RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 WDR63Q8IWG1 891 aa13.52□□□□□ -0.25
COL12A1-206ENST00000474564 PHACTR3Q96KR7 559 aa13.52□□□□□ -0.25
COL12A1-206ENST00000474564 TRPC5Q9UL62 973 aaPredicted RBP13.52□□□□□ -0.25
COL12A1-206ENST00000474564 RRP7AQ9Y3A4 280 aaKnown RBP13.52□□□□□ -0.25
COL12A1-206ENST00000474564 LMO7Q8WWI1 1683 aa13.51□□□□□ -0.25
COL12A1-206ENST00000474564 AFF2P51816 1311 aa13.51□□□□□ -0.25
COL12A1-206ENST00000474564 EXOC5O00471 708 aa13.51□□□□□ -0.25
COL12A1-206ENST00000474564 GOLGA2Q08379 1002 aa13.51□□□□□ -0.25
COL12A1-206ENST00000474564 ZNF530Q6P9A1 599 aaPredicted RBP13.51□□□□□ -0.25
COL12A1-206ENST00000474564 ZCRB1Q8TBF4 217 aaKnown RBP13.51□□□□□ -0.25
COL12A1-206ENST00000474564 A0A0G2JS52 829 aa13.5□□□□□ -0.25
COL12A1-206ENST00000474564 MYT1Q01538 1121 aa13.5□□□□□ -0.25
COL12A1-206ENST00000474564 MTHFSDQ2M296 383 aaKnown RBP13.5□□□□□ -0.25
COL12A1-206ENST00000474564 AKAP4Q5JQC9 854 aa13.5□□□□□ -0.25
COL12A1-206ENST00000474564 IFNL2Q8IZJ0 200 aa13.5□□□□□ -0.25
COL12A1-206ENST00000474564 MYH16Q9H6N6 1097 aa13.5□□□□□ -0.25
COL12A1-206ENST00000474564 RGPD1P0DJD0 1748 aa13.5□□□□□ -0.25
COL12A1-206ENST00000474564 SLIT2O94813 1529 aa13.49□□□□□ -0.25
COL12A1-206ENST00000474564 SPATA31A1Q5TZJ5 1347 aa13.49□□□□□ -0.25
COL12A1-206ENST00000474564 SPATA31A5Q5VU36 1347 aa13.49□□□□□ -0.25
COL12A1-206ENST00000474564 SPATA31A7Q8IWB4 1347 aa13.49□□□□□ -0.25
COL12A1-206ENST00000474564 WWC1Q8IX03 1113 aa13.49□□□□□ -0.25
COL12A1-206ENST00000474564 RGPD5Q99666 1765 aa13.49□□□□□ -0.25
COL12A1-206ENST00000474564 NWD2Q9ULI1 1742 aa13.49□□□□□ -0.25
COL12A1-206ENST00000474564 NCAPD2Q15021 1401 aa13.48□□□□□ -0.25
COL12A1-206ENST00000474564 PCDH11XQ9BZA7 1347 aa13.48□□□□□ -0.25
COL12A1-206ENST00000474564 PCDH11YQ9BZA8 1340 aa13.48□□□□□ -0.25
COL12A1-206ENST00000474564 E9PSI1 815 aa13.48□□□□□ -0.25
COL12A1-206ENST00000474564 BARGINQ6ZT62 677 aa13.48□□□□□ -0.25
COL12A1-206ENST00000474564 PHF23Q9BUL5 403 aaPredicted RBP13.48□□□□□ -0.25
COL12A1-206ENST00000474564 QTRT2Q9H974 415 aaKnown RBP13.48□□□□□ -0.25
COL12A1-206ENST00000474564 SENP3-EIF4A1A0A087X0R7 540 aa13.47□□□□□ -0.25
COL12A1-206ENST00000474564 TEFQ10587 303 aa13.47□□□□□ -0.25
COL12A1-206ENST00000474564 DDB1Q16531 1140 aa13.47□□□□□ -0.25
COL12A1-206ENST00000474564 PLCH1Q4KWH8 1693 aa13.47□□□□□ -0.25
COL12A1-206ENST00000474564 LRP6O75581 1613 aa13.46□□□□□ -0.25
COL12A1-206ENST00000474564 MAP3K5Q99683 1374 aa13.46□□□□□ -0.25
COL12A1-206ENST00000474564 IL16Q14005 1332 aa13.46□□□□□ -0.25
COL12A1-206ENST00000474564 GNAI1P63096 354 aa13.46□□□□□ -0.25
COL12A1-206ENST00000474564 DDX54Q8TDD1 881 aaKnown RBP13.46□□□□□ -0.25
COL12A1-206ENST00000474564 GJD4Q96KN9 370 aaPredicted RBP13.46□□□□□ -0.25
COL12A1-206ENST00000474564 DCAF5Q96JK2 942 aa13.45□□□□□ -0.26
COL12A1-206ENST00000474564 LAS1LQ9Y4W2 734 aaKnown RBP13.45□□□□□ -0.26
COL12A1-206ENST00000474564 BCL9LQ86UU0 1499 aa13.44□□□□□ -0.26
COL12A1-206ENST00000474564 TRIM35Q9UPQ4 493 aa13.44□□□□□ -0.26
COL12A1-206ENST00000474564 OVOS2A0A0G2JMS6 1433 aa13.44□□□□□ -0.26
COL12A1-206ENST00000474564 PHKG2P15735 406 aa13.43□□□□□ -0.26
COL12A1-206ENST00000474564 FAM98CQ17RN3 349 aaKnown RBP13.43□□□□□ -0.26
COL12A1-206ENST00000474564 CHMP4AQ9BY43 222 aa13.43□□□□□ -0.26
COL12A1-206ENST00000474564 BABAM1Q9NWV8 329 aa13.43□□□□□ -0.26
COL12A1-206ENST00000474564 TAF7Q15545 349 aaPredicted RBP13.42□□□□□ -0.26
COL12A1-206ENST00000474564 MPRIPQ6WCQ1 1025 aa13.42□□□□□ -0.26
COL12A1-206ENST00000474564 MCM10Q7L590 875 aa13.42□□□□□ -0.26
COL12A1-206ENST00000474564 IFT57Q9NWB7 429 aa13.42□□□□□ -0.26
COL12A1-206ENST00000474564 RGPD2P0DJD1 1756 aa13.42□□□□□ -0.26
COL12A1-206ENST00000474564 PARP4Q9UKK3 1724 aaKnown RBP13.42□□□□□ -0.26
COL12A1-206ENST00000474564 MEGF6O75095 1541 aa13.41□□□□□ -0.26
COL12A1-206ENST00000474564 CABP4P57796 275 aa13.41□□□□□ -0.26
COL12A1-206ENST00000474564 RBM6P78332 1123 aaKnown RBP13.41□□□□□ -0.26
COL12A1-206ENST00000474564 SLFN5Q08AF3 891 aa13.41□□□□□ -0.26
COL12A1-206ENST00000474564 CFAP44Q96MT7 982 aa13.41□□□□□ -0.26
COL12A1-206ENST00000474564 ZNF521Q96K83 1311 aa13.4□□□□□ -0.26
COL12A1-206ENST00000474564 NRAPQ86VF7 1730 aa13.4□□□□□ -0.26
COL12A1-206ENST00000474564 ERVV-2B6SEH9 535 aa13.4□□□□□ -0.26
COL12A1-206ENST00000474564 RNMTO43148 476 aaKnown RBP13.4□□□□□ -0.26
COL12A1-206ENST00000474564 NEFLP07196 543 aa13.4□□□□□ -0.26
COL12A1-206ENST00000474564 DCTN1Q14203 1278 aa13.4□□□□□ -0.26
COL12A1-206ENST00000474564 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.39□□□□□ -0.27
COL12A1-206ENST00000474564 RXRBP28702 533 aa13.39□□□□□ -0.27
COL12A1-206ENST00000474564 TSPYL4Q9UJ04 414 aa13.39□□□□□ -0.27
COL12A1-206ENST00000474564 ATRNO75882 1429 aa13.39□□□□□ -0.27
COL12A1-206ENST00000474564 BTBD11A6QL63 1104 aa13.38□□□□□ -0.27
COL12A1-206ENST00000474564 CYP27B1O15528 508 aa13.38□□□□□ -0.27
COL12A1-206ENST00000474564 CT47B1P0C2W7 299 aaPredicted RBP13.38□□□□□ -0.27
COL12A1-206ENST00000474564 NKX1-1Q15270 411 aaPredicted RBP13.38□□□□□ -0.27
COL12A1-206ENST00000474564 IL17REQ8NFR9 667 aa13.38□□□□□ -0.27
COL12A1-206ENST00000474564 THUMPD2Q9BTF0 503 aaKnown RBP13.38□□□□□ -0.27
COL12A1-206ENST00000474564 TTC5Q8N0Z6 440 aa13.37□□□□□ -0.27
COL12A1-206ENST00000474564 CDCA7LQ96GN5 454 aa13.37□□□□□ -0.27
COL12A1-206ENST00000474564 TMOD3Q9NYL9 352 aa13.37□□□□□ -0.27
COL12A1-206ENST00000474564 DISP2A7MBM2 1401 aa13.37□□□□□ -0.27
COL12A1-206ENST00000474564 CHL1O00533 1208 aa13.36□□□□□ -0.27
COL12A1-206ENST00000474564 ONECUT3O60422 494 aaPredicted RBP13.36□□□□□ -0.27
COL12A1-206ENST00000474564 SEPT12Q8IYM1 358 aa13.36□□□□□ -0.27
COL12A1-206ENST00000474564 SLC52A2Q9HAB3 445 aa13.36□□□□□ -0.27
COL12A1-206ENST00000474564 LGR6Q9HBX8 967 aa13.36□□□□□ -0.27
COL12A1-206ENST00000474564 TNS2Q63HR2 1409 aa13.36□□□□□ -0.27
COL12A1-206ENST00000474564 CEMIPQ8WUJ3 1361 aa13.35□□□□□ -0.27
COL12A1-206ENST00000474564 ILDR1Q86SU0 546 aaPredicted RBP13.35□□□□□ -0.27
COL12A1-206ENST00000474564 NFATC2IPQ8NCF5 419 aa13.35□□□□□ -0.27
COL12A1-206ENST00000474564 ZNF428Q96B54 188 aa13.35□□□□□ -0.27
COL12A1-206ENST00000474564 SYTL4Q96C24 671 aaPredicted RBP13.35□□□□□ -0.27
COL12A1-206ENST00000474564 DUSP27Q5VZP5 1158 aa13.34□□□□□ -0.27
COL12A1-206ENST00000474564 TRMT2AQ8IZ69 625 aaKnown RBP13.34□□□□□ -0.27
COL12A1-206ENST00000474564 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.34□□□□□ -0.27
COL12A1-206ENST00000474564 MBIPQ9NS73 344 aa13.34□□□□□ -0.27
COL12A1-206ENST00000474564 SOS1Q07889 1333 aaPredicted RBP13.34□□□□□ -0.27
COL12A1-206ENST00000474564 FANCIQ9NVI1 1328 aa13.34□□□□□ -0.27
COL12A1-206ENST00000474564 PKD1L3Q7Z443 1732 aa13.33□□□□□ -0.27
COL12A1-206ENST00000474564 ZNF853P0CG23 659 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms