RNA–Protein interactions for RNA: ENST00000478999.1

VPS45-208, Transcript of vacuolar protein sorting 45 homolog, human

TSL 2

Gene VPS45, Length 468 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-208	ENST00000478999	ST20-MTHFS	A0A0A6YYL1	179 aa		11.27	□□□□□ -0.61
VPS45-208	ENST00000478999	YBX3	P16989	372 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
VPS45-208	ENST00000478999	ACSBG1	Q96GR2	724 aa		11.27	□□□□□ -0.61
VPS45-208	ENST00000478999	LRRC4B	Q9NT99	713 aa		11.27	□□□□□ -0.61
VPS45-208	ENST00000478999	LY75	O60449	1722 aa		11.26	□□□□□ -0.61
VPS45-208	ENST00000478999	SOX12	O15370	315 aa		11.26	□□□□□ -0.61
VPS45-208	ENST00000478999	HSPA6	P17066	643 aa		11.26	□□□□□ -0.61
VPS45-208	ENST00000478999	FKBP8	Q14318	412 aa		11.26	□□□□□ -0.61
VPS45-208	ENST00000478999	CARD10	Q9BWT7	1032 aa		11.26	□□□□□ -0.61
VPS45-208	ENST00000478999	EXOC5	O00471	708 aa		11.25	□□□□□ -0.61
VPS45-208	ENST00000478999	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.25	□□□□□ -0.61
VPS45-208	ENST00000478999	USP54	Q70EL1	1684 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	POLD1	P28340	1107 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	CDCA8	Q53HL2	280 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	TMC1	Q8TDI8	760 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	SLC16A10	Q8TF71	515 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	AKT1S1	Q96B36	256 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	ZNF692	Q9BU19	519 aa	Predicted RBP	11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	PNPLA7	Q6ZV29	1317 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	NFAT5	O94916	1531 aa		11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	FAM208A	Q9UK61	1670 aa	Known RBP	11.24	□□□□□ -0.61
VPS45-208	ENST00000478999	KIF20B	Q96Q89	1820 aa		11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	CSB-PGBD3	P0DP91	1061 aa		11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	TMF1	P82094	1093 aa		11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	ARHGEF25	Q86VW2	580 aa		11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	TTC21A	Q8NDW8	1320 aa		11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	ADCY9	O60503	1353 aa		11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	SMG6	Q86US8	1419 aa	Known RBP	11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	DOT1L	Q8TEK3	1739 aa		11.23	□□□□□ -0.61
VPS45-208	ENST00000478999	GRIN3B	O60391	1043 aa		11.22	□□□□□ -0.61
VPS45-208	ENST00000478999	KCNH5	Q8NCM2	988 aa		11.22	□□□□□ -0.61
VPS45-208	ENST00000478999	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.22	□□□□□ -0.61
VPS45-208	ENST00000478999	TTC21B	Q7Z4L5	1316 aa		11.21	□□□□□ -0.61
VPS45-208	ENST00000478999	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.21	□□□□□ -0.61
VPS45-208	ENST00000478999	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
VPS45-208	ENST00000478999	TESK2	Q96S53	571 aa		11.21	□□□□□ -0.61
VPS45-208	ENST00000478999	RGPD2	P0DJD1	1756 aa		11.21	□□□□□ -0.62
VPS45-208	ENST00000478999	FAM9B	Q8IZU0	186 aa		11.2	□□□□□ -0.62
VPS45-208	ENST00000478999	ZNF526	Q8TF50	670 aa	Predicted RBP	11.2	□□□□□ -0.62
VPS45-208	ENST00000478999	WDR90	Q96KV7	1748 aa		11.19	□□□□□ -0.62
VPS45-208	ENST00000478999	CCDC184	Q52MB2	194 aa		11.19	□□□□□ -0.62
VPS45-208	ENST00000478999	PNISR	Q8TF01	805 aa	Known RBP	11.19	□□□□□ -0.62
VPS45-208	ENST00000478999	TAF1L	Q8IZX4	1826 aa		11.19	□□□□□ -0.62
VPS45-208	ENST00000478999	NPC1L1	Q9UHC9	1359 aa		11.18	□□□□□ -0.62
VPS45-208	ENST00000478999	SBNO2	Q9Y2G9	1366 aa		11.18	□□□□□ -0.62
VPS45-208	ENST00000478999	KCNQ4	P56696	695 aa		11.18	□□□□□ -0.62
VPS45-208	ENST00000478999	POLR3GL	Q9BT43	218 aa		11.18	□□□□□ -0.62
VPS45-208	ENST00000478999	C5	P01031	1676 aa		11.17	□□□□□ -0.62
VPS45-208	ENST00000478999	SLC27A3	Q5K4L6	730 aa		11.17	□□□□□ -0.62
VPS45-208	ENST00000478999	TERF2IP	Q9NYB0	399 aa		11.17	□□□□□ -0.62
VPS45-208	ENST00000478999	TFCP2L1	Q9NZI6	479 aa		11.17	□□□□□ -0.62
VPS45-208	ENST00000478999	IL2RB	P14784	551 aa		11.16	□□□□□ -0.62
VPS45-208	ENST00000478999	ERBB3	P21860	1342 aa		11.15	□□□□□ -0.62
VPS45-208	ENST00000478999	KIF3C	O14782	793 aa		11.15	□□□□□ -0.62
VPS45-208	ENST00000478999	PER1	O15534	1290 aa	Predicted RBP	11.15	□□□□□ -0.62
VPS45-208	ENST00000478999	PPP4R2	Q9NY27	417 aa		11.15	□□□□□ -0.62
VPS45-208	ENST00000478999	NUDC	Q9Y266	331 aa		11.15	□□□□□ -0.62
VPS45-208	ENST00000478999	EDC4	Q6P2E9	1401 aa	Known RBP	11.15	□□□□□ -0.62
VPS45-208	ENST00000478999	MSL1	Q68DK7	614 aa		11.14	□□□□□ -0.63
VPS45-208	ENST00000478999	COL23A1	Q86Y22	540 aa	Predicted RBP	11.14	□□□□□ -0.63
VPS45-208	ENST00000478999	DNAJC5G	Q8N7S2	189 aa		11.14	□□□□□ -0.63
VPS45-208	ENST00000478999	NLRP2	Q9NX02	1062 aa		11.14	□□□□□ -0.63
VPS45-208	ENST00000478999	TOGARAM1	Q9Y4F4	1720 aa		11.14	□□□□□ -0.63
VPS45-208	ENST00000478999	NSD2	O96028	1365 aa		11.14	□□□□□ -0.63
VPS45-208	ENST00000478999	MAP2	P11137	1827 aa	Known RBP	11.14	□□□□□ -0.63
VPS45-208	ENST00000478999	RNF123	Q5XPI4	1314 aa		11.13	□□□□□ -0.63
VPS45-208	ENST00000478999	NME9	Q86XW9	330 aa		11.13	□□□□□ -0.63
VPS45-208	ENST00000478999	SLC12A5	Q9H2X9	1139 aa		11.13	□□□□□ -0.63
VPS45-208	ENST00000478999		A0A1W2PP64	1363 aa		11.13	□□□□□ -0.63
VPS45-208	ENST00000478999	CIC	Q96RK0	1608 aa	Predicted RBP	11.13	□□□□□ -0.63
VPS45-208	ENST00000478999	CD163L1	Q9NR16	1453 aa		11.12	□□□□□ -0.63
VPS45-208	ENST00000478999	APLP1	P51693	650 aa		11.12	□□□□□ -0.63
VPS45-208	ENST00000478999	TSHZ2	Q9NRE2	1034 aa		11.12	□□□□□ -0.63
VPS45-208	ENST00000478999	UBR3	Q6ZT12	1888 aa		11.12	□□□□□ -0.63
VPS45-208	ENST00000478999	CAPN15	O75808	1086 aa		11.11	□□□□□ -0.63
VPS45-208	ENST00000478999	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.11	□□□□□ -0.63
VPS45-208	ENST00000478999	CD2AP	Q9Y5K6	639 aa		11.11	□□□□□ -0.63
VPS45-208	ENST00000478999	KIAA1551	Q9HCM1	1747 aa		11.11	□□□□□ -0.63
VPS45-208	ENST00000478999	USP31	Q70CQ4	1352 aa		11.11	□□□□□ -0.63
VPS45-208	ENST00000478999	ANKRD36B	Q8N2N9	1353 aa		11.11	□□□□□ -0.63
VPS45-208	ENST00000478999	DDX54	Q8TDD1	881 aa	Known RBP	11.1	□□□□□ -0.63
VPS45-208	ENST00000478999	SYTL4	Q96C24	671 aa	Predicted RBP	11.1	□□□□□ -0.63
VPS45-208	ENST00000478999	COG3	Q96JB2	828 aa		11.1	□□□□□ -0.63
VPS45-208	ENST00000478999	WWC3	Q9ULE0	1092 aa		11.1	□□□□□ -0.63
VPS45-208	ENST00000478999	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.1	□□□□□ -0.63
VPS45-208	ENST00000478999	ANKRD26	Q9UPS8	1709 aa		11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	PRIM1	P49642	420 aa	Known RBP	11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	ANKRD24	Q8TF21	1146 aa		11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	LTV1	Q96GA3	475 aa	Predicted RBP	11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	PANK3	Q9H999	370 aa		11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	CCNL1	Q9UK58	526 aa	Predicted RBP	11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	ITGB4	P16144	1822 aa		11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	KIF13B	Q9NQT8	1826 aa		11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	IGSF1	Q8N6C5	1336 aa		11.09	□□□□□ -0.63
VPS45-208	ENST00000478999	AMPH	P49418	695 aa		11.08	□□□□□ -0.64
VPS45-208	ENST00000478999	PUS7	Q96PZ0	661 aa	Known RBP	11.08	□□□□□ -0.64
VPS45-208	ENST00000478999	C4B	P0C0L5	1744 aa		11.08	□□□□□ -0.64
VPS45-208	ENST00000478999	BRCA1	P38398	1863 aa	Known RBP	11.08	□□□□□ -0.64
VPS45-208	ENST00000478999	KNSTRN	Q9Y448	316 aa		11.07	□□□□□ -0.64
VPS45-208	ENST00000478999	TOMM70	O94826	608 aa		11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms