RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	MAP9	Q49MG5	647 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	SDE2	Q6IQ49	451 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	VPS37A	Q8NEZ2	397 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	CCDC47	Q96A33	483 aa	Known RBP	4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	KIF1C	O43896	1103 aa	Known RBP	4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	HIP1R	O75146	1068 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	FGA	P02671	866 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	CD53	P19397	219 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	SIM2	Q14190	667 aa	Predicted RBP	4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	DHX8	Q14562	1220 aa	Known RBP	4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	FAM161A	Q3B820	660 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	ALDH1L2	Q3SY69	923 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	NUCKS1	Q9H1E3	243 aa	Known RBP	4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	RMI1	Q9H9A7	625 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	AKAP2	Q9Y2D5	859 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	MTA2	O94776	668 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	RECK	O95980	971 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	FMNL3	Q8IVF7	1028 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	KLHL23	Q8NBE8	558 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	CHST12	Q9NRB3	414 aa		4.26	□□□□□ -1.73
UBR3-208	ENST00000474426	IL16	Q14005	1332 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	BOLA2-SMG1P6	H3BVE0	249 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	ATG7	O95352	703 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	TPM3	P06753	285 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	NOP9	Q86U38	636 aa	Known RBP	4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	PLPP6	Q8IY26	295 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	UHMK1	Q8TAS1	419 aa	Known RBP	4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	NEK9	Q8TD19	979 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	LZTS2	Q9BRK4	669 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	SPC25	Q9HBM1	224 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	SLC27A2	O14975	620 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	ZNF132	P52740	706 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	POLA2	Q14181	598 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	ZNF394	Q53GI3	561 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	KRT77	Q7Z794	578 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	NPAS4	Q8IUM7	802 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	DRC7	Q8IY82	874 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	STAG2	Q8N3U4	1231 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	TMC1	Q8TDI8	760 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	CFAP53	Q96M91	514 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	MED4	Q9NPJ6	270 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	MKS1	Q9NXB0	559 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	TMA7	Q9Y2S6	64 aa	Known RBP	4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	PPP1R15A	O75807	674 aa	Predicted RBP	4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	ENPP1	P22413	925 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	CATIP	Q7Z7H3	387 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	DHX38	Q92620	1227 aa	Known RBP	4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	GINM1	Q9NU53	330 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	GJA3	Q9Y6H8	435 aa		4.25	□□□□□ -1.73
UBR3-208	ENST00000474426	TRIM6-TRIM34	B2RNG4	842 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	HMMR	O75330	724 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	CCDC92	Q53HC0	331 aa	Predicted RBP	4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	GJC2	Q5T442	439 aa	Predicted RBP	4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	KIAA1958	Q8N8K9	716 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	PMFBP1	Q8TBY8	1022 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	TRIM34	Q9BYJ4	488 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	CD248	Q9HCU0	757 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	KIF3C	O14782	793 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	OAT	P04181	439 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	MECOM	Q03112	1051 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	COL19A1	Q14993	1142 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	CCDC144B	Q3MJ40	725 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	KCNV1	Q6PIU1	500 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	SLF2	Q8IX21	1173 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	MYO1H	Q8N1T3	1032 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	CHCHD3	Q9NX63	227 aa	Known RBP	4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	PAXBP1	Q9Y5B6	917 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	SPDYE4	A6NLX3	237 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	CCDC93	Q567U6	631 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	ARMC3	Q5W041	872 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	MORC1	Q86VD1	984 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	POLR3C	Q9BUI4	534 aa	Predicted RBP	4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	IP6K2	Q9UHH9	426 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	PCDHGA4	Q9Y5G9	962 aa		4.24	□□□□□ -1.73
UBR3-208	ENST00000474426	DYTN	A2CJ06	578 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	HTATSF1	O43719	755 aa	Known RBP	4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	CAND2	O75155	1236 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	ANKRD13D	Q6ZTN6	518 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	ZBED6	P86452	979 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	TAGLN	Q01995	201 aa	Known RBP	4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	WASHC5	Q12768	1159 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	FXN	Q16595	210 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	CASS4	Q9NQ75	786 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	NEFH	P12036	1026 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	USP5	P45974	858 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	BMS1	Q14692	1282 aa	Known RBP	4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	HSP90B2P	Q58FF3	399 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	LRCH2	Q5VUJ6	765 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	CCAR1	Q8IX12	1150 aa	Known RBP	4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	SAMD3	Q8N6K7	520 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	SMCR8	Q8TEV9	937 aa	Predicted RBP	4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	GIPC2	Q8TF65	315 aa		4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	ERCC4	Q92889	916 aa	Predicted RBP	4.23	□□□□□ -1.73
UBR3-208	ENST00000474426	PRSS47	A8MTI9	375 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TBC1D12	O60347	775 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	TPPP	O94811	219 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	C7	P10643	843 aa		4.22	□□□□□ -1.73
UBR3-208	ENST00000474426	ALDH1B1	P30837	517 aa		4.22	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms