RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 POLR3GLQ9BT43 218 aa21.18■□□□□ 0.98
LIMS3-203ENST00000480744 ATF5Q9Y2D1 282 aaPredicted RBP21.18■□□□□ 0.98
LIMS3-203ENST00000480744 CARD14Q9BXL6 1004 aa21.17■□□□□ 0.98
LIMS3-203ENST00000480744 FLT4P35916 1363 aa21.16■□□□□ 0.98
LIMS3-203ENST00000480744 HSP90AB2PQ58FF8 381 aa21.16■□□□□ 0.98
LIMS3-203ENST00000480744 INSRP06213 1382 aa21.15■□□□□ 0.98
LIMS3-203ENST00000480744 RAPGEF4Q8WZA2 1011 aa21.15■□□□□ 0.98
LIMS3-203ENST00000480744 MAP2P11137 1827 aaKnown RBP21.15■□□□□ 0.98
LIMS3-203ENST00000480744 PRIM1P49642 420 aaKnown RBP21.14■□□□□ 0.97
LIMS3-203ENST00000480744 DCAF8L1A6NGE4 600 aa21.13■□□□□ 0.97
LIMS3-203ENST00000480744 TATP17735 454 aaPredicted RBP21.13■□□□□ 0.97
LIMS3-203ENST00000480744 LRRC4BQ9NT99 713 aa21.13■□□□□ 0.97
LIMS3-203ENST00000480744 LY75O60449 1722 aa21.12■□□□□ 0.97
LIMS3-203ENST00000480744 PPM1GO15355 546 aaPredicted RBP21.12■□□□□ 0.97
LIMS3-203ENST00000480744 ZNF827Q17R98 1081 aa21.12■□□□□ 0.97
LIMS3-203ENST00000480744 EMILIN1Q9Y6C2 1016 aa21.12■□□□□ 0.97
LIMS3-203ENST00000480744 KIF24Q5T7B8 1368 aa21.11■□□□□ 0.97
LIMS3-203ENST00000480744 CGNL1Q0VF96 1302 aa21.11■□□□□ 0.97
LIMS3-203ENST00000480744 PTGER2P43116 358 aa21.11■□□□□ 0.97
LIMS3-203ENST00000480744 CCER1Q8TC90 406 aaPredicted RBP21.11■□□□□ 0.97
LIMS3-203ENST00000480744 MTFR1LQ9H019 292 aa21.11■□□□□ 0.97
LIMS3-203ENST00000480744 ANKRD26Q9UPS8 1709 aa21.11■□□□□ 0.97
LIMS3-203ENST00000480744 TUBGCP6Q96RT7 1819 aa21.11■□□□□ 0.97
LIMS3-203ENST00000480744 QSER1Q2KHR3 1735 aa21.1■□□□□ 0.97
LIMS3-203ENST00000480744 SLC27A3Q5K4L6 730 aa21.1■□□□□ 0.97
LIMS3-203ENST00000480744 KCNQ4P56696 695 aa21.09■□□□□ 0.97
LIMS3-203ENST00000480744 NSD2O96028 1365 aa21.09■□□□□ 0.97
LIMS3-203ENST00000480744 EIF4G2P78344 907 aaKnown RBP eCLIP21.07■□□□□ 0.96
LIMS3-203ENST00000480744 PCDH11XQ9BZA7 1347 aa21.06■□□□□ 0.96
LIMS3-203ENST00000480744 PCDH11YQ9BZA8 1340 aa21.06■□□□□ 0.96
LIMS3-203ENST00000480744 HSPA5P11021 654 aaKnown RBP21.06■□□□□ 0.96
LIMS3-203ENST00000480744 AKT1S1Q96B36 256 aa21.06■□□□□ 0.96
LIMS3-203ENST00000480744 PKD1L3Q7Z443 1732 aa21.06■□□□□ 0.96
LIMS3-203ENST00000480744 ITGB4P16144 1822 aa21.05■□□□□ 0.96
LIMS3-203ENST00000480744 YY1P25490 414 aa21.04■□□□□ 0.96
LIMS3-203ENST00000480744 FHDC1Q9C0D6 1143 aaPredicted RBP21.04■□□□□ 0.96
LIMS3-203ENST00000480744 TFCP2L1Q9NZI6 479 aa21.04■□□□□ 0.96
LIMS3-203ENST00000480744 CCNL1Q9UK58 526 aaPredicted RBP21.04■□□□□ 0.96
LIMS3-203ENST00000480744 TOGARAM1Q9Y4F4 1720 aa21.04■□□□□ 0.96
LIMS3-203ENST00000480744 TNNT2P45379 298 aaPredicted RBP21.03■□□□□ 0.96
LIMS3-203ENST00000480744 SGIP1Q9BQI5 828 aa21.03■□□□□ 0.96
LIMS3-203ENST00000480744 ARXQ96QS3 562 aa21.02■□□□□ 0.96
LIMS3-203ENST00000480744 WASHC2AQ641Q2 1341 aa21.02■□□□□ 0.95
LIMS3-203ENST00000480744 PNPLA7Q6ZV29 1317 aa21.02■□□□□ 0.95
LIMS3-203ENST00000480744 SYT17Q9BSW7 474 aa21.01■□□□□ 0.95
LIMS3-203ENST00000480744 C5P01031 1676 aa21.01■□□□□ 0.95
LIMS3-203ENST00000480744 CYP27B1O15528 508 aa21■□□□□ 0.95
LIMS3-203ENST00000480744 MPRIPQ6WCQ1 1025 aa21■□□□□ 0.95
LIMS3-203ENST00000480744 POLKQ9UBT6 870 aa21■□□□□ 0.95
LIMS3-203ENST00000480744 TAF1LQ8IZX4 1826 aa20.99■□□□□ 0.95
LIMS3-203ENST00000480744 NCAPD2Q15021 1401 aa20.99■□□□□ 0.95
LIMS3-203ENST00000480744 KLHL34Q8N239 644 aa20.98■□□□□ 0.95
LIMS3-203ENST00000480744 SLC16A10Q8TF71 515 aa20.98■□□□□ 0.95
LIMS3-203ENST00000480744 EYA1Q99502 592 aa20.98■□□□□ 0.95
LIMS3-203ENST00000480744 PANK3Q9H999 370 aa20.98■□□□□ 0.95
LIMS3-203ENST00000480744 COL24A1Q17RW2 1714 aa20.98■□□□□ 0.95
LIMS3-203ENST00000480744 MSH5O43196 834 aa20.97■□□□□ 0.95
LIMS3-203ENST00000480744 POLD1P28340 1107 aa20.97■□□□□ 0.95
LIMS3-203ENST00000480744 SPG7Q9UQ90 795 aa20.97■□□□□ 0.95
LIMS3-203ENST00000480744 PALLDQ8WX93 1383 aa20.97■□□□□ 0.95
LIMS3-203ENST00000480744 EIF4A2Q14240 407 aaKnown RBP20.94■□□□□ 0.94
LIMS3-203ENST00000480744 CHD4Q14839 1912 aa20.93■□□□□ 0.94
LIMS3-203ENST00000480744 SMARCC1Q92922 1105 aaPredicted RBP20.92■□□□□ 0.94
LIMS3-203ENST00000480744 MAP3K5Q99683 1374 aa20.92■□□□□ 0.94
LIMS3-203ENST00000480744 C4BP0C0L5 1744 aa20.91■□□□□ 0.94
LIMS3-203ENST00000480744 COL23A1Q86Y22 540 aaPredicted RBP20.91■□□□□ 0.94
LIMS3-203ENST00000480744 PIGBQ92521 554 aa20.91■□□□□ 0.94
LIMS3-203ENST00000480744 NKX1-1Q15270 411 aaPredicted RBP20.9■□□□□ 0.94
LIMS3-203ENST00000480744 MORC1Q86VD1 984 aa20.9■□□□□ 0.94
LIMS3-203ENST00000480744 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.9■□□□□ 0.94
LIMS3-203ENST00000480744 IFNL2Q8IZJ0 200 aa20.89■□□□□ 0.93
LIMS3-203ENST00000480744 TMOD3Q9NYL9 352 aa20.89■□□□□ 0.93
LIMS3-203ENST00000480744 PHKG2P15735 406 aa20.88■□□□□ 0.93
LIMS3-203ENST00000480744 MSL1Q68DK7 614 aa20.88■□□□□ 0.93
LIMS3-203ENST00000480744 UBR3Q6ZT12 1888 aa20.88■□□□□ 0.93
LIMS3-203ENST00000480744 HMGB2P26583 209 aaKnown RBP20.87■□□□□ 0.93
LIMS3-203ENST00000480744 PELP1Q8IZL8 1130 aaKnown RBP20.87■□□□□ 0.93
LIMS3-203ENST00000480744 AK7Q96M32 723 aa20.87■□□□□ 0.93
LIMS3-203ENST00000480744 KNSTRNQ9Y448 316 aa20.87■□□□□ 0.93
LIMS3-203ENST00000480744 IGSF1Q8N6C5 1336 aa20.86■□□□□ 0.93
LIMS3-203ENST00000480744 GPR162Q16538 588 aa20.86■□□□□ 0.93
LIMS3-203ENST00000480744 FLAD1Q8NFF5 587 aa20.85■□□□□ 0.93
LIMS3-203ENST00000480744 LOC102724428A0A0B4J2F2 783 aa20.83■□□□□ 0.93
LIMS3-203ENST00000480744 PHF14O94880 888 aa20.83■□□□□ 0.93
LIMS3-203ENST00000480744 SIK1P57059 783 aa20.83■□□□□ 0.93
LIMS3-203ENST00000480744 NLGN2Q8NFZ4 835 aa20.83■□□□□ 0.93
LIMS3-203ENST00000480744 ASAP1Q9ULH1 1129 aa20.83■□□□□ 0.93
LIMS3-203ENST00000480744 PLEKHO1Q53GL0 409 aaPredicted RBP20.82■□□□□ 0.92
LIMS3-203ENST00000480744 KIF7Q2M1P5 1343 aa20.81■□□□□ 0.92
LIMS3-203ENST00000480744 PLEKHG2Q9H7P9 1386 aa20.81■□□□□ 0.92
LIMS3-203ENST00000480744 ZNF530Q6P9A1 599 aaPredicted RBP20.8■□□□□ 0.92
LIMS3-203ENST00000480744 SMIM5Q71RC9 77 aa20.8■□□□□ 0.92
LIMS3-203ENST00000480744 AEBP1Q8IUX7 1158 aa20.8■□□□□ 0.92
LIMS3-203ENST00000480744 LINC00116Q8NCU8 138 aa20.8■□□□□ 0.92
LIMS3-203ENST00000480744 ATP6V1AP38606 617 aa20.79■□□□□ 0.92
LIMS3-203ENST00000480744 AMIGO3Q86WK7 504 aa20.79■□□□□ 0.92
LIMS3-203ENST00000480744 ATG3Q9NT62 314 aa20.79■□□□□ 0.92
LIMS3-203ENST00000480744 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.78■□□□□ 0.92
LIMS3-203ENST00000480744 HSP90AB1P08238 724 aaKnown RBP20.78■□□□□ 0.92
LIMS3-203ENST00000480744 ITPK1Q13572 414 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms