RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 CCDC61Q9Y6R9 512 aa10.38□□□□□ -0.75
HLA-DPA1-247ENST00000479107 IQSEC2Q5JU85 1478 aa10.38□□□□□ -0.75
HLA-DPA1-247ENST00000479107 ZKSCAN1P17029 563 aaPredicted RBP10.38□□□□□ -0.75
HLA-DPA1-247ENST00000479107 SAMD9Q5K651 1589 aa10.38□□□□□ -0.75
HLA-DPA1-247ENST00000479107 TRIM37O94972 964 aa10.38□□□□□ -0.75
HLA-DPA1-247ENST00000479107 TPD52L1Q16890 204 aaPredicted RBP10.38□□□□□ -0.75
HLA-DPA1-247ENST00000479107 NUDT16Q96DE0 195 aaKnown RBP10.38□□□□□ -0.75
HLA-DPA1-247ENST00000479107 RIPK4P57078 832 aa10.37□□□□□ -0.75
HLA-DPA1-247ENST00000479107 CDK19Q9BWU1 502 aa10.37□□□□□ -0.75
HLA-DPA1-247ENST00000479107 TIAM1Q13009 1591 aa10.37□□□□□ -0.75
HLA-DPA1-247ENST00000479107 FAM135BQ49AJ0 1406 aa10.37□□□□□ -0.75
HLA-DPA1-247ENST00000479107 TCP11L2Q8N4U5 519 aa10.37□□□□□ -0.75
HLA-DPA1-247ENST00000479107 GCC1Q96CN9 775 aa10.37□□□□□ -0.75
HLA-DPA1-247ENST00000479107 CHMP3Q9Y3E7 222 aa10.37□□□□□ -0.75
HLA-DPA1-247ENST00000479107 BEGAINQ9BUH8 593 aa10.36□□□□□ -0.75
HLA-DPA1-247ENST00000479107 SAMD9LQ8IVG5 1584 aa10.36□□□□□ -0.75
HLA-DPA1-247ENST00000479107 CEP170BQ9Y4F5 1589 aaPredicted RBP10.36□□□□□ -0.75
HLA-DPA1-247ENST00000479107 VPS37CA5D8V6 355 aaPredicted RBP10.36□□□□□ -0.75
HLA-DPA1-247ENST00000479107 ACBD3Q9H3P7 528 aa10.36□□□□□ -0.75
HLA-DPA1-247ENST00000479107 PDCL2Q8N4E4 241 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 BCORL1Q5H9F3 1711 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 ERVK-7P63135 1459 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 UPF1Q92900 1129 aaKnown RBP eCLIP10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 ZMYM4Q5VZL5 1548 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 ARHGEF12Q9NZN5 1544 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 CCDC70Q6NSX1 233 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 TRIM5Q9C035 493 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 TPM1P09493 284 aa10.35□□□□□ -0.75
HLA-DPA1-247ENST00000479107 EN1Q05925 392 aaPredicted RBP10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 TBC1D2Q9BYX2 928 aa10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 DIAPH1O60610 1272 aaKnown RBP10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 CT47B1P0C2W7 299 aaPredicted RBP10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 CCDC112Q8NEF3 446 aa10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 NEK4P51957 841 aa10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 HSP90B2PQ58FF3 399 aa10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 MCM5P33992 734 aa10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 RBM42Q9BTD8 480 aaKnown RBP10.34□□□□□ -0.75
HLA-DPA1-247ENST00000479107 GNAI1P63096 354 aa10.33□□□□□ -0.76
HLA-DPA1-247ENST00000479107 SLFN5Q08AF3 891 aa10.33□□□□□ -0.76
HLA-DPA1-247ENST00000479107 MVPQ14764 893 aaKnown RBP10.33□□□□□ -0.76
HLA-DPA1-247ENST00000479107 ABCC5O15440 1437 aa10.33□□□□□ -0.76
HLA-DPA1-247ENST00000479107 CCDC73Q6ZRK6 1079 aa10.33□□□□□ -0.76
HLA-DPA1-247ENST00000479107 TTC5Q8N0Z6 440 aa10.33□□□□□ -0.76
HLA-DPA1-247ENST00000479107 SKAP1Q86WV1 359 aa10.33□□□□□ -0.76
HLA-DPA1-247ENST00000479107 WASLO00401 505 aaPredicted RBP10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 DYNC1I1O14576 645 aa10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 TSR1Q2NL82 804 aaKnown RBP10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 RNF20Q5VTR2 975 aa10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 NAT10Q9H0A0 1025 aaKnown RBP10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 XRCC6P12956 609 aaKnown RBP eCLIP10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 WDR63Q8IWG1 891 aa10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 SPG7Q9UQ90 795 aa10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 ATF5Q9Y2D1 282 aaPredicted RBP10.32□□□□□ -0.76
HLA-DPA1-247ENST00000479107 GRIN3BO60391 1043 aa10.31□□□□□ -0.76
HLA-DPA1-247ENST00000479107 CCDC192P0DO97 292 aa10.31□□□□□ -0.76
HLA-DPA1-247ENST00000479107 C20orf194Q5TEA3 1177 aa10.31□□□□□ -0.76
HLA-DPA1-247ENST00000479107 CABP2Q9NPB3 220 aa10.31□□□□□ -0.76
HLA-DPA1-247ENST00000479107 WDR33Q9C0J8 1336 aaKnown RBP10.31□□□□□ -0.76
HLA-DPA1-247ENST00000479107 PRDM10Q9NQV6 1147 aa10.31□□□□□ -0.76
HLA-DPA1-247ENST00000479107 CCP110O43303 1012 aa10.31□□□□□ -0.76
HLA-DPA1-247ENST00000479107 NAIPQ13075 1403 aa10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 SPC24Q8NBT2 197 aa10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 EXOSC9Q06265 439 aaKnown RBP10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 DEFB132Q7Z7B7 95 aa10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 SMARCC1Q92922 1105 aaPredicted RBP10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 DHX8Q14562 1220 aaKnown RBP10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 CHD1LQ86WJ1 897 aa10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 FLAD1Q8NFF5 587 aa10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 ACSBG1Q96GR2 724 aa10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 TNPO1Q92973 898 aaKnown RBP10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 PREX1Q8TCU6 1659 aa10.3□□□□□ -0.76
HLA-DPA1-247ENST00000479107 CBX1P83916 185 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 DIP2CQ9Y2E4 1556 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 PDCP20941 246 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 ATF7IPQ6VMQ6 1270 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 LEKR1Q6ZMV7 388 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 CREBRFQ8IUR6 639 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 FIBPO43427 364 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 APPP05067 770 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 TSPYL1Q9H0U9 437 aa10.29□□□□□ -0.76
HLA-DPA1-247ENST00000479107 SYCE3A1L190 88 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 TBC1D32Q96NH3 1257 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 NOS1P29475 1434 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 ERC2O15083 957 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 MTHFSP49914 203 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 GORABQ5T7V8 394 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 MPNDQ8N594 471 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 ERCC4Q92889 916 aaPredicted RBP10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 HOOK1Q9UJC3 728 aaKnown RBP10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 FAM83GA6ND36 823 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 GIGYF1O75420 1035 aaPredicted RBP10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 IPO7O95373 1038 aaKnown RBP10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 VPS72Q15906 364 aa10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 NOB1Q9ULX3 412 aaKnown RBP10.28□□□□□ -0.76
HLA-DPA1-247ENST00000479107 ZNF526Q8TF50 670 aaPredicted RBP10.27□□□□□ -0.76
HLA-DPA1-247ENST00000479107 AIDAQ96BJ3 306 aa10.27□□□□□ -0.76
HLA-DPA1-247ENST00000479107 TCOF1Q13428 1488 aaKnown RBP10.27□□□□□ -0.77
HLA-DPA1-247ENST00000479107 CCDC27Q2M243 656 aa10.27□□□□□ -0.77
HLA-DPA1-247ENST00000479107 HSP90AB4PQ58FF6 505 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms