RNA–Protein interactions for RNA: ENST00000474136.5

APP-215, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best)

Gene APP, Length 1,309 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-215ENST00000474136 ANKRD36BQ8N2N9 1353 aa28.62■■■□□ 2.17
APP-215ENST00000474136 COL24A1Q17RW2 1714 aa28.61■■■□□ 2.17
APP-215ENST00000474136 YBX3P16989 372 aaKnown RBP eCLIP28.61■■■□□ 2.17
APP-215ENST00000474136 TUBGCP6Q96RT7 1819 aa28.6■■■□□ 2.17
APP-215ENST00000474136 TERF2IPQ9NYB0 399 aa28.6■■■□□ 2.17
APP-215ENST00000474136 FBLN1P23142 703 aa28.59■■■□□ 2.17
APP-215ENST00000474136 SHANK3Q9BYB0 1731 aa28.58■■■□□ 2.17
APP-215ENST00000474136 CCNL1Q9UK58 526 aaPredicted RBP28.57■■■□□ 2.16
APP-215ENST00000474136 MAP3K19Q56UN5 1328 aa28.57■■■□□ 2.16
APP-215ENST00000474136 MSH5O43196 834 aa28.56■■■□□ 2.16
APP-215ENST00000474136 COL23A1Q86Y22 540 aaPredicted RBP28.56■■■□□ 2.16
APP-215ENST00000474136 ZCRB1Q8TBF4 217 aaKnown RBP28.56■■■□□ 2.16
APP-215ENST00000474136 HOXC9P31274 260 aa28.55■■■□□ 2.16
APP-215ENST00000474136 DOT1LQ8TEK3 1739 aa28.55■■■□□ 2.16
APP-215ENST00000474136 MSL1Q68DK7 614 aa28.54■■■□□ 2.16
APP-215ENST00000474136 MEGF6O75095 1541 aa28.54■■■□□ 2.16
APP-215ENST00000474136 CEP350Q5VT06 3117 aa28.53■■■□□ 2.16
APP-215ENST00000474136 AMPHP49418 695 aa28.52■■■□□ 2.16
APP-215ENST00000474136 LY75O60449 1722 aa28.52■■■□□ 2.16
APP-215ENST00000474136 FAM208AQ9UK61 1670 aaKnown RBP28.52■■■□□ 2.16
APP-215ENST00000474136 GRIN3BO60391 1043 aa28.51■■■□□ 2.15
APP-215ENST00000474136 COG3Q96JB2 828 aa28.5■■■□□ 2.15
APP-215ENST00000474136 IFFO2Q5TF58 517 aa28.49■■■□□ 2.15
APP-215ENST00000474136 USP47Q96K76 1375 aa28.48■■■□□ 2.15
APP-215ENST00000474136 USHBP1Q8N6Y0 703 aa28.47■■■□□ 2.15
APP-215ENST00000474136 PUS7Q96PZ0 661 aaKnown RBP28.47■■■□□ 2.15
APP-215ENST00000474136 RGPD2P0DJD1 1756 aa28.46■■■□□ 2.15
APP-215ENST00000474136 NBPF6Q5VWK0 638 aa28.46■■■□□ 2.15
APP-215ENST00000474136 NBPF4Q96M43 638 aa28.46■■■□□ 2.15
APP-215ENST00000474136 ATP10DQ9P241 1426 aa28.46■■■□□ 2.15
APP-215ENST00000474136 RRS1Q15050 365 aaKnown RBP28.43■■■□□ 2.14
APP-215ENST00000474136 TESK2Q96S53 571 aa28.42■■■□□ 2.14
APP-215ENST00000474136 RAPGEF4Q8WZA2 1011 aa28.39■■■□□ 2.13
APP-215ENST00000474136 CD2APQ9Y5K6 639 aa28.39■■■□□ 2.13
APP-215ENST00000474136 RTL1A6NKG5 1358 aa28.37■■■□□ 2.13
APP-215ENST00000474136 ST20-MTHFSA0A0A6YYL1 179 aa28.37■■■□□ 2.13
APP-215ENST00000474136 PALLDQ8WX93 1383 aa28.37■■■□□ 2.13
APP-215ENST00000474136 CGNL1Q0VF96 1302 aa28.36■■■□□ 2.13
APP-215ENST00000474136 TATP17735 454 aaPredicted RBP28.36■■■□□ 2.13
APP-215ENST00000474136 AMIGO3Q86WK7 504 aa28.36■■■□□ 2.13
APP-215ENST00000474136 ZNF526Q8TF50 670 aaPredicted RBP28.36■■■□□ 2.13
APP-215ENST00000474136 GGNBP2Q9H3C7 697 aa28.36■■■□□ 2.13
APP-215ENST00000474136 GPBP1L1Q9HC44 474 aaPredicted RBP28.36■■■□□ 2.13
APP-215ENST00000474136 MPRIPQ6WCQ1 1025 aa28.35■■■□□ 2.13
APP-215ENST00000474136 WWC3Q9ULE0 1092 aa28.35■■■□□ 2.13
APP-215ENST00000474136 C5P01031 1676 aa28.34■■■□□ 2.13
APP-215ENST00000474136 SMIM5Q71RC9 77 aa28.34■■■□□ 2.13
APP-215ENST00000474136 FLAD1Q8NFF5 587 aa28.34■■■□□ 2.13
APP-215ENST00000474136 CCER1Q8TC90 406 aaPredicted RBP28.34■■■□□ 2.13
APP-215ENST00000474136 FYB1O15117 783 aa28.33■■■□□ 2.13
APP-215ENST00000474136 ADCY9O60503 1353 aa28.32■■■□□ 2.12
APP-215ENST00000474136 HSP90AB2PQ58FF8 381 aa28.32■■■□□ 2.12
APP-215ENST00000474136 PCDH11XQ9BZA7 1347 aa28.32■■■□□ 2.12
APP-215ENST00000474136 PCDH11YQ9BZA8 1340 aa28.32■■■□□ 2.12
APP-215ENST00000474136 SMG6Q86US8 1419 aaKnown RBP28.31■■■□□ 2.12
APP-215ENST00000474136 CLSPNQ9HAW4 1339 aa28.31■■■□□ 2.12
APP-215ENST00000474136 TONSLQ96HA7 1378 aa28.3■■■□□ 2.12
APP-215ENST00000474136 CYP27B1O15528 508 aa28.3■■■□□ 2.12
APP-215ENST00000474136 PHF14O94880 888 aa28.29■■■□□ 2.12
APP-215ENST00000474136 AK7Q96M32 723 aa28.29■■■□□ 2.12
APP-215ENST00000474136 IGSF1Q8N6C5 1336 aa28.28■■■□□ 2.12
APP-215ENST00000474136 HSPA6P17066 643 aa28.27■■■□□ 2.12
APP-215ENST00000474136 INSRP06213 1382 aa28.27■■■□□ 2.12
APP-215ENST00000474136 TAF1LQ8IZX4 1826 aa28.26■■■□□ 2.11
APP-215ENST00000474136 C4BP0C0L5 1744 aa28.25■■■□□ 2.11
APP-215ENST00000474136 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.24■■■□□ 2.11
APP-215ENST00000474136 PIGBQ92521 554 aa28.24■■■□□ 2.11
APP-215ENST00000474136 SMARCC1Q92922 1105 aaPredicted RBP28.24■■■□□ 2.11
APP-215ENST00000474136 TOGARAM1Q9Y4F4 1720 aa28.23■■■□□ 2.11
APP-215ENST00000474136 HMGB2P26583 209 aaKnown RBP28.22■■■□□ 2.11
APP-215ENST00000474136 FLT4P35916 1363 aa28.21■■■□□ 2.11
APP-215ENST00000474136 LINC00116Q8NCU8 138 aa28.2■■■□□ 2.11
APP-215ENST00000474136 SLC24A1O60721 1099 aa28.18■■■□□ 2.1
APP-215ENST00000474136 KIF3CO14782 793 aa28.18■■■□□ 2.1
APP-215ENST00000474136 EMILIN1Q9Y6C2 1016 aa28.18■■■□□ 2.1
APP-215ENST00000474136 UBR3Q6ZT12 1888 aa28.17■■■□□ 2.1
APP-215ENST00000474136 LOC102724428A0A0B4J2F2 783 aa28.17■■■□□ 2.1
APP-215ENST00000474136 SSFA2P28290 1259 aa28.17■■■□□ 2.1
APP-215ENST00000474136 SIK1P57059 783 aa28.17■■■□□ 2.1
APP-215ENST00000474136 ITGB4P16144 1822 aa28.16■■■□□ 2.1
APP-215ENST00000474136 TMF1P82094 1093 aa28.15■■■□□ 2.1
APP-215ENST00000474136 NKX1-1Q15270 411 aaPredicted RBP28.15■■■□□ 2.1
APP-215ENST00000474136 NSD3Q9BZ95 1437 aa28.15■■■□□ 2.1
APP-215ENST00000474136 KIF24Q5T7B8 1368 aa28.14■■■□□ 2.1
APP-215ENST00000474136 ITPK1Q13572 414 aa28.14■■■□□ 2.09
APP-215ENST00000474136 GNPATO15228 680 aa28.13■■■□□ 2.09
APP-215ENST00000474136 ASAP1Q9ULH1 1129 aa28.13■■■□□ 2.09
APP-215ENST00000474136 PKD1L3Q7Z443 1732 aa28.12■■■□□ 2.09
APP-215ENST00000474136 CARD14Q9BXL6 1004 aa28.11■■■□□ 2.09
APP-215ENST00000474136 SPG7Q9UQ90 795 aa28.11■■■□□ 2.09
APP-215ENST00000474136 MAP2P11137 1827 aaKnown RBP28.11■■■□□ 2.09
APP-215ENST00000474136 NCAPD2Q15021 1401 aa28.1■■■□□ 2.09
APP-215ENST00000474136 PPM1GO15355 546 aaPredicted RBP28.1■■■□□ 2.09
APP-215ENST00000474136 TMOD3Q9NYL9 352 aa28.1■■■□□ 2.09
APP-215ENST00000474136 MMP10P09238 476 aa28.09■■■□□ 2.09
APP-215ENST00000474136 ATP6V1AP38606 617 aa28.09■■■□□ 2.09
APP-215ENST00000474136 KIF20BQ96Q89 1820 aa28.08■■■□□ 2.09
APP-215ENST00000474136 ZEB1P37275 1124 aaPredicted RBP28.07■■■□□ 2.08
APP-215ENST00000474136 PXDNLA1KZ92 1463 aa28.06■■■□□ 2.08
APP-215ENST00000474136 EYA1Q99502 592 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms