RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 NUP188Q5SRE5 1749 aa31.04■■■□□ 2.56
TRAF4-211ENST00000478021 KCNQ2O43526 872 aa31.03■■■□□ 2.56
TRAF4-211ENST00000478021 TATP17735 454 aaPredicted RBP31.03■■■□□ 2.56
TRAF4-211ENST00000478021 CC2D1BQ5T0F9 858 aaKnown RBP31.03■■■□□ 2.56
TRAF4-211ENST00000478021 PARD3Q8TEW0 1356 aa31.03■■■□□ 2.56
TRAF4-211ENST00000478021 CNGB1Q14028 1251 aaPredicted RBP31.02■■■□□ 2.56
TRAF4-211ENST00000478021 EIF4A2Q14240 407 aaKnown RBP31.02■■■□□ 2.56
TRAF4-211ENST00000478021 EYA1Q99502 592 aa31.01■■■□□ 2.55
TRAF4-211ENST00000478021 RGPD3A6NKT7 1758 aaPredicted RBP31.01■■■□□ 2.55
TRAF4-211ENST00000478021 RGPD4Q7Z3J3 1758 aa31.01■■■□□ 2.55
TRAF4-211ENST00000478021 NCAPD2Q15021 1401 aa31■■■□□ 2.55
TRAF4-211ENST00000478021 DOT1LQ8TEK3 1739 aa30.99■■■□□ 2.55
TRAF4-211ENST00000478021 PSDA5PKW4 1024 aaPredicted RBP30.99■■■□□ 2.55
TRAF4-211ENST00000478021 BTAF1O14981 1849 aa30.98■■■□□ 2.55
TRAF4-211ENST00000478021 SRCAPQ6ZRS2 3230 aa30.96■■■□□ 2.55
TRAF4-211ENST00000478021 PKD1L3Q7Z443 1732 aa30.95■■■□□ 2.55
TRAF4-211ENST00000478021 PLSCR1O15162 318 aa30.95■■■□□ 2.55
TRAF4-211ENST00000478021 R3HDM1Q15032 1099 aaKnown RBP30.92■■■□□ 2.54
TRAF4-211ENST00000478021 PCDH11XQ9BZA7 1347 aa30.91■■■□□ 2.54
TRAF4-211ENST00000478021 PCDH11YQ9BZA8 1340 aa30.91■■■□□ 2.54
TRAF4-211ENST00000478021 NPC1L1Q9UHC9 1359 aa30.91■■■□□ 2.54
TRAF4-211ENST00000478021 IGSF1Q8N6C5 1336 aa30.9■■■□□ 2.54
TRAF4-211ENST00000478021 MTHFSP49914 203 aa30.89■■■□□ 2.54
TRAF4-211ENST00000478021 SYTL4Q96C24 671 aaPredicted RBP30.89■■■□□ 2.54
TRAF4-211ENST00000478021 PRIM1P49642 420 aaKnown RBP30.87■■■□□ 2.53
TRAF4-211ENST00000478021 PROM2Q8N271 834 aa30.87■■■□□ 2.53
TRAF4-211ENST00000478021 CYP27B1O15528 508 aa30.86■■■□□ 2.53
TRAF4-211ENST00000478021 TXNRD1Q16881 649 aa30.85■■■□□ 2.53
TRAF4-211ENST00000478021 NBPF14Q5TI25 921 aa30.85■■■□□ 2.53
TRAF4-211ENST00000478021 SPG7Q9UQ90 795 aa30.84■■■□□ 2.53
TRAF4-211ENST00000478021 IL13P35225 146 aa30.83■■■□□ 2.53
TRAF4-211ENST00000478021 TOGARAM1Q9Y4F4 1720 aa30.83■■■□□ 2.53
TRAF4-211ENST00000478021 AEBP1Q8IUX7 1158 aa30.82■■■□□ 2.52
TRAF4-211ENST00000478021 ANO8Q9HCE9 1232 aaPredicted RBP30.81■■■□□ 2.52
TRAF4-211ENST00000478021 ITGB4P16144 1822 aa30.79■■■□□ 2.52
TRAF4-211ENST00000478021 SULT6B1Q6IMI4 303 aa30.78■■■□□ 2.52
TRAF4-211ENST00000478021 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.78■■■□□ 2.52
TRAF4-211ENST00000478021 PHKG2P15735 406 aa30.74■■■□□ 2.51
TRAF4-211ENST00000478021 COL3A1P02461 1466 aaPredicted RBP30.74■■■□□ 2.51
TRAF4-211ENST00000478021 LY75O60449 1722 aa30.73■■■□□ 2.51
TRAF4-211ENST00000478021 DIAPH1O60610 1272 aaKnown RBP30.73■■■□□ 2.51
TRAF4-211ENST00000478021 IFNL2Q8IZJ0 200 aa30.73■■■□□ 2.51
TRAF4-211ENST00000478021 PAPPAQ13219 1627 aa30.73■■■□□ 2.51
TRAF4-211ENST00000478021 KDRP35968 1356 aa30.72■■■□□ 2.51
TRAF4-211ENST00000478021 PLEKHG2Q9H7P9 1386 aa30.72■■■□□ 2.51
TRAF4-211ENST00000478021 NKX1-1Q15270 411 aaPredicted RBP30.72■■■□□ 2.51
TRAF4-211ENST00000478021 MPRIPQ6WCQ1 1025 aa30.72■■■□□ 2.51
TRAF4-211ENST00000478021 LRP5O75197 1615 aa30.72■■■□□ 2.51
TRAF4-211ENST00000478021 PLEKHO1Q53GL0 409 aaPredicted RBP30.71■■■□□ 2.51
TRAF4-211ENST00000478021 LRRC4BQ9NT99 713 aa30.71■■■□□ 2.51
TRAF4-211ENST00000478021 HMOX1P09601 288 aa30.7■■■□□ 2.51
TRAF4-211ENST00000478021 KCNQ4P56696 695 aa30.7■■■□□ 2.51
TRAF4-211ENST00000478021 STK32BQ9NY57 414 aa30.7■■■□□ 2.51
TRAF4-211ENST00000478021 ZNF530Q6P9A1 599 aaPredicted RBP30.69■■■□□ 2.5
TRAF4-211ENST00000478021 PPP2R1AP30153 589 aa30.66■■■□□ 2.5
TRAF4-211ENST00000478021 SLC15A2Q16348 729 aa30.66■■■□□ 2.5
TRAF4-211ENST00000478021 AMOTQ4VCS5 1084 aa30.66■■■□□ 2.5
TRAF4-211ENST00000478021 CASZ1Q86V15 1759 aa30.65■■■□□ 2.5
TRAF4-211ENST00000478021 ZEB1P37275 1124 aaPredicted RBP30.65■■■□□ 2.5
TRAF4-211ENST00000478021 SLC27A3Q5K4L6 730 aa30.65■■■□□ 2.5
TRAF4-211ENST00000478021 PIGBQ92521 554 aa30.65■■■□□ 2.5
TRAF4-211ENST00000478021 U2SURPO15042 1029 aaKnown RBP30.64■■■□□ 2.5
TRAF4-211ENST00000478021 DDX10Q13206 875 aaKnown RBP30.63■■■□□ 2.49
TRAF4-211ENST00000478021 ZNF827Q17R98 1081 aa30.63■■■□□ 2.49
TRAF4-211ENST00000478021 PDGFDQ9GZP0 370 aaPredicted RBP30.63■■■□□ 2.49
TRAF4-211ENST00000478021 CCNL1Q9UK58 526 aaPredicted RBP30.63■■■□□ 2.49
TRAF4-211ENST00000478021 PALLDQ8WX93 1383 aa30.63■■■□□ 2.49
TRAF4-211ENST00000478021 CFAP53Q96M91 514 aa30.62■■■□□ 2.49
TRAF4-211ENST00000478021 TMOD3Q9NYL9 352 aa30.62■■■□□ 2.49
TRAF4-211ENST00000478021 C1orf141Q5JVX7 400 aa30.61■■■□□ 2.49
TRAF4-211ENST00000478021 KDM6AO15550 1401 aaPredicted RBP30.61■■■□□ 2.49
TRAF4-211ENST00000478021 HSP90AB1P08238 724 aaKnown RBP30.59■■■□□ 2.49
TRAF4-211ENST00000478021 DCAF5Q96JK2 942 aa30.58■■■□□ 2.49
TRAF4-211ENST00000478021 TUBGCP6Q96RT7 1819 aa30.58■■■□□ 2.49
TRAF4-211ENST00000478021 C5P01031 1676 aa30.57■■■□□ 2.48
TRAF4-211ENST00000478021 SMARCC1Q92922 1105 aaPredicted RBP30.56■■■□□ 2.48
TRAF4-211ENST00000478021 AKT1S1Q96B36 256 aa30.56■■■□□ 2.48
TRAF4-211ENST00000478021 TAF1LQ8IZX4 1826 aa30.56■■■□□ 2.48
TRAF4-211ENST00000478021 VIRMAQ69YN4 1812 aaKnown RBP30.54■■■□□ 2.48
TRAF4-211ENST00000478021 SCN11AQ9UI33 1791 aa30.54■■■□□ 2.48
TRAF4-211ENST00000478021 ASAP1Q9ULH1 1129 aa30.54■■■□□ 2.48
TRAF4-211ENST00000478021 ERVV-2B6SEH9 535 aa30.53■■■□□ 2.48
TRAF4-211ENST00000478021 ZBTB7AO95365 584 aa30.53■■■□□ 2.48
TRAF4-211ENST00000478021 QSER1Q2KHR3 1735 aa30.53■■■□□ 2.48
TRAF4-211ENST00000478021 MTHFSDQ2M296 383 aaKnown RBP30.52■■■□□ 2.48
TRAF4-211ENST00000478021 AKAP4Q5JQC9 854 aa30.52■■■□□ 2.48
TRAF4-211ENST00000478021 SPON1Q9HCB6 807 aa30.52■■■□□ 2.48
TRAF4-211ENST00000478021 CABP4P57796 275 aa30.51■■■□□ 2.47
TRAF4-211ENST00000478021 ATG3Q9NT62 314 aa30.5■■■□□ 2.47
TRAF4-211ENST00000478021 NUDCQ9Y266 331 aa30.5■■■□□ 2.47
TRAF4-211ENST00000478021 TFCP2L1Q9NZI6 479 aa30.49■■■□□ 2.47
TRAF4-211ENST00000478021 LOC102724428A0A0B4J2F2 783 aa30.47■■■□□ 2.47
TRAF4-211ENST00000478021 SIK1P57059 783 aa30.47■■■□□ 2.47
TRAF4-211ENST00000478021 ATF5Q9Y2D1 282 aaPredicted RBP30.47■■■□□ 2.47
TRAF4-211ENST00000478021 C4BP0C0L5 1744 aa30.47■■■□□ 2.47
TRAF4-211ENST00000478021 PNPLA7Q6ZV29 1317 aa30.47■■■□□ 2.47
TRAF4-211ENST00000478021 U2AF1L5P0DN76 240 aaPredicted RBP30.46■■■□□ 2.47
TRAF4-211ENST00000478021 U2AF1Q01081 240 aaKnown RBP eCLIP30.46■■■□□ 2.47
TRAF4-211ENST00000478021 LGR6Q9HBX8 967 aa30.46■■■□□ 2.47
TRAF4-211ENST00000478021 PRKAR2BP31323 418 aa30.45■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms