RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 DCTN1Q14203 1278 aa22.77■■□□□ 1.24
CCDC88B-207ENST00000479965 UPF3BQ9BZI7 483 aaKnown RBP22.77■■□□□ 1.24
CCDC88B-207ENST00000479965 PTCH1Q13635 1447 aa22.77■■□□□ 1.24
CCDC88B-207ENST00000479965 FAM83GA6ND36 823 aa22.76■■□□□ 1.23
CCDC88B-207ENST00000479965 PDCL2Q8N4E4 241 aa22.76■■□□□ 1.23
CCDC88B-207ENST00000479965 MYO3AQ8NEV4 1616 aa22.76■■□□□ 1.23
CCDC88B-207ENST00000479965 PIK3R4Q99570 1358 aa22.75■■□□□ 1.23
CCDC88B-207ENST00000479965 ANKRD44Q8N8A2 993 aa22.75■■□□□ 1.23
CCDC88B-207ENST00000479965 ANO2Q9NQ90 1003 aa22.75■■□□□ 1.23
CCDC88B-207ENST00000479965 ZFYVE16Q7Z3T8 1539 aa22.74■■□□□ 1.23
CCDC88B-207ENST00000479965 KRT24Q2M2I5 525 aa22.74■■□□□ 1.23
CCDC88B-207ENST00000479965 PALD1Q9ULE6 856 aa22.74■■□□□ 1.23
CCDC88B-207ENST00000479965 U2AF2P26368 475 aaKnown RBP eCLIP22.73■■□□□ 1.23
CCDC88B-207ENST00000479965 SPC24Q8NBT2 197 aa22.73■■□□□ 1.23
CCDC88B-207ENST00000479965 KIF1BO60333 1816 aa22.73■■□□□ 1.23
CCDC88B-207ENST00000479965 CHAF1AQ13111 956 aaPredicted RBP22.73■■□□□ 1.23
CCDC88B-207ENST00000479965 CEP85Q6P2H3 762 aa22.73■■□□□ 1.23
CCDC88B-207ENST00000479965 IFT57Q9NWB7 429 aa22.73■■□□□ 1.23
CCDC88B-207ENST00000479965 COL3A1P02461 1466 aaPredicted RBP22.72■■□□□ 1.23
CCDC88B-207ENST00000479965 FAM184AQ8NB25 1140 aa22.72■■□□□ 1.23
CCDC88B-207ENST00000479965 RILPL2Q969X0 211 aa22.72■■□□□ 1.23
CCDC88B-207ENST00000479965 GTPBP4Q9BZE4 634 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-207ENST00000479965 NRXN1Q9ULB1 1477 aa22.71■■□□□ 1.23
CCDC88B-207ENST00000479965 MROH2AA6NES4 1674 aa22.71■■□□□ 1.23
CCDC88B-207ENST00000479965 MEIS3Q99687 375 aa22.71■■□□□ 1.23
CCDC88B-207ENST00000479965 MCCP23508 829 aa22.71■■□□□ 1.23
CCDC88B-207ENST00000479965 FKBP5Q13451 457 aaPredicted RBP22.71■■□□□ 1.23
CCDC88B-207ENST00000479965 HDGFL2Q7Z4V5 671 aaPredicted RBP22.71■■□□□ 1.23
CCDC88B-207ENST00000479965 USP32Q8NFA0 1604 aa22.7■■□□□ 1.22
CCDC88B-207ENST00000479965 CFAP65Q6ZU64 1925 aaKnown RBP22.7■■□□□ 1.22
CCDC88B-207ENST00000479965 TULP4Q9NRJ4 1543 aa22.7■■□□□ 1.22
CCDC88B-207ENST00000479965 TRIM6-TRIM34B2RNG4 842 aa22.7■■□□□ 1.22
CCDC88B-207ENST00000479965 RPAP2Q8IXW5 612 aaPredicted RBP22.7■■□□□ 1.22
CCDC88B-207ENST00000479965 BCL11BQ9C0K0 894 aaPredicted RBP22.7■■□□□ 1.22
CCDC88B-207ENST00000479965 RIOK3O14730 519 aaKnown RBP22.69■■□□□ 1.22
CCDC88B-207ENST00000479965 GTF2F1P35269 517 aaKnown RBP eCLIP22.69■■□□□ 1.22
CCDC88B-207ENST00000479965 MCM2P49736 904 aa22.69■■□□□ 1.22
CCDC88B-207ENST00000479965 CNPY2Q9Y2B0 182 aa22.68■■□□□ 1.22
CCDC88B-207ENST00000479965 UVSSAQ2YD98 709 aa22.68■■□□□ 1.22
CCDC88B-207ENST00000479965 SLC4A10Q6U841 1118 aa22.68■■□□□ 1.22
CCDC88B-207ENST00000479965 DTNBO60941 627 aa22.68■■□□□ 1.22
CCDC88B-207ENST00000479965 CCDC183Q5T5S1 534 aa22.68■■□□□ 1.22
CCDC88B-207ENST00000479965 LARP6Q9BRS8 491 aaKnown RBP22.68■■□□□ 1.22
CCDC88B-207ENST00000479965 CABP1Q9NZU7 370 aa22.68■■□□□ 1.22
CCDC88B-207ENST00000479965 POLKQ9UBT6 870 aa22.67■■□□□ 1.22
CCDC88B-207ENST00000479965 PPRC1Q5VV67 1664 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-207ENST00000479965 FIBPO43427 364 aa22.67■■□□□ 1.22
CCDC88B-207ENST00000479965 PDE1AP54750 535 aa22.67■■□□□ 1.22
CCDC88B-207ENST00000479965 PUS7Q96PZ0 661 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-207ENST00000479965 ADGRB1O14514 1584 aa22.67■■□□□ 1.22
CCDC88B-207ENST00000479965 SETBP1Q9Y6X0 1596 aa22.67■■□□□ 1.22
CCDC88B-207ENST00000479965 GIMAP6Q6P9H5 292 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 PYCARDQ9ULZ3 195 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 EXOC6BQ9Y2D4 811 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 KIF20AO95235 890 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 CUL4AQ13619 759 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 DIAPH3Q9NSV4 1193 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 EMILIN1Q9Y6C2 1016 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 WDR33Q9C0J8 1336 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 LRRC7Q96NW7 1537 aa22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.66■■□□□ 1.22
CCDC88B-207ENST00000479965 KDM4AO75164 1064 aa22.65■■□□□ 1.22
CCDC88B-207ENST00000479965 LETM1O95202 739 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-207ENST00000479965 SRCIN1Q9C0H9 1055 aa22.65■■□□□ 1.22
CCDC88B-207ENST00000479965 VGFO15240 615 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-207ENST00000479965 PRAM1Q96QH2 718 aa22.65■■□□□ 1.22
CCDC88B-207ENST00000479965 ZNF771Q7L3S4 317 aaPredicted RBP22.64■■□□□ 1.22
CCDC88B-207ENST00000479965 ESYT1Q9BSJ8 1104 aa22.64■■□□□ 1.22
CCDC88B-207ENST00000479965 ATP7AQ04656 1500 aa22.64■■□□□ 1.22
CCDC88B-207ENST00000479965 DEPDC5O75140 1603 aa22.64■■□□□ 1.22
CCDC88B-207ENST00000479965 SPTLC3Q9NUV7 552 aa22.64■■□□□ 1.21
CCDC88B-207ENST00000479965 MSH6P52701 1360 aa22.64■■□□□ 1.21
CCDC88B-207ENST00000479965 REREQ9P2R6 1566 aa22.63■■□□□ 1.21
CCDC88B-207ENST00000479965 ZNF853P0CG23 659 aa22.63■■□□□ 1.21
CCDC88B-207ENST00000479965 MX1P20591 662 aa22.63■■□□□ 1.21
CCDC88B-207ENST00000479965 FAM135BQ49AJ0 1406 aa22.63■■□□□ 1.21
CCDC88B-207ENST00000479965 INO80Q9ULG1 1556 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-207ENST00000479965 INTS4Q96HW7 963 aaKnown RBP22.63■■□□□ 1.21
CCDC88B-207ENST00000479965 FGD1P98174 961 aa22.62■■□□□ 1.21
CCDC88B-207ENST00000479965 BBXQ8WY36 941 aaPredicted RBP22.62■■□□□ 1.21
CCDC88B-207ENST00000479965 HMMRO75330 724 aa22.62■■□□□ 1.21
CCDC88B-207ENST00000479965 ATP10DQ9P241 1426 aa22.62■■□□□ 1.21
CCDC88B-207ENST00000479965 PNPLA6Q8IY17 1366 aa22.61■■□□□ 1.21
CCDC88B-207ENST00000479965 ERCC6L2Q5T890 1561 aa22.61■■□□□ 1.21
CCDC88B-207ENST00000479965 VWDEQ8N2E2 1590 aa22.61■■□□□ 1.21
CCDC88B-207ENST00000479965 KIAA1524Q8TCG1 905 aa22.61■■□□□ 1.21
CCDC88B-207ENST00000479965 CHMP3Q9Y3E7 222 aa22.61■■□□□ 1.21
CCDC88B-207ENST00000479965 RTL1A6NKG5 1358 aa22.61■■□□□ 1.21
CCDC88B-207ENST00000479965 ZC3H13Q5T200 1668 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-207ENST00000479965 NEURL4Q96JN8 1562 aa22.6■■□□□ 1.21
CCDC88B-207ENST00000479965 KCNF1Q9H3M0 494 aa22.6■■□□□ 1.21
CCDC88B-207ENST00000479965 EFCAB6Q5THR3 1501 aa22.6■■□□□ 1.21
CCDC88B-207ENST00000479965 CGNQ9P2M7 1197 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-207ENST00000479965 AP5Z1O43299 807 aa22.59■■□□□ 1.21
CCDC88B-207ENST00000479965 IFT172Q9UG01 1749 aa22.59■■□□□ 1.21
CCDC88B-207ENST00000479965 KNDC1Q76NI1 1749 aa22.59■■□□□ 1.21
CCDC88B-207ENST00000479965 LMOD3Q0VAK6 560 aa22.59■■□□□ 1.21
CCDC88B-207ENST00000479965 ADGRB3O60242 1522 aa22.59■■□□□ 1.21
CCDC88B-207ENST00000479965 F6X3S4 739 aa22.58■■□□□ 1.21
CCDC88B-207ENST00000479965 RPGRIP1LQ68CZ1 1315 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms