RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 PLEKHO1Q53GL0 409 aaPredicted RBP11□□□□□ -0.65
USP54-212ENST00000480210 SULT6B1Q6IMI4 303 aa11□□□□□ -0.65
USP54-212ENST00000480210 SPG7Q9UQ90 795 aa11□□□□□ -0.65
USP54-212ENST00000480210 A0A0G2JS52 829 aa10.99□□□□□ -0.65
USP54-212ENST00000480210 U2AF1L5P0DN76 240 aaPredicted RBP10.99□□□□□ -0.65
USP54-212ENST00000480210 U2AF1Q01081 240 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-212ENST00000480210 WDR43Q15061 677 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-212ENST00000480210 KRT27Q7Z3Y8 459 aa10.99□□□□□ -0.65
USP54-212ENST00000480210 ZCRB1Q8TBF4 217 aaKnown RBP10.99□□□□□ -0.65
USP54-212ENST00000480210 OVOS2A0A0G2JMS6 1433 aa10.98□□□□□ -0.65
USP54-212ENST00000480210 PKD1L3Q7Z443 1732 aa10.98□□□□□ -0.65
USP54-212ENST00000480210 HSP90AB1P08238 724 aaKnown RBP10.97□□□□□ -0.65
USP54-212ENST00000480210 LRRC37A3O60309 1634 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 BCL9O00512 1426 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 RGS12O14924 1447 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 TNS2Q63HR2 1409 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 PCDH11XQ9BZA7 1347 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 PCDH11YQ9BZA8 1340 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 FAM196AQ6ZSG2 479 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 IFNL2Q8IZJ0 200 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 USHBP1Q8N6Y0 703 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 GAS2L2Q8NHY3 880 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 MRS2Q9HD23 443 aa10.96□□□□□ -0.65
USP54-212ENST00000480210 HMOX1P09601 288 aa10.95□□□□□ -0.66
USP54-212ENST00000480210 CCDC125Q86Z20 511 aa10.95□□□□□ -0.66
USP54-212ENST00000480210 RSPH6AQ9H0K4 717 aa10.95□□□□□ -0.66
USP54-212ENST00000480210 MEGF6O75095 1541 aa10.94□□□□□ -0.66
USP54-212ENST00000480210 SBF2Q86WG5 1849 aa10.94□□□□□ -0.66
USP54-212ENST00000480210 NKX1-1Q15270 411 aaPredicted RBP10.94□□□□□ -0.66
USP54-212ENST00000480210 C1orf141Q5JVX7 400 aa10.94□□□□□ -0.66
USP54-212ENST00000480210 VIRMAQ69YN4 1812 aaKnown RBP10.93□□□□□ -0.66
USP54-212ENST00000480210 SHANK3Q9BYB0 1731 aa10.93□□□□□ -0.66
USP54-212ENST00000480210 MAPK8IP3Q9UPT6 1336 aa10.93□□□□□ -0.66
USP54-212ENST00000480210 HTATSF1O43719 755 aaKnown RBP10.93□□□□□ -0.66
USP54-212ENST00000480210 HMGB2P26583 209 aaKnown RBP10.93□□□□□ -0.66
USP54-212ENST00000480210 PRKAR2BP31323 418 aa10.93□□□□□ -0.66
USP54-212ENST00000480210 AKAP4Q5JQC9 854 aa10.93□□□□□ -0.66
USP54-212ENST00000480210 AEBP1Q8IUX7 1158 aa10.93□□□□□ -0.66
USP54-212ENST00000480210 PNISRQ8TF01 805 aaKnown RBP10.93□□□□□ -0.66
USP54-212ENST00000480210 NCBP3Q53F19 620 aaKnown RBP10.92□□□□□ -0.66
USP54-212ENST00000480210 MARCH10Q8NA82 808 aaPredicted RBP10.92□□□□□ -0.66
USP54-212ENST00000480210 DDX54Q8TDD1 881 aaKnown RBP10.92□□□□□ -0.66
USP54-212ENST00000480210 RUNDC1Q96C34 613 aa10.92□□□□□ -0.66
USP54-212ENST00000480210 PLEKHF1Q96S99 279 aa10.92□□□□□ -0.66
USP54-212ENST00000480210 ADAMTS8Q9UP79 889 aa10.92□□□□□ -0.66
USP54-212ENST00000480210 PHKG2P15735 406 aa10.91□□□□□ -0.66
USP54-212ENST00000480210 ZNF530Q6P9A1 599 aaPredicted RBP10.91□□□□□ -0.66
USP54-212ENST00000480210 NGEFQ8N5V2 710 aa10.91□□□□□ -0.66
USP54-212ENST00000480210 DCAF5Q96JK2 942 aa10.91□□□□□ -0.66
USP54-212ENST00000480210 DLG5Q8TDM6 1919 aa10.91□□□□□ -0.66
USP54-212ENST00000480210 SCN11AQ9UI33 1791 aa10.9□□□□□ -0.66
USP54-212ENST00000480210 ERVV-2B6SEH9 535 aa10.9□□□□□ -0.66
USP54-212ENST00000480210 CYP27B1O15528 508 aa10.9□□□□□ -0.66
USP54-212ENST00000480210 LMOD3Q0VAK6 560 aa10.9□□□□□ -0.66
USP54-212ENST00000480210 MTHFSDQ2M296 383 aaKnown RBP10.9□□□□□ -0.66
USP54-212ENST00000480210 ITGB4P16144 1822 aa10.89□□□□□ -0.67
USP54-212ENST00000480210 GNAT3A8MTJ3 354 aa10.89□□□□□ -0.67
USP54-212ENST00000480210 SF3B2Q13435 895 aaKnown RBP10.89□□□□□ -0.67
USP54-212ENST00000480210 CCDC184Q52MB2 194 aa10.89□□□□□ -0.67
USP54-212ENST00000480210 MIER1Q8N108 512 aa10.89□□□□□ -0.67
USP54-212ENST00000480210 RTF1Q92541 710 aaKnown RBP10.89□□□□□ -0.67
USP54-212ENST00000480210 NFE2L2Q16236 605 aa10.88□□□□□ -0.67
USP54-212ENST00000480210 PHACTR3Q96KR7 559 aa10.88□□□□□ -0.67
USP54-212ENST00000480210 BCL11BQ9C0K0 894 aaPredicted RBP10.88□□□□□ -0.67
USP54-212ENST00000480210 ILDR2Q71H61 639 aa10.87□□□□□ -0.67
USP54-212ENST00000480210 NHSQ6T4R5 1651 aa10.87□□□□□ -0.67
USP54-212ENST00000480210 MAP3K5Q99683 1374 aa10.87□□□□□ -0.67
USP54-212ENST00000480210 ADAMTS7Q9UKP4 1686 aa10.86□□□□□ -0.67
USP54-212ENST00000480210 RNMTO43148 476 aaKnown RBP10.86□□□□□ -0.67
USP54-212ENST00000480210 TMPOP42166 694 aaKnown RBP10.86□□□□□ -0.67
USP54-212ENST00000480210 FAM9BQ8IZU0 186 aa10.86□□□□□ -0.67
USP54-212ENST00000480210 DOT1LQ8TEK3 1739 aa10.85□□□□□ -0.67
USP54-212ENST00000480210 PLSCR1O15162 318 aa10.85□□□□□ -0.67
USP54-212ENST00000480210 RIPK4P57078 832 aa10.85□□□□□ -0.67
USP54-212ENST00000480210 SMARCC1Q92922 1105 aaPredicted RBP10.85□□□□□ -0.67
USP54-212ENST00000480210 TRIM37O94972 964 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 BAG6P46379 1132 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 PRIM1P49642 420 aaKnown RBP10.84□□□□□ -0.67
USP54-212ENST00000480210 CABP4P57796 275 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 CALD1Q05682 793 aaKnown RBP10.84□□□□□ -0.67
USP54-212ENST00000480210 TEFQ10587 303 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 CCDC27Q2M243 656 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 MPRIPQ6WCQ1 1025 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 BABAM1Q9NWV8 329 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 TMOD3Q9NYL9 352 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 RGPD3A6NKT7 1758 aaPredicted RBP10.84□□□□□ -0.67
USP54-212ENST00000480210 RGPD4Q7Z3J3 1758 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 BTAF1O14981 1849 aa10.84□□□□□ -0.67
USP54-212ENST00000480210 CEMIPQ8WUJ3 1361 aa10.83□□□□□ -0.68
USP54-212ENST00000480210 APAF1O14727 1248 aa10.83□□□□□ -0.68
USP54-212ENST00000480210 FAM182BQ5T319 152 aa10.83□□□□□ -0.68
USP54-212ENST00000480210 CCDC146Q8IYE0 955 aa10.83□□□□□ -0.68
USP54-212ENST00000480210 IL17REQ8NFR9 667 aa10.83□□□□□ -0.68
USP54-212ENST00000480210 UPF1Q92900 1129 aaKnown RBP eCLIP10.83□□□□□ -0.68
USP54-212ENST00000480210 SLC52A2Q9HAB3 445 aa10.83□□□□□ -0.68
USP54-212ENST00000480210 TNS1Q9HBL0 1735 aaKnown RBP10.82□□□□□ -0.68
USP54-212ENST00000480210 TOGARAM1Q9Y4F4 1720 aa10.82□□□□□ -0.68
USP54-212ENST00000480210 SYTL4Q96C24 671 aaPredicted RBP10.82□□□□□ -0.68
USP54-212ENST00000480210 ACSBG1Q96GR2 724 aa10.82□□□□□ -0.68
USP54-212ENST00000480210 LGR6Q9HBX8 967 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms