RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 RRS1Q15050 365 aaKnown RBP8.78□□□□□ -1
ATG4A-207ENST00000474825 CCDC27Q2M243 656 aa8.78□□□□□ -1
ATG4A-207ENST00000474825 RUNDC1Q96C34 613 aa8.78□□□□□ -1
ATG4A-207ENST00000474825 ALS2Q96Q42 1657 aa8.78□□□□□ -1
ATG4A-207ENST00000474825 SPATA31A3Q5VYP0 1347 aa8.78□□□□□ -1
ATG4A-207ENST00000474825 FLT4P35916 1363 aa8.77□□□□□ -1.01
ATG4A-207ENST00000474825 PHRF1Q9P1Y6 1649 aaKnown RBP8.77□□□□□ -1.01
ATG4A-207ENST00000474825 ARHGEF25Q86VW2 580 aa8.77□□□□□ -1.01
ATG4A-207ENST00000474825 PNNQ9H307 717 aaKnown RBP8.77□□□□□ -1.01
ATG4A-207ENST00000474825 MAP2P11137 1827 aaKnown RBP8.77□□□□□ -1.01
ATG4A-207ENST00000474825 PEAK1Q9H792 1746 aa8.77□□□□□ -1.01
ATG4A-207ENST00000474825 APAF1O14727 1248 aa8.76□□□□□ -1.01
ATG4A-207ENST00000474825 GCP02774 474 aa8.76□□□□□ -1.01
ATG4A-207ENST00000474825 U2AF1L5P0DN76 240 aaPredicted RBP8.76□□□□□ -1.01
ATG4A-207ENST00000474825 U2AF1Q01081 240 aaKnown RBP eCLIP8.76□□□□□ -1.01
ATG4A-207ENST00000474825 EIF4A2Q14240 407 aaKnown RBP8.76□□□□□ -1.01
ATG4A-207ENST00000474825 HSP90AB2PQ58FF8 381 aa8.76□□□□□ -1.01
ATG4A-207ENST00000474825 TRMT2AQ8IZ69 625 aaKnown RBP8.76□□□□□ -1.01
ATG4A-207ENST00000474825 IP6K1Q92551 441 aa8.76□□□□□ -1.01
ATG4A-207ENST00000474825 RSPH6AQ9H0K4 717 aa8.76□□□□□ -1.01
ATG4A-207ENST00000474825 TNS3Q68CZ2 1445 aa8.76□□□□□ -1.01
ATG4A-207ENST00000474825 MED1Q15648 1581 aaPredicted RBP8.76□□□□□ -1.01
ATG4A-207ENST00000474825 ARHGEF10O15013 1369 aa8.75□□□□□ -1.01
ATG4A-207ENST00000474825 KDRP35968 1356 aa8.75□□□□□ -1.01
ATG4A-207ENST00000474825 HOXC9P31274 260 aa8.75□□□□□ -1.01
ATG4A-207ENST00000474825 RGPD1P0DJD0 1748 aa8.74□□□□□ -1.01
ATG4A-207ENST00000474825 XPCQ01831 940 aaPredicted RBP8.74□□□□□ -1.01
ATG4A-207ENST00000474825 TCP11L2Q8N4U5 519 aa8.74□□□□□ -1.01
ATG4A-207ENST00000474825 IGSF1Q8N6C5 1336 aa8.74□□□□□ -1.01
ATG4A-207ENST00000474825 ABCC6O95255 1503 aa8.74□□□□□ -1.01
ATG4A-207ENST00000474825 CPDO75976 1380 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 NHSL1Q5SYE7 1610 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 NCAPD2Q15021 1401 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 U2SURPO15042 1029 aaKnown RBP8.73□□□□□ -1.01
ATG4A-207ENST00000474825 PPM1GO15355 546 aaPredicted RBP8.73□□□□□ -1.01
ATG4A-207ENST00000474825 EMP3P54852 163 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 NUTM2GQ5VZR2 741 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 WDR63Q8IWG1 891 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 WWC1Q8IX03 1113 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 CCDC146Q8IYE0 955 aa8.73□□□□□ -1.01
ATG4A-207ENST00000474825 DDX17Q92841 729 aaKnown RBP8.73□□□□□ -1.01
ATG4A-207ENST00000474825 AHDC1Q5TGY3 1603 aaPredicted RBP8.72□□□□□ -1.01
ATG4A-207ENST00000474825 TMPOP42166 694 aaKnown RBP8.72□□□□□ -1.01
ATG4A-207ENST00000474825 AMPHP49418 695 aa8.72□□□□□ -1.01
ATG4A-207ENST00000474825 SLFN5Q08AF3 891 aa8.72□□□□□ -1.01
ATG4A-207ENST00000474825 KRTAP3-3Q9BYR6 98 aa8.72□□□□□ -1.01
ATG4A-207ENST00000474825 KRTAP3-2Q9BYR7 98 aa8.72□□□□□ -1.01
ATG4A-207ENST00000474825 RNF123Q5XPI4 1314 aa8.72□□□□□ -1.01
ATG4A-207ENST00000474825 CRYBG1Q9Y4K1 1723 aa8.71□□□□□ -1.01
ATG4A-207ENST00000474825 PRKAR2BP31323 418 aa8.71□□□□□ -1.02
ATG4A-207ENST00000474825 GOLGA2Q08379 1002 aa8.71□□□□□ -1.02
ATG4A-207ENST00000474825 DUSP27Q5VZP5 1158 aa8.71□□□□□ -1.02
ATG4A-207ENST00000474825 EYA1Q99502 592 aa8.71□□□□□ -1.02
ATG4A-207ENST00000474825 IL16Q14005 1332 aa8.71□□□□□ -1.02
ATG4A-207ENST00000474825 PLEKHG2Q9H7P9 1386 aa8.71□□□□□ -1.02
ATG4A-207ENST00000474825 E9PSI1 815 aa8.7□□□□□ -1.02
ATG4A-207ENST00000474825 NFE2L2Q16236 605 aa8.7□□□□□ -1.02
ATG4A-207ENST00000474825 CDCA7LQ96GN5 454 aa8.7□□□□□ -1.02
ATG4A-207ENST00000474825 PHACTR3Q96KR7 559 aa8.7□□□□□ -1.02
ATG4A-207ENST00000474825 SOX12O15370 315 aa8.69□□□□□ -1.02
ATG4A-207ENST00000474825 SULT6B1Q6IMI4 303 aa8.69□□□□□ -1.02
ATG4A-207ENST00000474825 C3orf67Q6ZVT6 689 aa8.69□□□□□ -1.02
ATG4A-207ENST00000474825 PDCD7Q8N8D1 485 aaKnown RBP8.69□□□□□ -1.02
ATG4A-207ENST00000474825 LRRC59Q96AG4 307 aaKnown RBP8.69□□□□□ -1.02
ATG4A-207ENST00000474825 HS3ST6Q96QI5 342 aa8.69□□□□□ -1.02
ATG4A-207ENST00000474825 AXIN2Q9Y2T1 843 aa8.69□□□□□ -1.02
ATG4A-207ENST00000474825 MAPK8IP3Q9UPT6 1336 aa8.69□□□□□ -1.02
ATG4A-207ENST00000474825 COL18A1P39060 1754 aa8.68□□□□□ -1.02
ATG4A-207ENST00000474825 HMOX1P09601 288 aa8.68□□□□□ -1.02
ATG4A-207ENST00000474825 AEBP1Q8IUX7 1158 aa8.68□□□□□ -1.02
ATG4A-207ENST00000474825 SALL2Q9Y467 1007 aaPredicted RBP8.68□□□□□ -1.02
ATG4A-207ENST00000474825 LMO7Q8WWI1 1683 aa8.68□□□□□ -1.02
ATG4A-207ENST00000474825 CAMTA1Q9Y6Y1 1673 aa8.68□□□□□ -1.02
ATG4A-207ENST00000474825 POTEB3A0JP26 581 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 ERBB3P21860 1342 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 RIPK4P57078 832 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 NBPF6Q5VWK0 638 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 LMOD2Q6P5Q4 547 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 POTEBQ6S5H4 581 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 L3MBTL3Q96JM7 780 aaPredicted RBP8.67□□□□□ -1.02
ATG4A-207ENST00000474825 NBPF4Q96M43 638 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 ROBO1Q9Y6N7 1651 aa8.67□□□□□ -1.02
ATG4A-207ENST00000474825 LTN1O94822 1766 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 COL22A1Q8NFW1 1626 aaPredicted RBP8.66□□□□□ -1.02
ATG4A-207ENST00000474825 KIAA0232Q92628 1395 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 SENP3-EIF4A1A0A087X0R7 540 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 HTATSF1O43719 755 aaKnown RBP8.66□□□□□ -1.02
ATG4A-207ENST00000474825 NEFMP07197 916 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 ZNF853P0CG23 659 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 PYGBP11216 843 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 LMOD3Q0VAK6 560 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 CABLES1Q8TDN4 633 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 ANKRD24Q8TF21 1146 aa8.66□□□□□ -1.02
ATG4A-207ENST00000474825 RRP7AQ9Y3A4 280 aaKnown RBP8.66□□□□□ -1.02
ATG4A-207ENST00000474825 JCADQ9P266 1359 aa8.65□□□□□ -1.02
ATG4A-207ENST00000474825 ZC3H6P61129 1189 aaKnown RBP8.65□□□□□ -1.02
ATG4A-207ENST00000474825 GAS2L2Q8NHY3 880 aa8.65□□□□□ -1.02
ATG4A-207ENST00000474825 PCDHB8Q9UN66 801 aa8.65□□□□□ -1.02
ATG4A-207ENST00000474825 COL16A1Q07092 1604 aaPredicted RBP8.65□□□□□ -1.03
ATG4A-207ENST00000474825 SPATA31A6Q5VVP1 1343 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms