RNA–Protein interactions for RNA: ENST00000475944.1

CDRT1-205, CMT1A duplicated region transcript 1, humanhuman

TSL 3

Gene CDRT1, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-205ENST00000475944 MEGF6O75095 1541 aa15.17■□□□□ 0.02
CDRT1-205ENST00000475944 RGPD2P0DJD1 1756 aa15.16■□□□□ 0.02
CDRT1-205ENST00000475944 USP47Q96K76 1375 aa15.16■□□□□ 0.02
CDRT1-205ENST00000475944 RRS1Q15050 365 aaKnown RBP15.16■□□□□ 0.02
CDRT1-205ENST00000475944 SHANK3Q9BYB0 1731 aa15.16■□□□□ 0.02
CDRT1-205ENST00000475944 CGNL1Q0VF96 1302 aa15.16■□□□□ 0.02
CDRT1-205ENST00000475944 FYB1O15117 783 aa15.15■□□□□ 0.02
CDRT1-205ENST00000475944 POLD1P28340 1107 aa15.15■□□□□ 0.02
CDRT1-205ENST00000475944 CDCA8Q53HL2 280 aa15.15■□□□□ 0.02
CDRT1-205ENST00000475944 GGNBP2Q9H3C7 697 aa15.15■□□□□ 0.02
CDRT1-205ENST00000475944 TFCP2L1Q9NZI6 479 aa15.15■□□□□ 0.02
CDRT1-205ENST00000475944 LY75O60449 1722 aa15.14■□□□□ 0.01
CDRT1-205ENST00000475944 NSD2O96028 1365 aa15.14■□□□□ 0.01
CDRT1-205ENST00000475944 RAPGEF4Q8WZA2 1011 aa15.14■□□□□ 0.01
CDRT1-205ENST00000475944 PNPLA7Q6ZV29 1317 aa15.14■□□□□ 0.01
CDRT1-205ENST00000475944 NBPF6Q5VWK0 638 aa15.13■□□□□ 0.01
CDRT1-205ENST00000475944 ZNF784Q8NCA9 323 aaPredicted RBP15.13■□□□□ 0.01
CDRT1-205ENST00000475944 NBPF4Q96M43 638 aa15.13■□□□□ 0.01
CDRT1-205ENST00000475944 KIF20BQ96Q89 1820 aa15.13■□□□□ 0.01
CDRT1-205ENST00000475944 INSRP06213 1382 aa15.12■□□□□ 0.01
CDRT1-205ENST00000475944 KIF24Q5T7B8 1368 aa15.12■□□□□ 0.01
CDRT1-205ENST00000475944 TATP17735 454 aaPredicted RBP15.12■□□□□ 0.01
CDRT1-205ENST00000475944 KCNQ4P56696 695 aa15.12■□□□□ 0.01
CDRT1-205ENST00000475944 CCNL1Q9UK58 526 aaPredicted RBP15.12■□□□□ 0.01
CDRT1-205ENST00000475944 TUBGCP6Q96RT7 1819 aa15.12■□□□□ 0.01
CDRT1-205ENST00000475944 COL24A1Q17RW2 1714 aa15.12■□□□□ 0.01
CDRT1-205ENST00000475944 FLT4P35916 1363 aa15.11■□□□□ 0.01
CDRT1-205ENST00000475944 KLHL34Q8N239 644 aa15.11■□□□□ 0.01
CDRT1-205ENST00000475944 USHBP1Q8N6Y0 703 aa15.11■□□□□ 0.01
CDRT1-205ENST00000475944 CHD4Q14839 1912 aa15.11■□□□□ 0.01
CDRT1-205ENST00000475944 HMGB2P26583 209 aaKnown RBP15.1■□□□□ 0.01
CDRT1-205ENST00000475944 GPR162Q16538 588 aa15.1■□□□□ 0.01
CDRT1-205ENST00000475944 PCDH11XQ9BZA7 1347 aa15.1■□□□□ 0.01
CDRT1-205ENST00000475944 PCDH11YQ9BZA8 1340 aa15.1■□□□□ 0.01
CDRT1-205ENST00000475944 TRIM26Q12899 539 aaPredicted RBP15.09■□□□□ 0.01
CDRT1-205ENST00000475944 HSP90AB2PQ58FF8 381 aa15.09■□□□□ 0.01
CDRT1-205ENST00000475944 MSH5O43196 834 aa15.07■□□□□ 0
CDRT1-205ENST00000475944 NSD3Q9BZ95 1437 aa15.07■□□□□ 0
CDRT1-205ENST00000475944 PELP1Q8IZL8 1130 aaKnown RBP15.06■□□□□ 0
CDRT1-205ENST00000475944 C5P01031 1676 aa15.06■□□□□ 0
CDRT1-205ENST00000475944 COL23A1Q86Y22 540 aaPredicted RBP15.05■□□□□ -0
CDRT1-205ENST00000475944 PALLDQ8WX93 1383 aa15.05■□□□□ -0
CDRT1-205ENST00000475944 MPRIPQ6WCQ1 1025 aa15.04■□□□□ -0
CDRT1-205ENST00000475944 FLAD1Q8NFF5 587 aa15.04■□□□□ -0
CDRT1-205ENST00000475944 CARD14Q9BXL6 1004 aa15.04■□□□□ -0
CDRT1-205ENST00000475944 EMILIN1Q9Y6C2 1016 aa15.04■□□□□ -0
CDRT1-205ENST00000475944 PKD1L3Q7Z443 1732 aa15.03■□□□□ -0
CDRT1-205ENST00000475944 UTRNP46939 3433 aa15.03■□□□□ -0
CDRT1-205ENST00000475944 CYP27B1O15528 508 aa15.03■□□□□ -0
CDRT1-205ENST00000475944 NLGN2Q8NFZ4 835 aa15.03■□□□□ -0
CDRT1-205ENST00000475944 SMARCC1Q92922 1105 aaPredicted RBP15.03■□□□□ -0
CDRT1-205ENST00000475944 NCAPD2Q15021 1401 aa15.02■□□□□ -0
CDRT1-205ENST00000475944 PPM1GO15355 546 aaPredicted RBP15.02■□□□□ -0
CDRT1-205ENST00000475944 TIMELESSQ9UNS1 1208 aa15.02■□□□□ -0
CDRT1-205ENST00000475944 ANKRD26Q9UPS8 1709 aa15.02□□□□□ -0.01
CDRT1-205ENST00000475944 TOGARAM1Q9Y4F4 1720 aa15.02□□□□□ -0.01
CDRT1-205ENST00000475944 TAF1LQ8IZX4 1826 aa15.01□□□□□ -0.01
CDRT1-205ENST00000475944 MSL1Q68DK7 614 aa15.01□□□□□ -0.01
CDRT1-205ENST00000475944 SPG7Q9UQ90 795 aa15.01□□□□□ -0.01
CDRT1-205ENST00000475944 WASHC2AQ641Q2 1341 aa15□□□□□ -0.01
CDRT1-205ENST00000475944 GRIN3BO60391 1043 aa15□□□□□ -0.01
CDRT1-205ENST00000475944 AK7Q96M32 723 aa15□□□□□ -0.01
CDRT1-205ENST00000475944 ITGB4P16144 1822 aa15□□□□□ -0.01
CDRT1-205ENST00000475944 C4BP0C0L5 1744 aa15□□□□□ -0.01
CDRT1-205ENST00000475944 C1QTNF8P60827 252 aa14.99□□□□□ -0.01
CDRT1-205ENST00000475944 NKX1-1Q15270 411 aaPredicted RBP14.99□□□□□ -0.01
CDRT1-205ENST00000475944 PIGBQ92521 554 aa14.98□□□□□ -0.01
CDRT1-205ENST00000475944 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.98□□□□□ -0.01
CDRT1-205ENST00000475944 CLSPNQ9HAW4 1339 aa14.97□□□□□ -0.01
CDRT1-205ENST00000475944 YBX3P16989 372 aaKnown RBP eCLIP14.97□□□□□ -0.01
CDRT1-205ENST00000475944 EYA1Q99502 592 aa14.97□□□□□ -0.01
CDRT1-205ENST00000475944 CD2APQ9Y5K6 639 aa14.97□□□□□ -0.01
CDRT1-205ENST00000475944 MAP2P11137 1827 aaKnown RBP14.96□□□□□ -0.01
CDRT1-205ENST00000475944 SENP3-EIF4A1A0A087X0R7 540 aa14.96□□□□□ -0.01
CDRT1-205ENST00000475944 GIGYF1O75420 1035 aaPredicted RBP14.96□□□□□ -0.01
CDRT1-205ENST00000475944 TMOD3Q9NYL9 352 aa14.96□□□□□ -0.01
CDRT1-205ENST00000475944 POLKQ9UBT6 870 aa14.96□□□□□ -0.01
CDRT1-205ENST00000475944 LOC102724428A0A0B4J2F2 783 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 PHF14O94880 888 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 SSFA2P28290 1259 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 SIK1P57059 783 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 IFNL2Q8IZJ0 200 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 POLR3GLQ9BT43 218 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 PLEKHG2Q9H7P9 1386 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 UBR3Q6ZT12 1888 aa14.95□□□□□ -0.02
CDRT1-205ENST00000475944 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.94□□□□□ -0.02
CDRT1-205ENST00000475944 PHKG2P15735 406 aa14.94□□□□□ -0.02
CDRT1-205ENST00000475944 EIF4A2Q14240 407 aaKnown RBP14.92□□□□□ -0.02
CDRT1-205ENST00000475944 AMIGO3Q86WK7 504 aa14.92□□□□□ -0.02
CDRT1-205ENST00000475944 LINC00116Q8NCU8 138 aa14.92□□□□□ -0.02
CDRT1-205ENST00000475944 ASAP1Q9ULH1 1129 aa14.92□□□□□ -0.02
CDRT1-205ENST00000475944 ATP6V1AP38606 617 aa14.91□□□□□ -0.02
CDRT1-205ENST00000475944 TNNT2P45379 298 aaPredicted RBP14.91□□□□□ -0.02
CDRT1-205ENST00000475944 GNPATO15228 680 aa14.9□□□□□ -0.02
CDRT1-205ENST00000475944 EIF4G2P78344 907 aaKnown RBP eCLIP14.9□□□□□ -0.02
CDRT1-205ENST00000475944 SMIM5Q71RC9 77 aa14.9□□□□□ -0.02
CDRT1-205ENST00000475944 IGSF1Q8N6C5 1336 aa14.9□□□□□ -0.02
CDRT1-205ENST00000475944 GOLGB1Q14789 3259 aaKnown RBP14.9□□□□□ -0.02
CDRT1-205ENST00000475944 HSP90AB1P08238 724 aaKnown RBP14.89□□□□□ -0.03
CDRT1-205ENST00000475944 ITPK1Q13572 414 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms