RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 PPP1R1BQ9UD71 204 aaPredicted RBP28.16■■■□□ 2.1
PDLIM4-206ENST00000474421 MEGF6O75095 1541 aa28.16■■■□□ 2.1
PDLIM4-206ENST00000474421 POLR3GLQ9BT43 218 aa28.15■■■□□ 2.1
PDLIM4-206ENST00000474421 SHANK3Q9BYB0 1731 aa28.13■■■□□ 2.09
PDLIM4-206ENST00000474421 HSPA5P11021 654 aaKnown RBP28.11■■■□□ 2.09
PDLIM4-206ENST00000474421 TATP17735 454 aaPredicted RBP28.11■■■□□ 2.09
PDLIM4-206ENST00000474421 USHBP1Q8N6Y0 703 aa28.11■■■□□ 2.09
PDLIM4-206ENST00000474421 SYTL4Q96C24 671 aaPredicted RBP28.1■■■□□ 2.09
PDLIM4-206ENST00000474421 DOT1LQ8TEK3 1739 aa28.09■■■□□ 2.09
PDLIM4-206ENST00000474421 PRIM1P49642 420 aaKnown RBP28.09■■■□□ 2.09
PDLIM4-206ENST00000474421 SLC27A3Q5K4L6 730 aa28.09■■■□□ 2.09
PDLIM4-206ENST00000474421 EMILIN1Q9Y6C2 1016 aa28.09■■■□□ 2.09
PDLIM4-206ENST00000474421 PAPPAQ13219 1627 aa28.08■■■□□ 2.09
PDLIM4-206ENST00000474421 ANKRD26Q9UPS8 1709 aa28.08■■■□□ 2.09
PDLIM4-206ENST00000474421 MAP2P11137 1827 aaKnown RBP28.08■■■□□ 2.09
PDLIM4-206ENST00000474421 PPM1GO15355 546 aaPredicted RBP28.07■■■□□ 2.08
PDLIM4-206ENST00000474421 PDGFDQ9GZP0 370 aaPredicted RBP28.07■■■□□ 2.08
PDLIM4-206ENST00000474421 ZBTB7AO95365 584 aa28.06■■■□□ 2.08
PDLIM4-206ENST00000474421 WASHC2AQ641Q2 1341 aa28.05■■■□□ 2.08
PDLIM4-206ENST00000474421 PCDH11XQ9BZA7 1347 aa28.05■■■□□ 2.08
PDLIM4-206ENST00000474421 PCDH11YQ9BZA8 1340 aa28.05■■■□□ 2.08
PDLIM4-206ENST00000474421 MTFR1LQ9H019 292 aa28.03■■■□□ 2.08
PDLIM4-206ENST00000474421 LRRC4BQ9NT99 713 aa28.03■■■□□ 2.08
PDLIM4-206ENST00000474421 NSD2O96028 1365 aa28.01■■■□□ 2.07
PDLIM4-206ENST00000474421 ATF5Q9Y2D1 282 aaPredicted RBP28.01■■■□□ 2.07
PDLIM4-206ENST00000474421 DCAF8L1A6NGE4 600 aa28■■■□□ 2.07
PDLIM4-206ENST00000474421 PANK3Q9H999 370 aa28■■■□□ 2.07
PDLIM4-206ENST00000474421 POLKQ9UBT6 870 aa28■■■□□ 2.07
PDLIM4-206ENST00000474421 LY75O60449 1722 aa28■■■□□ 2.07
PDLIM4-206ENST00000474421 NCAPD2Q15021 1401 aa28■■■□□ 2.07
PDLIM4-206ENST00000474421 PTGER2P43116 358 aa27.99■■■□□ 2.07
PDLIM4-206ENST00000474421 ZNF827Q17R98 1081 aa27.98■■■□□ 2.07
PDLIM4-206ENST00000474421 AKT1S1Q96B36 256 aa27.97■■■□□ 2.07
PDLIM4-206ENST00000474421 QSER1Q2KHR3 1735 aa27.97■■■□□ 2.07
PDLIM4-206ENST00000474421 PKD1L3Q7Z443 1732 aa27.97■■■□□ 2.07
PDLIM4-206ENST00000474421 HMGB2P26583 209 aaKnown RBP27.96■■■□□ 2.07
PDLIM4-206ENST00000474421 TNNT2P45379 298 aaPredicted RBP27.95■■■□□ 2.06
PDLIM4-206ENST00000474421 SPG7Q9UQ90 795 aa27.95■■■□□ 2.06
PDLIM4-206ENST00000474421 CYP27B1O15528 508 aa27.94■■■□□ 2.06
PDLIM4-206ENST00000474421 EYA1Q99502 592 aa27.94■■■□□ 2.06
PDLIM4-206ENST00000474421 CCNL1Q9UK58 526 aaPredicted RBP27.94■■■□□ 2.06
PDLIM4-206ENST00000474421 SLC16A10Q8TF71 515 aa27.93■■■□□ 2.06
PDLIM4-206ENST00000474421 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.93■■■□□ 2.06
PDLIM4-206ENST00000474421 TFCP2L1Q9NZI6 479 aa27.92■■■□□ 2.06
PDLIM4-206ENST00000474421 SGIP1Q9BQI5 828 aa27.91■■■□□ 2.06
PDLIM4-206ENST00000474421 PLEKHG2Q9H7P9 1386 aa27.89■■■□□ 2.06
PDLIM4-206ENST00000474421 KCNQ4P56696 695 aa27.89■■■□□ 2.06
PDLIM4-206ENST00000474421 EIF4A2Q14240 407 aaKnown RBP27.89■■■□□ 2.06
PDLIM4-206ENST00000474421 NKX1-1Q15270 411 aaPredicted RBP27.89■■■□□ 2.06
PDLIM4-206ENST00000474421 ITGB4P16144 1822 aa27.88■■■□□ 2.05
PDLIM4-206ENST00000474421 MPRIPQ6WCQ1 1025 aa27.88■■■□□ 2.05
PDLIM4-206ENST00000474421 KNSTRNQ9Y448 316 aa27.88■■■□□ 2.05
PDLIM4-206ENST00000474421 MORC1Q86VD1 984 aa27.87■■■□□ 2.05
PDLIM4-206ENST00000474421 SMARCC1Q92922 1105 aaPredicted RBP27.87■■■□□ 2.05
PDLIM4-206ENST00000474421 ARXQ96QS3 562 aa27.87■■■□□ 2.05
PDLIM4-206ENST00000474421 PNPLA7Q6ZV29 1317 aa27.87■■■□□ 2.05
PDLIM4-206ENST00000474421 TUBGCP6Q96RT7 1819 aa27.86■■■□□ 2.05
PDLIM4-206ENST00000474421 TOGARAM1Q9Y4F4 1720 aa27.86■■■□□ 2.05
PDLIM4-206ENST00000474421 FHDC1Q9C0D6 1143 aaPredicted RBP27.85■■■□□ 2.05
PDLIM4-206ENST00000474421 PALLDQ8WX93 1383 aa27.85■■■□□ 2.05
PDLIM4-206ENST00000474421 IFNL2Q8IZJ0 200 aa27.84■■■□□ 2.05
PDLIM4-206ENST00000474421 SYT17Q9BSW7 474 aa27.84■■■□□ 2.05
PDLIM4-206ENST00000474421 POLD1P28340 1107 aa27.83■■■□□ 2.05
PDLIM4-206ENST00000474421 IGSF1Q8N6C5 1336 aa27.83■■■□□ 2.05
PDLIM4-206ENST00000474421 C5P01031 1676 aa27.82■■■□□ 2.04
PDLIM4-206ENST00000474421 MAP3K5Q99683 1374 aa27.81■■■□□ 2.04
PDLIM4-206ENST00000474421 COL24A1Q17RW2 1714 aa27.81■■■□□ 2.04
PDLIM4-206ENST00000474421 PHKG2P15735 406 aa27.8■■■□□ 2.04
PDLIM4-206ENST00000474421 PIGBQ92521 554 aa27.8■■■□□ 2.04
PDLIM4-206ENST00000474421 KIF7Q2M1P5 1343 aa27.8■■■□□ 2.04
PDLIM4-206ENST00000474421 TAF1LQ8IZX4 1826 aa27.79■■■□□ 2.04
PDLIM4-206ENST00000474421 TMOD3Q9NYL9 352 aa27.79■■■□□ 2.04
PDLIM4-206ENST00000474421 YY1P25490 414 aa27.78■■■□□ 2.04
PDLIM4-206ENST00000474421 FLAD1Q8NFF5 587 aa27.77■■■□□ 2.04
PDLIM4-206ENST00000474421 MSH5O43196 834 aa27.76■■■□□ 2.03
PDLIM4-206ENST00000474421 HSP90AB1P08238 724 aaKnown RBP27.75■■■□□ 2.03
PDLIM4-206ENST00000474421 PLEKHO1Q53GL0 409 aaPredicted RBP27.75■■■□□ 2.03
PDLIM4-206ENST00000474421 AMER1Q5JTC6 1135 aaPredicted RBP27.75■■■□□ 2.03
PDLIM4-206ENST00000474421 COL23A1Q86Y22 540 aaPredicted RBP27.74■■■□□ 2.03
PDLIM4-206ENST00000474421 AMOTQ4VCS5 1084 aa27.73■■■□□ 2.03
PDLIM4-206ENST00000474421 C4BP0C0L5 1744 aa27.72■■■□□ 2.03
PDLIM4-206ENST00000474421 LOC102724428A0A0B4J2F2 783 aa27.71■■■□□ 2.03
PDLIM4-206ENST00000474421 SIK1P57059 783 aa27.71■■■□□ 2.03
PDLIM4-206ENST00000474421 AK7Q96M32 723 aa27.71■■■□□ 2.03
PDLIM4-206ENST00000474421 ERVV-2B6SEH9 535 aa27.7■■■□□ 2.02
PDLIM4-206ENST00000474421 DCAF5Q96JK2 942 aa27.7■■■□□ 2.02
PDLIM4-206ENST00000474421 ZNF530Q6P9A1 599 aaPredicted RBP27.68■■■□□ 2.02
PDLIM4-206ENST00000474421 ASAP1Q9ULH1 1129 aa27.68■■■□□ 2.02
PDLIM4-206ENST00000474421 KLHL34Q8N239 644 aa27.67■■■□□ 2.02
PDLIM4-206ENST00000474421 IL13P35225 146 aa27.66■■■□□ 2.02
PDLIM4-206ENST00000474421 SULT6B1Q6IMI4 303 aa27.66■■■□□ 2.02
PDLIM4-206ENST00000474421 UTRNP46939 3433 aa27.66■■■□□ 2.02
PDLIM4-206ENST00000474421 KDRP35968 1356 aa27.65■■■□□ 2.02
PDLIM4-206ENST00000474421 PER1O15534 1290 aaPredicted RBP27.65■■■□□ 2.02
PDLIM4-206ENST00000474421 C1orf141Q5JVX7 400 aa27.65■■■□□ 2.02
PDLIM4-206ENST00000474421 AEBP1Q8IUX7 1158 aa27.65■■■□□ 2.02
PDLIM4-206ENST00000474421 ATG3Q9NT62 314 aa27.65■■■□□ 2.02
PDLIM4-206ENST00000474421 UBR3Q6ZT12 1888 aa27.65■■■□□ 2.02
PDLIM4-206ENST00000474421 ATP6V1AP38606 617 aa27.64■■■□□ 2.02
PDLIM4-206ENST00000474421 MTHFSP49914 203 aa27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms