RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 RBM46Q8TBY0 533 aaKnown RBP9.46□□□□□ -0.9
USP48-208ENST00000479177 PXYLP1Q8TE99 480 aa9.46□□□□□ -0.9
USP48-208ENST00000479177 SETD1BQ9UPS6 1966 aaKnown RBP9.46□□□□□ -0.9
USP48-208ENST00000479177 PIK3C2GO75747 1445 aa9.46□□□□□ -0.9
USP48-208ENST00000479177 ZFYVE9O95405 1425 aa9.46□□□□□ -0.9
USP48-208ENST00000479177 RCCD1A6NED2 376 aa9.45□□□□□ -0.9
USP48-208ENST00000479177 ZMYND10O75800 440 aa9.45□□□□□ -0.9
USP48-208ENST00000479177 MAP2K5Q13163 448 aa9.45□□□□□ -0.9
USP48-208ENST00000479177 ZNF326Q5BKZ1 582 aaKnown RBP9.45□□□□□ -0.9
USP48-208ENST00000479177 SWT1Q5T5J6 900 aaKnown RBP9.45□□□□□ -0.9
USP48-208ENST00000479177 GPRASP1Q5JY77 1395 aa9.45□□□□□ -0.9
USP48-208ENST00000479177 RIMS2Q9UQ26 1411 aa9.45□□□□□ -0.9
USP48-208ENST00000479177 ADGRF5Q8IZF2 1346 aa9.44□□□□□ -0.9
USP48-208ENST00000479177 ARHGAP23Q9P227 1491 aa9.44□□□□□ -0.9
USP48-208ENST00000479177 SLIT1O75093 1534 aa9.44□□□□□ -0.9
USP48-208ENST00000479177 IQGAP1P46940 1657 aa9.43□□□□□ -0.9
USP48-208ENST00000479177 IRF6O14896 467 aa9.43□□□□□ -0.9
USP48-208ENST00000479177 ZPR1O75312 459 aa9.43□□□□□ -0.9
USP48-208ENST00000479177 HDGFP51858 240 aaKnown RBP9.43□□□□□ -0.9
USP48-208ENST00000479177 BARGINQ6ZT62 677 aa9.43□□□□□ -0.9
USP48-208ENST00000479177 CCDC102AQ96A19 550 aa9.43□□□□□ -0.9
USP48-208ENST00000479177 SETBP1Q9Y6X0 1596 aa9.42□□□□□ -0.9
USP48-208ENST00000479177 ROCK2O75116 1388 aaKnown RBP9.42□□□□□ -0.9
USP48-208ENST00000479177 TMEM2Q9UHN6 1383 aa9.42□□□□□ -0.9
USP48-208ENST00000479177 OATP04181 439 aa9.42□□□□□ -0.9
USP48-208ENST00000479177 GGCXP38435 758 aa9.42□□□□□ -0.9
USP48-208ENST00000479177 MYT1Q01538 1121 aa9.42□□□□□ -0.9
USP48-208ENST00000479177 TMUB1Q9BVT8 246 aa9.42□□□□□ -0.9
USP48-208ENST00000479177 SETD1AO15047 1707 aaKnown RBP9.42□□□□□ -0.9
USP48-208ENST00000479177 NRXN3Q9Y4C0 1643 aa9.42□□□□□ -0.9
USP48-208ENST00000479177 ADGRB1O14514 1584 aa9.41□□□□□ -0.9
USP48-208ENST00000479177 ASXL1Q8IXJ9 1541 aa9.41□□□□□ -0.9
USP48-208ENST00000479177 RNF223E7ERA6 249 aa9.41□□□□□ -0.9
USP48-208ENST00000479177 DNAJB2P25686 324 aa9.41□□□□□ -0.9
USP48-208ENST00000479177 SLC19A1P41440 591 aa9.41□□□□□ -0.9
USP48-208ENST00000479177 TMEM134Q9H6X4 195 aa9.41□□□□□ -0.9
USP48-208ENST00000479177 USP47Q96K76 1375 aa9.4□□□□□ -0.9
USP48-208ENST00000479177 MINK1Q8N4C8 1332 aaPredicted RBP9.4□□□□□ -0.9
USP48-208ENST00000479177 KRI1Q8N9T8 703 aaKnown RBP9.4□□□□□ -0.9
USP48-208ENST00000479177 NBPF1Q3BBV0 1214 aa9.39□□□□□ -0.91
USP48-208ENST00000479177 ALKQ9UM73 1620 aa9.38□□□□□ -0.91
USP48-208ENST00000479177 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.38□□□□□ -0.91
USP48-208ENST00000479177 PPEF1O14829 653 aaPredicted RBP9.38□□□□□ -0.91
USP48-208ENST00000479177 HSPA5P11021 654 aaKnown RBP9.38□□□□□ -0.91
USP48-208ENST00000479177 NUTM2DQ5VT03 806 aaPredicted RBP9.38□□□□□ -0.91
USP48-208ENST00000479177 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP48-208ENST00000479177 CARD11Q9BXL7 1154 aa9.38□□□□□ -0.91
USP48-208ENST00000479177 SCAF11Q99590 1463 aaKnown RBP9.38□□□□□ -0.91
USP48-208ENST00000479177 PLEKHG1Q9ULL1 1385 aa9.37□□□□□ -0.91
USP48-208ENST00000479177 EIF4G2P78344 907 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP48-208ENST00000479177 CFAP70Q5T0N1 1121 aa9.37□□□□□ -0.91
USP48-208ENST00000479177 SPRYD7Q5W111 196 aa9.37□□□□□ -0.91
USP48-208ENST00000479177 BLOC1S3Q6QNY0 202 aa9.37□□□□□ -0.91
USP48-208ENST00000479177 SLF2Q8IX21 1173 aa9.37□□□□□ -0.91
USP48-208ENST00000479177 C14orf93Q9H972 538 aaKnown RBP9.37□□□□□ -0.91
USP48-208ENST00000479177 DIP2AQ14689 1571 aa9.37□□□□□ -0.91
USP48-208ENST00000479177 POLR1AO95602 1720 aaPredicted RBP9.36□□□□□ -0.91
USP48-208ENST00000479177 TLL1O43897 1013 aa9.36□□□□□ -0.91
USP48-208ENST00000479177 PKDCCQ504Y2 493 aa9.36□□□□□ -0.91
USP48-208ENST00000479177 LIAT1Q6ZQX7 453 aa9.36□□□□□ -0.91
USP48-208ENST00000479177 THEMISQ8N1K5 641 aaPredicted RBP9.36□□□□□ -0.91
USP48-208ENST00000479177 ADAMTS13Q76LX8 1427 aa9.36□□□□□ -0.91
USP48-208ENST00000479177 ARHGEF28Q8N1W1 1705 aaKnown RBP9.36□□□□□ -0.91
USP48-208ENST00000479177 MED14O60244 1454 aa9.35□□□□□ -0.91
USP48-208ENST00000479177 DGAT1O75907 488 aa9.35□□□□□ -0.91
USP48-208ENST00000479177 LTKP29376 864 aa9.35□□□□□ -0.91
USP48-208ENST00000479177 MDM2Q00987 491 aaPredicted RBP9.35□□□□□ -0.91
USP48-208ENST00000479177 KNDC1Q76NI1 1749 aa9.35□□□□□ -0.91
USP48-208ENST00000479177 SLC24A3Q9HC58 644 aa9.35□□□□□ -0.91
USP48-208ENST00000479177 PCDHB3Q9Y5E6 796 aa9.35□□□□□ -0.91
USP48-208ENST00000479177 SLC10A3P09131 477 aa9.34□□□□□ -0.91
USP48-208ENST00000479177 EIF3AQ14152 1382 aaKnown RBP9.34□□□□□ -0.91
USP48-208ENST00000479177 LMTK3Q96Q04 1460 aa9.34□□□□□ -0.91
USP48-208ENST00000479177 DLC1Q96QB1 1528 aa9.33□□□□□ -0.92
USP48-208ENST00000479177 ZNF598Q86UK7 904 aaKnown RBP9.33□□□□□ -0.92
USP48-208ENST00000479177 HIRIP3Q9BW71 556 aaPredicted RBP9.33□□□□□ -0.92
USP48-208ENST00000479177 REPIN1Q9BWE0 567 aaKnown RBP9.33□□□□□ -0.92
USP48-208ENST00000479177 EID1Q9Y6B2 187 aa9.33□□□□□ -0.92
USP48-208ENST00000479177 QRICH2Q9H0J4 1663 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 YTHDC2Q9H6S0 1430 aaKnown RBP9.32□□□□□ -0.92
USP48-208ENST00000479177 CPS1P31327 1500 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 PRR20EP86478 221 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 PRR20CP86479 221 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 PRR20DP86480 221 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 PRR20BP86481 221 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 PRR20AP86496 221 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 TXNDC2Q86VQ3 553 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 NECTIN2Q92692 538 aa9.32□□□□□ -0.92
USP48-208ENST00000479177 DAXXQ9UER7 740 aaPredicted RBP9.32□□□□□ -0.92
USP48-208ENST00000479177 TECPR2O15040 1411 aa9.31□□□□□ -0.92
USP48-208ENST00000479177 XRN1Q8IZH2 1706 aaKnown RBP9.31□□□□□ -0.92
USP48-208ENST00000479177 ST20-MTHFSA0A0A6YYL1 179 aa9.31□□□□□ -0.92
USP48-208ENST00000479177 DDX11L8A8MPP1 907 aa9.31□□□□□ -0.92
USP48-208ENST00000479177 TNFRSF10AO00220 468 aa9.31□□□□□ -0.92
USP48-208ENST00000479177 GDF9O60383 454 aa9.31□□□□□ -0.92
USP48-208ENST00000479177 S1PR4O95977 384 aa9.31□□□□□ -0.92
USP48-208ENST00000479177 LCE2AQ5TA79 106 aaPredicted RBP9.31□□□□□ -0.92
USP48-208ENST00000479177 METP08581 1390 aa9.31□□□□□ -0.92
USP48-208ENST00000479177 LRPPRCP42704 1394 aaKnown RBP9.31□□□□□ -0.92
USP48-208ENST00000479177 CCDC7Q96M83 1385 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms