RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 HAP1P54257 671 aaPredicted RBP15.62■□□□□ 0.09
SYNE1-222ENST00000474655 MCM10Q7L590 875 aa15.62■□□□□ 0.09
SYNE1-222ENST00000474655 LMTK3Q96Q04 1460 aa15.62■□□□□ 0.09
SYNE1-222ENST00000474655 NCAPD2Q15021 1401 aa15.61■□□□□ 0.09
SYNE1-222ENST00000474655 CAMTA1Q9Y6Y1 1673 aa15.61■□□□□ 0.09
SYNE1-222ENST00000474655 KRT28Q7Z3Y7 464 aa15.61■□□□□ 0.09
SYNE1-222ENST00000474655 GCP02774 474 aa15.6■□□□□ 0.09
SYNE1-222ENST00000474655 ARHGEF25Q86VW2 580 aa15.6■□□□□ 0.09
SYNE1-222ENST00000474655 ATF3P18847 181 aa15.59■□□□□ 0.09
SYNE1-222ENST00000474655 SKAP1Q86WV1 359 aa15.59■□□□□ 0.09
SYNE1-222ENST00000474655 KDM4FA0A1W2PPD8 638 aa15.59■□□□□ 0.09
SYNE1-222ENST00000474655 TMEM57Q8N5G2 664 aa15.59■□□□□ 0.09
SYNE1-222ENST00000474655 RTF1Q92541 710 aaKnown RBP15.59■□□□□ 0.09
SYNE1-222ENST00000474655 ZBTB40Q9NUA8 1239 aa15.59■□□□□ 0.09
SYNE1-222ENST00000474655 MSH6P52701 1360 aa15.59■□□□□ 0.09
SYNE1-222ENST00000474655 HSPA2P54652 639 aa15.58■□□□□ 0.08
SYNE1-222ENST00000474655 RWDD1Q9H446 243 aaPredicted RBP15.58■□□□□ 0.08
SYNE1-222ENST00000474655 VIRMAQ69YN4 1812 aaKnown RBP15.58■□□□□ 0.08
SYNE1-222ENST00000474655 CACNA1FO60840 1977 aa15.58■□□□□ 0.08
SYNE1-222ENST00000474655 CADPS2Q86UW7 1296 aa15.57■□□□□ 0.08
SYNE1-222ENST00000474655 ITPRIPQ8IWB1 547 aa15.57■□□□□ 0.08
SYNE1-222ENST00000474655 ABCC4O15439 1325 aa15.57■□□□□ 0.08
SYNE1-222ENST00000474655 MED1Q15648 1581 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-222ENST00000474655 LMO7Q8WWI1 1683 aa15.57■□□□□ 0.08
SYNE1-222ENST00000474655 MAP3K5Q99683 1374 aa15.57■□□□□ 0.08
SYNE1-222ENST00000474655 GNAT3A8MTJ3 354 aa15.57■□□□□ 0.08
SYNE1-222ENST00000474655 ELL2O00472 640 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-222ENST00000474655 XPCQ01831 940 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-222ENST00000474655 HDAC1Q13547 482 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-222ENST00000474655 BABAM1Q9NWV8 329 aa15.57■□□□□ 0.08
SYNE1-222ENST00000474655 RGPD5Q99666 1765 aa15.56■□□□□ 0.08
SYNE1-222ENST00000474655 NBPF6Q5VWK0 638 aa15.56■□□□□ 0.08
SYNE1-222ENST00000474655 NBPF4Q96M43 638 aa15.56■□□□□ 0.08
SYNE1-222ENST00000474655 CRYBG1Q9Y4K1 1723 aa15.56■□□□□ 0.08
SYNE1-222ENST00000474655 CHMP4BQ9H444 224 aaKnown RBP15.55■□□□□ 0.08
SYNE1-222ENST00000474655 LTV1Q96GA3 475 aaPredicted RBP15.54■□□□□ 0.08
SYNE1-222ENST00000474655 API5Q9BZZ5 524 aaKnown RBP15.54■□□□□ 0.08
SYNE1-222ENST00000474655 COL18A1P39060 1754 aa15.54■□□□□ 0.08
SYNE1-222ENST00000474655 PXDNQ92626 1479 aa15.54■□□□□ 0.08
SYNE1-222ENST00000474655 CEMIPQ8WUJ3 1361 aa15.53■□□□□ 0.08
SYNE1-222ENST00000474655 SOS1Q07889 1333 aaPredicted RBP15.53■□□□□ 0.08
SYNE1-222ENST00000474655 NPHP3Q7Z494 1330 aa15.53■□□□□ 0.08
SYNE1-222ENST00000474655 ABCC6O95255 1503 aa15.53■□□□□ 0.08
SYNE1-222ENST00000474655 ZBTB7BO15156 539 aaPredicted RBP15.53■□□□□ 0.08
SYNE1-222ENST00000474655 IL17REQ8NFR9 667 aa15.53■□□□□ 0.08
SYNE1-222ENST00000474655 KRT24Q2M2I5 525 aa15.52■□□□□ 0.08
SYNE1-222ENST00000474655 TSPYL4Q9UJ04 414 aa15.52■□□□□ 0.08
SYNE1-222ENST00000474655 MSH5O43196 834 aa15.52■□□□□ 0.07
SYNE1-222ENST00000474655 FAM161AQ3B820 660 aa15.52■□□□□ 0.07
SYNE1-222ENST00000474655 RGS12O14924 1447 aa15.51■□□□□ 0.07
SYNE1-222ENST00000474655 C8orf34Q49A92 452 aa15.51■□□□□ 0.07
SYNE1-222ENST00000474655 TNS3Q68CZ2 1445 aa15.51■□□□□ 0.07
SYNE1-222ENST00000474655 SMC5Q8IY18 1101 aa15.51■□□□□ 0.07
SYNE1-222ENST00000474655 USHBP1Q8N6Y0 703 aa15.51■□□□□ 0.07
SYNE1-222ENST00000474655 FAM208AQ9UK61 1670 aaKnown RBP15.51■□□□□ 0.07
SYNE1-222ENST00000474655 KDM3BQ7LBC6 1761 aa15.5■□□□□ 0.07
SYNE1-222ENST00000474655 PTPRCP08575 1304 aa15.5■□□□□ 0.07
SYNE1-222ENST00000474655 RGS3P49796 1198 aa15.5■□□□□ 0.07
SYNE1-222ENST00000474655 ADAMTS7Q9UKP4 1686 aa15.5■□□□□ 0.07
SYNE1-222ENST00000474655 TAF7Q15545 349 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-222ENST00000474655 INTS3Q68E01 1043 aaKnown RBP15.49■□□□□ 0.07
SYNE1-222ENST00000474655 LMOD2Q6P5Q4 547 aa15.49■□□□□ 0.07
SYNE1-222ENST00000474655 MIS18AQ9NYP9 233 aa15.49■□□□□ 0.07
SYNE1-222ENST00000474655 PDZRN3Q9UPQ7 1066 aa15.49■□□□□ 0.07
SYNE1-222ENST00000474655 OVOS2A0A0G2JMS6 1433 aa15.49■□□□□ 0.07
SYNE1-222ENST00000474655 ANP32AP39687 249 aaKnown RBP15.49■□□□□ 0.07
SYNE1-222ENST00000474655 AMOTQ4VCS5 1084 aa15.49■□□□□ 0.07
SYNE1-222ENST00000474655 ANKRD24Q8TF21 1146 aa15.49■□□□□ 0.07
SYNE1-222ENST00000474655 LRRC59Q96AG4 307 aaKnown RBP15.49■□□□□ 0.07
SYNE1-222ENST00000474655 AXIN2Q9Y2T1 843 aa15.49■□□□□ 0.07
SYNE1-222ENST00000474655 ERBB3P21860 1342 aa15.48■□□□□ 0.07
SYNE1-222ENST00000474655 SPATA31A3Q5VYP0 1347 aa15.48■□□□□ 0.07
SYNE1-222ENST00000474655 PLEKHG2Q9H7P9 1386 aa15.47■□□□□ 0.07
SYNE1-222ENST00000474655 N4BP2Q86UW6 1770 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-222ENST00000474655 PLEKHO1Q53GL0 409 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-222ENST00000474655 AKAP4Q5JQC9 854 aa15.47■□□□□ 0.07
SYNE1-222ENST00000474655 SIPA1L3O60292 1781 aaPredicted RBP15.46■□□□□ 0.07
SYNE1-222ENST00000474655 DDX17Q92841 729 aaKnown RBP15.46■□□□□ 0.07
SYNE1-222ENST00000474655 ZBTB7CA1YPR0 619 aa15.45■□□□□ 0.06
SYNE1-222ENST00000474655 SLC4A2P04920 1241 aa15.45■□□□□ 0.06
SYNE1-222ENST00000474655 BRINP3Q76B58 766 aa15.45■□□□□ 0.06
SYNE1-222ENST00000474655 IPO9Q96P70 1041 aaKnown RBP15.45■□□□□ 0.06
SYNE1-222ENST00000474655 CPDO75976 1380 aa15.45■□□□□ 0.06
SYNE1-222ENST00000474655 ZC3H6P61129 1189 aaKnown RBP15.43■□□□□ 0.06
SYNE1-222ENST00000474655 CCDC30Q5VVM6 783 aa15.43■□□□□ 0.06
SYNE1-222ENST00000474655 ZNF335Q9H4Z2 1342 aaPredicted RBP15.43■□□□□ 0.06
SYNE1-222ENST00000474655 ZNF530Q6P9A1 599 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-222ENST00000474655 LGR6Q9HBX8 967 aa15.42■□□□□ 0.06
SYNE1-222ENST00000474655 SOS2Q07890 1332 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-222ENST00000474655 SCN11AQ9UI33 1791 aa15.42■□□□□ 0.06
SYNE1-222ENST00000474655 HOXB7P09629 217 aa15.41■□□□□ 0.06
SYNE1-222ENST00000474655 NUCB1Q02818 461 aa15.41■□□□□ 0.06
SYNE1-222ENST00000474655 SIRT2Q8IXJ6 389 aa15.41■□□□□ 0.06
SYNE1-222ENST00000474655 GCC1Q96CN9 775 aa15.41■□□□□ 0.06
SYNE1-222ENST00000474655 STK31Q9BXU1 1019 aa15.41■□□□□ 0.06
SYNE1-222ENST00000474655 SLAIN2Q9P270 581 aa15.41■□□□□ 0.06
SYNE1-222ENST00000474655 NHSL1Q5SYE7 1610 aa15.4■□□□□ 0.06
SYNE1-222ENST00000474655 G2E3Q7L622 706 aa15.4■□□□□ 0.06
SYNE1-222ENST00000474655 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.4■□□□□ 0.06
SYNE1-222ENST00000474655 PKD1L3Q7Z443 1732 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms