RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 NCOA4Q13772 614 aa12□□□□□ -0.49
USP40-213ENST00000483216 EML3Q32P44 896 aa12□□□□□ -0.49
USP40-213ENST00000483216 TRIM46Q7Z4K8 759 aa12□□□□□ -0.49
USP40-213ENST00000483216 MAFBQ9Y5Q3 323 aaPredicted RBP12□□□□□ -0.49
USP40-213ENST00000483216 USP17L3A6NCW0 530 aa11.99□□□□□ -0.49
USP40-213ENST00000483216 USP17L4A6NCW7 530 aa11.99□□□□□ -0.49
USP40-213ENST00000483216 UPP2O95045 317 aa11.99□□□□□ -0.49
USP40-213ENST00000483216 USP17L2Q6R6M4 530 aa11.99□□□□□ -0.49
USP40-213ENST00000483216 USP17L1Q7RTZ2 530 aa11.99□□□□□ -0.49
USP40-213ENST00000483216 CYP2U1Q7Z449 544 aa11.99□□□□□ -0.49
USP40-213ENST00000483216 LINC00528Q8N1L1 170 aa11.99□□□□□ -0.49
USP40-213ENST00000483216 BMP1P13497 986 aa11.98□□□□□ -0.49
USP40-213ENST00000483216 KDF1Q8NAX2 398 aaPredicted RBP11.98□□□□□ -0.49
USP40-213ENST00000483216 C1orf115Q9H7X2 142 aa11.98□□□□□ -0.49
USP40-213ENST00000483216 SERPINA10Q9UK55 444 aa11.98□□□□□ -0.49
USP40-213ENST00000483216 ATP5J2-PTCD1G3V325 749 aa11.97□□□□□ -0.49
USP40-213ENST00000483216 SCARF1Q14162 830 aa11.97□□□□□ -0.49
USP40-213ENST00000483216 DEPDC4Q8N2C3 294 aa11.97□□□□□ -0.49
USP40-213ENST00000483216 AGBL1Q96MI9 1066 aa11.97□□□□□ -0.49
USP40-213ENST00000483216 NOD1Q9Y239 953 aa11.97□□□□□ -0.49
USP40-213ENST00000483216 PTGIRP43119 386 aa11.96□□□□□ -0.49
USP40-213ENST00000483216 CCDC97Q96F63 343 aaPredicted RBP11.96□□□□□ -0.49
USP40-213ENST00000483216 CFAP70Q5T0N1 1121 aa11.95□□□□□ -0.5
USP40-213ENST00000483216 SPINT1O43278 529 aa11.94□□□□□ -0.5
USP40-213ENST00000483216 GNRH1P01148 92 aa11.94□□□□□ -0.5
USP40-213ENST00000483216 RELBQ01201 579 aa11.94□□□□□ -0.5
USP40-213ENST00000483216 ZFP42Q96MM3 310 aa11.94□□□□□ -0.5
USP40-213ENST00000483216 PURBQ96QR8 312 aaKnown RBP11.94□□□□□ -0.5
USP40-213ENST00000483216 SUPT5HO00267 1087 aaKnown RBP11.93□□□□□ -0.5
USP40-213ENST00000483216 BMP2P12643 396 aa11.93□□□□□ -0.5
USP40-213ENST00000483216 LMOD1P29536 600 aaPredicted RBP11.93□□□□□ -0.5
USP40-213ENST00000483216 TRIM50Q86XT4 487 aa11.93□□□□□ -0.5
USP40-213ENST00000483216 SENP2Q9HC62 589 aa11.93□□□□□ -0.5
USP40-213ENST00000483216 C6orf118Q5T5N4 469 aa11.92□□□□□ -0.5
USP40-213ENST00000483216 GMPR2Q9P2T1 348 aaKnown RBP11.92□□□□□ -0.5
USP40-213ENST00000483216 MKRN1Q9UHC7 482 aaKnown RBP11.92□□□□□ -0.5
USP40-213ENST00000483216 PCDHGA11Q9Y5H2 935 aa11.92□□□□□ -0.5
USP40-213ENST00000483216 CCDC82Q8N4S0 544 aa11.91□□□□□ -0.5
USP40-213ENST00000483216 KIFC2Q96AC6 838 aa11.91□□□□□ -0.5
USP40-213ENST00000483216 ZNF395Q9H8N7 513 aaPredicted RBP11.91□□□□□ -0.5
USP40-213ENST00000483216 A0A1W2PRU2 124 aa11.9□□□□□ -0.5
USP40-213ENST00000483216 GTF2IP78347 998 aa11.9□□□□□ -0.5
USP40-213ENST00000483216 KANK4Q5T7N3 995 aaPredicted RBP11.9□□□□□ -0.5
USP40-213ENST00000483216 ATP1A2P50993 1020 aa11.89□□□□□ -0.51
USP40-213ENST00000483216 TRIM47Q96LD4 638 aa11.89□□□□□ -0.51
USP40-213ENST00000483216 CLN3Q13286 438 aa11.88□□□□□ -0.51
USP40-213ENST00000483216 INSM2Q96T92 566 aaPredicted RBP11.88□□□□□ -0.51
USP40-213ENST00000483216 ARHGEF10LQ9HCE6 1279 aa11.88□□□□□ -0.51
USP40-213ENST00000483216 SOS2Q07890 1332 aaPredicted RBP11.87□□□□□ -0.51
USP40-213ENST00000483216 ESCO1Q5FWF5 840 aa11.87□□□□□ -0.51
USP40-213ENST00000483216 VRTNQ9H8Y1 702 aa11.87□□□□□ -0.51
USP40-213ENST00000483216 WASLO00401 505 aaPredicted RBP11.86□□□□□ -0.51
USP40-213ENST00000483216 ZBTB7BO15156 539 aaPredicted RBP11.86□□□□□ -0.51
USP40-213ENST00000483216 RFX1P22670 979 aa11.86□□□□□ -0.51
USP40-213ENST00000483216 SCNN1DP51172 638 aa11.86□□□□□ -0.51
USP40-213ENST00000483216 OGFOD1Q8N543 542 aa11.86□□□□□ -0.51
USP40-213ENST00000483216 XAGE2Q96GT9 111 aa11.86□□□□□ -0.51
USP40-213ENST00000483216 ESYT1Q9BSJ8 1104 aa11.86□□□□□ -0.51
USP40-213ENST00000483216 ETNK1Q9HBU6 452 aa11.86□□□□□ -0.51
USP40-213ENST00000483216 TTLL8A6PVC2 850 aa11.85□□□□□ -0.51
USP40-213ENST00000483216 POTECB2RU33 542 aa11.85□□□□□ -0.51
USP40-213ENST00000483216 IL2RAP01589 272 aa11.85□□□□□ -0.51
USP40-213ENST00000483216 GPC1P35052 558 aa11.85□□□□□ -0.51
USP40-213ENST00000483216 CTSOP43234 321 aaPredicted RBP11.85□□□□□ -0.51
USP40-213ENST00000483216 RNF144AP50876 292 aaPredicted RBP11.85□□□□□ -0.51
USP40-213ENST00000483216 CLDN10P78369 228 aa11.85□□□□□ -0.51
USP40-213ENST00000483216 LARGE2Q8N3Y3 721 aa11.85□□□□□ -0.51
USP40-213ENST00000483216 RAB6BQ9NRW1 208 aa11.85□□□□□ -0.51
USP40-213ENST00000483216 DNAAF2Q9NVR5 837 aaKnown RBP11.85□□□□□ -0.51
USP40-213ENST00000483216 C11orf95C9JLR9 678 aaPredicted RBP11.84□□□□□ -0.51
USP40-213ENST00000483216 MEN1O00255 615 aa11.84□□□□□ -0.51
USP40-213ENST00000483216 GDF10P55107 478 aa11.84□□□□□ -0.51
USP40-213ENST00000483216 SRPK2P78362 688 aaKnown RBP11.84□□□□□ -0.51
USP40-213ENST00000483216 CNKSR1Q969H4 720 aa11.84□□□□□ -0.51
USP40-213ENST00000483216 NLRP3Q96P20 1036 aa11.84□□□□□ -0.51
USP40-213ENST00000483216 POLMQ9NP87 494 aaPredicted RBP11.84□□□□□ -0.51
USP40-213ENST00000483216 HRH3Q9Y5N1 445 aa11.84□□□□□ -0.51
USP40-213ENST00000483216 INHAP05111 366 aa11.83□□□□□ -0.52
USP40-213ENST00000483216 RASA1P20936 1047 aa11.83□□□□□ -0.52
USP40-213ENST00000483216 PSME1Q06323 249 aa11.83□□□□□ -0.52
USP40-213ENST00000483216 FAM196BA6NMK8 535 aa11.82□□□□□ -0.52
USP40-213ENST00000483216 TMEM229AB2RXF0 380 aa11.82□□□□□ -0.52
USP40-213ENST00000483216 STAU1O95793 577 aaKnown RBP11.82□□□□□ -0.52
USP40-213ENST00000483216 FOXD4L5Q5VV16 416 aaPredicted RBP11.82□□□□□ -0.52
USP40-213ENST00000483216 LARP1Q6PKG0 1096 aaKnown RBP11.82□□□□□ -0.52
USP40-213ENST00000483216 SIX5Q8N196 739 aa11.82□□□□□ -0.52
USP40-213ENST00000483216 KIAA1024Q9UPX6 916 aa11.82□□□□□ -0.52
USP40-213ENST00000483216 SNRPBP14678 240 aaKnown RBP11.81□□□□□ -0.52
USP40-213ENST00000483216 CCDC102BQ68D86 513 aa11.81□□□□□ -0.52
USP40-213ENST00000483216 ZNF787Q6DD87 383 aa11.81□□□□□ -0.52
USP40-213ENST00000483216 RNF217Q8TC41 542 aa11.81□□□□□ -0.52
USP40-213ENST00000483216 DKK1O94907 266 aa11.8□□□□□ -0.52
USP40-213ENST00000483216 PTK7Q13308 1070 aa11.8□□□□□ -0.52
USP40-213ENST00000483216 CRTC2Q53ET0 693 aaPredicted RBP11.8□□□□□ -0.52
USP40-213ENST00000483216 TPCN2Q8NHX9 752 aa11.8□□□□□ -0.52
USP40-213ENST00000483216 PBXIP1Q96AQ6 731 aa11.8□□□□□ -0.52
USP40-213ENST00000483216 SLC4A9Q96Q91 983 aa11.8□□□□□ -0.52
USP40-213ENST00000483216 DNMT3LQ9UJW3 386 aa11.8□□□□□ -0.52
USP40-213ENST00000483216 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.79□□□□□ -0.52
USP40-213ENST00000483216 USP17L15C9J2P7 530 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms