST00000483922 PHKG2P15735 406 aa18.01■□□□□ 0.47
UBR4-213ENST00000483922 KIAA1551Q9HCM1 1747 aa18.01■□□□□ 0.47
UBR4-213ENST00000483922 GNPATO15228 680 aa18■□□□□ 0.47
UBR4-213ENST00000483922 ATP6V1AP38606 617 aa18■□□□□ 0.47
UBR4-213ENST00000483922 POLKQ9UBT6 870 aa18■□□□□ 0.47
UBR4-213ENST00000483922 SPG7Q9UQ90 795 aa18■□□□□ 0.47
UBR4-213ENST00000483922 NSD3Q9BZ95 1437 aa17.99■□□□□ 0.47
UBR4-213ENST00000483922 MMP10P09238 476 aa17.99■□□□□ 0.47
UBR4-213ENST00000483922 HMGB2P26583 209 aaKnown RBP17.99■□□□□ 0.47
UBR4-213ENST00000483922 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.99■□□□□ 0.479e-11■■■□□ 16.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms