RNA–Protein interactions for RNA: ENST00000478288.5

ABCF3-212, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 3

Gene ABCF3, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-212ENST00000478288 MAP3K5Q99683 1374 aa18.17■□□□□ 0.5
ABCF3-212ENST00000478288 DDX54Q8TDD1 881 aaKnown RBP18.17■□□□□ 0.5
ABCF3-212ENST00000478288 LRRC4BQ9NT99 713 aa18.17■□□□□ 0.5
ABCF3-212ENST00000478288 ATF5Q9Y2D1 282 aaPredicted RBP18.17■□□□□ 0.5
ABCF3-212ENST00000478288 TUBGCP6Q96RT7 1819 aa18.16■□□□□ 0.5
ABCF3-212ENST00000478288 TIMELESSQ9UNS1 1208 aa18.16■□□□□ 0.5
ABCF3-212ENST00000478288 NSD2O96028 1365 aa18.16■□□□□ 0.5
ABCF3-212ENST00000478288 CHD4Q14839 1912 aa18.15■□□□□ 0.5
ABCF3-212ENST00000478288 ZNF827Q17R98 1081 aa18.15■□□□□ 0.5
ABCF3-212ENST00000478288 ZCRB1Q8TBF4 217 aaKnown RBP18.15■□□□□ 0.5
ABCF3-212ENST00000478288 AKT1S1Q96B36 256 aa18.15■□□□□ 0.5
ABCF3-212ENST00000478288 INSRP06213 1382 aa18.15■□□□□ 0.5
ABCF3-212ENST00000478288 FLT4P35916 1363 aa18.15■□□□□ 0.5
ABCF3-212ENST00000478288 FBLN1P23142 703 aa18.14■□□□□ 0.49
ABCF3-212ENST00000478288 RRS1Q15050 365 aaKnown RBP18.14■□□□□ 0.49
ABCF3-212ENST00000478288 SLC16A10Q8TF71 515 aa18.14■□□□□ 0.49
ABCF3-212ENST00000478288 SYT17Q9BSW7 474 aa18.14■□□□□ 0.49
ABCF3-212ENST00000478288 FHDC1Q9C0D6 1143 aaPredicted RBP18.14■□□□□ 0.49
ABCF3-212ENST00000478288 GGNBP2Q9H3C7 697 aa18.14■□□□□ 0.49
ABCF3-212ENST00000478288 ANKRD26Q9UPS8 1709 aa18.14■□□□□ 0.49
ABCF3-212ENST00000478288 NBPF6Q5VWK0 638 aa18.13■□□□□ 0.49
ABCF3-212ENST00000478288 NBPF4Q96M43 638 aa18.13■□□□□ 0.49
ABCF3-212ENST00000478288 PRIM1P49642 420 aaKnown RBP18.12■□□□□ 0.49
ABCF3-212ENST00000478288 CLSPNQ9HAW4 1339 aa18.12■□□□□ 0.49
ABCF3-212ENST00000478288 RAPGEF4Q8WZA2 1011 aa18.11■□□□□ 0.49
ABCF3-212ENST00000478288 ARXQ96QS3 562 aa18.11■□□□□ 0.49
ABCF3-212ENST00000478288 PKD1L3Q7Z443 1732 aa18.1■□□□□ 0.49
ABCF3-212ENST00000478288 NCAPD2Q15021 1401 aa18.1■□□□□ 0.49
ABCF3-212ENST00000478288 SYTL4Q96C24 671 aaPredicted RBP18.1■□□□□ 0.49
ABCF3-212ENST00000478288 NSD3Q9BZ95 1437 aa18.09■□□□□ 0.49
ABCF3-212ENST00000478288 PNPLA7Q6ZV29 1317 aa18.09■□□□□ 0.49
ABCF3-212ENST00000478288 PCDH11XQ9BZA7 1347 aa18.08■□□□□ 0.49
ABCF3-212ENST00000478288 PCDH11YQ9BZA8 1340 aa18.08■□□□□ 0.49
ABCF3-212ENST00000478288 TATP17735 454 aaPredicted RBP18.08■□□□□ 0.48
ABCF3-212ENST00000478288 HMGB2P26583 209 aaKnown RBP18.08■□□□□ 0.48
ABCF3-212ENST00000478288 HSP90AB2PQ58FF8 381 aa18.08■□□□□ 0.48
ABCF3-212ENST00000478288 C5P01031 1676 aa18.07■□□□□ 0.48
ABCF3-212ENST00000478288 CARD14Q9BXL6 1004 aa18.07■□□□□ 0.48
ABCF3-212ENST00000478288 MAP2P11137 1827 aaKnown RBP18.07■□□□□ 0.48
ABCF3-212ENST00000478288 TAF1LQ8IZX4 1826 aa18.07■□□□□ 0.48
ABCF3-212ENST00000478288 TFCP2L1Q9NZI6 479 aa18.06■□□□□ 0.48
ABCF3-212ENST00000478288 CCNL1Q9UK58 526 aaPredicted RBP18.06■□□□□ 0.48
ABCF3-212ENST00000478288 ITGB4P16144 1822 aa18.06■□□□□ 0.48
ABCF3-212ENST00000478288 POLD1P28340 1107 aa18.05■□□□□ 0.48
ABCF3-212ENST00000478288 USHBP1Q8N6Y0 703 aa18.05■□□□□ 0.48
ABCF3-212ENST00000478288 TOGARAM1Q9Y4F4 1720 aa18.05■□□□□ 0.48
ABCF3-212ENST00000478288 PLEKHG2Q9H7P9 1386 aa18.03■□□□□ 0.48
ABCF3-212ENST00000478288 WASHC2AQ641Q2 1341 aa18.01■□□□□ 0.47
ABCF3-212ENST00000478288 CYP27B1O15528 508 aa18.01■□□□□ 0.47
ABCF3-212ENST00000478288 KCNQ4P56696 695 aa18.01■□□□□ 0.47
ABCF3-212ENST00000478288 EMILIN1Q9Y6C2 1016 aa18.01■□□□□ 0.47
ABCF3-212ENST00000478288 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18■□□□□ 0.47
ABCF3-212ENST00000478288 PALLDQ8WX93 1383 aa18■□□□□ 0.47
ABCF3-212ENST00000478288 NKX1-1Q15270 411 aaPredicted RBP17.99■□□□□ 0.47
ABCF3-212ENST00000478288 C4BP0C0L5 1744 aa17.98■□□□□ 0.47
ABCF3-212ENST00000478288 ZNF784Q8NCA9 323 aaPredicted RBP17.98■□□□□ 0.47
ABCF3-212ENST00000478288 FLAD1Q8NFF5 587 aa17.98■□□□□ 0.47
ABCF3-212ENST00000478288 SMARCC1Q92922 1105 aaPredicted RBP17.98■□□□□ 0.47
ABCF3-212ENST00000478288 UBR3Q6ZT12 1888 aa17.97■□□□□ 0.47
ABCF3-212ENST00000478288 COL23A1Q86Y22 540 aaPredicted RBP17.97■□□□□ 0.47
ABCF3-212ENST00000478288 MPRIPQ6WCQ1 1025 aa17.96■□□□□ 0.47
ABCF3-212ENST00000478288 SPG7Q9UQ90 795 aa17.96■□□□□ 0.47
ABCF3-212ENST00000478288 POLKQ9UBT6 870 aa17.95■□□□□ 0.46
ABCF3-212ENST00000478288 PPM1GO15355 546 aaPredicted RBP17.94■□□□□ 0.46
ABCF3-212ENST00000478288 GPR162Q16538 588 aa17.94■□□□□ 0.46
ABCF3-212ENST00000478288 EYA1Q99502 592 aa17.94■□□□□ 0.46
ABCF3-212ENST00000478288 PIGBQ92521 554 aa17.92■□□□□ 0.46
ABCF3-212ENST00000478288 ZNF831Q5JPB2 1677 aa17.91■□□□□ 0.46
ABCF3-212ENST00000478288 MSH5O43196 834 aa17.91■□□□□ 0.46
ABCF3-212ENST00000478288 EIF4G2P78344 907 aaKnown RBP eCLIP17.91■□□□□ 0.46
ABCF3-212ENST00000478288 KLHL34Q8N239 644 aa17.91■□□□□ 0.46
ABCF3-212ENST00000478288 NLGN2Q8NFZ4 835 aa17.91■□□□□ 0.46
ABCF3-212ENST00000478288 IFNL2Q8IZJ0 200 aa17.9■□□□□ 0.46
ABCF3-212ENST00000478288 CD2APQ9Y5K6 639 aa17.9■□□□□ 0.46
ABCF3-212ENST00000478288 GRIN3BO60391 1043 aa17.89■□□□□ 0.45
ABCF3-212ENST00000478288 PHKG2P15735 406 aa17.89■□□□□ 0.45
ABCF3-212ENST00000478288 EIF4A2Q14240 407 aaKnown RBP17.89■□□□□ 0.45
ABCF3-212ENST00000478288 AK7Q96M32 723 aa17.89■□□□□ 0.45
ABCF3-212ENST00000478288 TMOD3Q9NYL9 352 aa17.89■□□□□ 0.45
ABCF3-212ENST00000478288 IGSF1Q8N6C5 1336 aa17.89■□□□□ 0.45
ABCF3-212ENST00000478288 LOC102724428A0A0B4J2F2 783 aa17.88■□□□□ 0.45
ABCF3-212ENST00000478288 SSFA2P28290 1259 aa17.88■□□□□ 0.45
ABCF3-212ENST00000478288 SIK1P57059 783 aa17.88■□□□□ 0.45
ABCF3-212ENST00000478288 PCGF6Q9BYE7 350 aa17.88■□□□□ 0.45
ABCF3-212ENST00000478288 MSL1Q68DK7 614 aa17.87■□□□□ 0.45
ABCF3-212ENST00000478288 HSPA5P11021 654 aaKnown RBP17.86■□□□□ 0.45
ABCF3-212ENST00000478288 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.85■□□□□ 0.45
ABCF3-212ENST00000478288 CEP350Q5VT06 3117 aa17.84■□□□□ 0.45
ABCF3-212ENST00000478288 KDRP35968 1356 aa17.84■□□□□ 0.45
ABCF3-212ENST00000478288 HSP90AB1P08238 724 aaKnown RBP17.84■□□□□ 0.45
ABCF3-212ENST00000478288 YBX3P16989 372 aaKnown RBP eCLIP17.84■□□□□ 0.45
ABCF3-212ENST00000478288 AMIGO3Q86WK7 504 aa17.84■□□□□ 0.45
ABCF3-212ENST00000478288 PELP1Q8IZL8 1130 aaKnown RBP17.84■□□□□ 0.45
ABCF3-212ENST00000478288 LINC00116Q8NCU8 138 aa17.84■□□□□ 0.45
ABCF3-212ENST00000478288 POLR3GLQ9BT43 218 aa17.84■□□□□ 0.45
ABCF3-212ENST00000478288 PANK3Q9H999 370 aa17.84■□□□□ 0.45
ABCF3-212ENST00000478288 ASAP1Q9ULH1 1129 aa17.84■□□□□ 0.45
ABCF3-212ENST00000478288 COL5A3P25940 1745 aaPredicted RBP17.84■□□□□ 0.45
ABCF3-212ENST00000478288 ERVV-2B6SEH9 535 aa17.83■□□□□ 0.44
ABCF3-212ENST00000478288 TNNT2P45379 298 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms