RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 IL17REQ8NFR9 667 aa18.75■□□□□ 0.59
COL4A6-206ENST00000477085 GNAT3A8MTJ3 354 aa18.74■□□□□ 0.59
COL4A6-206ENST00000477085 FAM208AQ9UK61 1670 aaKnown RBP18.74■□□□□ 0.59
COL4A6-206ENST00000477085 CHL1O00533 1208 aa18.73■□□□□ 0.59
COL4A6-206ENST00000477085 HTATSF1O43719 755 aaKnown RBP18.73■□□□□ 0.59
COL4A6-206ENST00000477085 COL16A1Q07092 1604 aaPredicted RBP18.73■□□□□ 0.59
COL4A6-206ENST00000477085 UBAP1LF5GYI3 381 aa18.73■□□□□ 0.59
COL4A6-206ENST00000477085 CSB-PGBD3P0DP91 1061 aa18.73■□□□□ 0.59
COL4A6-206ENST00000477085 MAP3K5Q99683 1374 aa18.72■□□□□ 0.59
COL4A6-206ENST00000477085 TSPYL6Q8N831 410 aa18.72■□□□□ 0.59
COL4A6-206ENST00000477085 RTF1Q92541 710 aaKnown RBP18.72■□□□□ 0.59
COL4A6-206ENST00000477085 COL22A1Q8NFW1 1626 aaPredicted RBP18.72■□□□□ 0.59
COL4A6-206ENST00000477085 COL5A2P05997 1499 aaPredicted RBP18.71■□□□□ 0.59
COL4A6-206ENST00000477085 BCL2L13Q9BXK5 485 aa18.71■□□□□ 0.59
COL4A6-206ENST00000477085 MIS18AQ9NYP9 233 aa18.71■□□□□ 0.59
COL4A6-206ENST00000477085 CT47B1P0C2W7 299 aaPredicted RBP18.7■□□□□ 0.58
COL4A6-206ENST00000477085 PLEKHO1Q53GL0 409 aaPredicted RBP18.7■□□□□ 0.58
COL4A6-206ENST00000477085 EXOC6Q8TAG9 804 aa18.7■□□□□ 0.58
COL4A6-206ENST00000477085 PHLPP1O60346 1717 aa18.7■□□□□ 0.58
COL4A6-206ENST00000477085 C8orf58Q8NAV2 365 aa18.7■□□□□ 0.58
COL4A6-206ENST00000477085 LGR6Q9HBX8 967 aa18.7■□□□□ 0.58
COL4A6-206ENST00000477085 WDR17Q8IZU2 1322 aa18.7■□□□□ 0.58
COL4A6-206ENST00000477085 MEGF6O75095 1541 aa18.7■□□□□ 0.58
COL4A6-206ENST00000477085 VAMP4O75379 141 aa18.69■□□□□ 0.58
COL4A6-206ENST00000477085 AMOTQ4VCS5 1084 aa18.69■□□□□ 0.58
COL4A6-206ENST00000477085 ZNF530Q6P9A1 599 aaPredicted RBP18.68■□□□□ 0.58
COL4A6-206ENST00000477085 SSH1Q8WYL5 1049 aa18.68■□□□□ 0.58
COL4A6-206ENST00000477085 LRRC37A3O60309 1634 aa18.68■□□□□ 0.58
COL4A6-206ENST00000477085 KRT24Q2M2I5 525 aa18.68■□□□□ 0.58
COL4A6-206ENST00000477085 AKAP4Q5JQC9 854 aa18.68■□□□□ 0.58
COL4A6-206ENST00000477085 CERKQ8TCT0 537 aa18.68■□□□□ 0.58
COL4A6-206ENST00000477085 CRBNQ96SW2 442 aa18.68■□□□□ 0.58
COL4A6-206ENST00000477085 PPP4R2Q9NY27 417 aa18.68■□□□□ 0.58
COL4A6-206ENST00000477085 CEMIPQ8WUJ3 1361 aa18.67■□□□□ 0.58
COL4A6-206ENST00000477085 ELL2O00472 640 aaPredicted RBP18.67■□□□□ 0.58
COL4A6-206ENST00000477085 LARP1Q6PKG0 1096 aaKnown RBP18.67■□□□□ 0.58
COL4A6-206ENST00000477085 RAPGEF4Q8WZA2 1011 aa18.66■□□□□ 0.58
COL4A6-206ENST00000477085 MPRIPQ6WCQ1 1025 aa18.65■□□□□ 0.58
COL4A6-206ENST00000477085 TOM1L2Q6ZVM7 507 aa18.65■□□□□ 0.58
COL4A6-206ENST00000477085 STRN4Q9NRL3 753 aa18.65■□□□□ 0.58
COL4A6-206ENST00000477085 TNNQ9UQP3 1299 aa18.65■□□□□ 0.58
COL4A6-206ENST00000477085 TATP17735 454 aaPredicted RBP18.65■□□□□ 0.58
COL4A6-206ENST00000477085 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.65■□□□□ 0.58
COL4A6-206ENST00000477085 BTG4Q9NY30 223 aa18.65■□□□□ 0.58
COL4A6-206ENST00000477085 TWISTNBQ3B726 338 aaPredicted RBP18.64■□□□□ 0.57
COL4A6-206ENST00000477085 FRAT1Q92837 279 aaPredicted RBP18.64■□□□□ 0.57
COL4A6-206ENST00000477085 EVA1CP58658 441 aa18.63■□□□□ 0.57
COL4A6-206ENST00000477085 B4GALNT3Q6L9W6 998 aa18.63■□□□□ 0.57
COL4A6-206ENST00000477085 CARD10Q9BWT7 1032 aa18.63■□□□□ 0.57
COL4A6-206ENST00000477085 TSPYL4Q9UJ04 414 aa18.63■□□□□ 0.57
COL4A6-206ENST00000477085 TAF7Q15545 349 aaPredicted RBP18.63■□□□□ 0.57
COL4A6-206ENST00000477085 SMC4Q9NTJ3 1288 aa18.63■□□□□ 0.57
COL4A6-206ENST00000477085 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.63■□□□□ 0.57
COL4A6-206ENST00000477085 RNMTO43148 476 aaKnown RBP18.62■□□□□ 0.57
COL4A6-206ENST00000477085 C1orf141Q5JVX7 400 aa18.62■□□□□ 0.57
COL4A6-206ENST00000477085 ALDH1L2Q3SY69 923 aa18.61■□□□□ 0.57
COL4A6-206ENST00000477085 COL14A1Q05707 1796 aaKnown RBP18.61■□□□□ 0.57
COL4A6-206ENST00000477085 TCERG1O14776 1098 aaKnown RBP18.6■□□□□ 0.57
COL4A6-206ENST00000477085 CYP27B1O15528 508 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 ADAMTS2O95450 1211 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 RLBP1P12271 317 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 PHKG2P15735 406 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 PDE3AQ14432 1141 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 PANK1Q8TE04 598 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 OVOS2A0A0G2JMS6 1433 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 MRPL50Q8N5N7 158 aaKnown RBP18.6■□□□□ 0.57
COL4A6-206ENST00000477085 ZNF428Q96B54 188 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 NOB1Q9ULX3 412 aaKnown RBP18.6■□□□□ 0.57
COL4A6-206ENST00000477085 SPG7Q9UQ90 795 aa18.6■□□□□ 0.57
COL4A6-206ENST00000477085 PLEKHG2Q9H7P9 1386 aa18.59■□□□□ 0.57
COL4A6-206ENST00000477085 ADAMTS7Q9UKP4 1686 aa18.58■□□□□ 0.57
COL4A6-206ENST00000477085 NUTM2BA6NNL0 878 aaPredicted RBP18.58■□□□□ 0.57
COL4A6-206ENST00000477085 NUTM2EB1AL46 878 aaPredicted RBP18.58■□□□□ 0.57
COL4A6-206ENST00000477085 BRPF1P55201 1214 aaPredicted RBP18.58■□□□□ 0.57
COL4A6-206ENST00000477085 NUTM2AQ8IVF1 878 aaPredicted RBP18.58■□□□□ 0.57
COL4A6-206ENST00000477085 BABAM1Q9NWV8 329 aa18.58■□□□□ 0.57
COL4A6-206ENST00000477085 KDM6AO15550 1401 aaPredicted RBP18.58■□□□□ 0.56
COL4A6-206ENST00000477085 PKD1L3Q7Z443 1732 aa18.58■□□□□ 0.56
COL4A6-206ENST00000477085 CANXP27824 592 aaKnown RBP18.58■□□□□ 0.56
COL4A6-206ENST00000477085 KCNQ3O43525 872 aa18.57■□□□□ 0.56
COL4A6-206ENST00000477085 USP35Q9P2H5 1018 aa18.57■□□□□ 0.56
COL4A6-206ENST00000477085 TRIM27P14373 513 aa18.56■□□□□ 0.56
COL4A6-206ENST00000477085 IL2RBP14784 551 aa18.56■□□□□ 0.56
COL4A6-206ENST00000477085 ZKSCAN2Q63HK3 967 aa18.56■□□□□ 0.56
COL4A6-206ENST00000477085 IFNL2Q8IZJ0 200 aa18.56■□□□□ 0.56
COL4A6-206ENST00000477085 CLUAP1Q96AJ1 413 aa18.56■□□□□ 0.56
COL4A6-206ENST00000477085 COG6Q9Y2V7 657 aa18.55■□□□□ 0.56
COL4A6-206ENST00000477085 TEFQ10587 303 aa18.55■□□□□ 0.56
COL4A6-206ENST00000477085 ATF7IPQ6VMQ6 1270 aa18.54■□□□□ 0.56
COL4A6-206ENST00000477085 ZCRB1Q8TBF4 217 aaKnown RBP18.54■□□□□ 0.56
COL4A6-206ENST00000477085 BTBD11A6QL63 1104 aa18.53■□□□□ 0.56
COL4A6-206ENST00000477085 EIF4A1P60842 406 aaKnown RBP18.53■□□□□ 0.56
COL4A6-206ENST00000477085 CCDC136Q96JN2 1154 aa18.53■□□□□ 0.56
COL4A6-206ENST00000477085 PARP4Q9UKK3 1724 aaKnown RBP18.52■□□□□ 0.56
COL4A6-206ENST00000477085 JCADQ9P266 1359 aa18.52■□□□□ 0.56
COL4A6-206ENST00000477085 VIRMAQ69YN4 1812 aaKnown RBP18.52■□□□□ 0.56
COL4A6-206ENST00000477085 PLCH1Q4KWH8 1693 aa18.52■□□□□ 0.56
COL4A6-206ENST00000477085 DZIP1LQ8IYY4 767 aaKnown RBP18.52■□□□□ 0.55
COL4A6-206ENST00000477085 KIF16BQ96L93 1317 aa18.52■□□□□ 0.55
COL4A6-206ENST00000477085 SIPA1L3O60292 1781 aaPredicted RBP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms