RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 FTSJ3Q8IY81 847 aaKnown RBP8□□□□□ -1.13
CLK1-210ENST00000473565 ANKRD24Q8TF21 1146 aa8□□□□□ -1.13
CLK1-210ENST00000473565 KIF24Q5T7B8 1368 aa8□□□□□ -1.13
CLK1-210ENST00000473565 IGHDP01880 384 aa7.99□□□□□ -1.13
CLK1-210ENST00000473565 RTF1Q92541 710 aaKnown RBP7.99□□□□□ -1.13
CLK1-210ENST00000473565 NPHP3Q7Z494 1330 aa7.99□□□□□ -1.13
CLK1-210ENST00000473565 KDM2BQ8NHM5 1336 aa7.99□□□□□ -1.13
CLK1-210ENST00000473565 CRB1P82279 1406 aa7.99□□□□□ -1.13
CLK1-210ENST00000473565 CT47B1P0C2W7 299 aaPredicted RBP7.99□□□□□ -1.13
CLK1-210ENST00000473565 DZIP1LQ8IYY4 767 aaKnown RBP7.99□□□□□ -1.13
CLK1-210ENST00000473565 GAS2L2Q8NHY3 880 aa7.99□□□□□ -1.13
CLK1-210ENST00000473565 SLAIN2Q9P270 581 aa7.99□□□□□ -1.13
CLK1-210ENST00000473565 CHL1O00533 1208 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 ATF7IPQ6VMQ6 1270 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 ITPRIPQ8IWB1 547 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 TMEM57Q8N5G2 664 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 PCDHB15Q9Y5E8 787 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 PXDNQ92626 1479 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 MRPL50Q8N5N7 158 aaKnown RBP7.98□□□□□ -1.13
CLK1-210ENST00000473565 IL17REQ8NFR9 667 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 TSPYL4Q9UJ04 414 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 NCOA3Q9Y6Q9 1424 aa7.98□□□□□ -1.13
CLK1-210ENST00000473565 GNAT3A8MTJ3 354 aa7.97□□□□□ -1.13
CLK1-210ENST00000473565 MVPQ14764 893 aaKnown RBP7.97□□□□□ -1.13
CLK1-210ENST00000473565 TNS3Q68CZ2 1445 aa7.97□□□□□ -1.13
CLK1-210ENST00000473565 LGR6Q9HBX8 967 aa7.97□□□□□ -1.13
CLK1-210ENST00000473565 SPATA31A3Q5VYP0 1347 aa7.97□□□□□ -1.13
CLK1-210ENST00000473565 ALDH1L2Q3SY69 923 aa7.97□□□□□ -1.13
CLK1-210ENST00000473565 NECTIN2Q92692 538 aa7.97□□□□□ -1.13
CLK1-210ENST00000473565 PHRF1Q9P1Y6 1649 aaKnown RBP7.96□□□□□ -1.13
CLK1-210ENST00000473565 MAP3K5Q99683 1374 aa7.96□□□□□ -1.13
CLK1-210ENST00000473565 RGS3P49796 1198 aa7.96□□□□□ -1.13
CLK1-210ENST00000473565 NLRP2Q9NX02 1062 aa7.96□□□□□ -1.13
CLK1-210ENST00000473565 KIAA0232Q92628 1395 aa7.96□□□□□ -1.14
CLK1-210ENST00000473565 KIF16BQ96L93 1317 aa7.96□□□□□ -1.14
CLK1-210ENST00000473565 ZNF530Q6P9A1 599 aaPredicted RBP7.96□□□□□ -1.14
CLK1-210ENST00000473565 MPRIPQ6WCQ1 1025 aa7.96□□□□□ -1.14
CLK1-210ENST00000473565 CENPQQ7L2Z9 268 aaPredicted RBP7.96□□□□□ -1.14
CLK1-210ENST00000473565 ERBB3P21860 1342 aa7.95□□□□□ -1.14
CLK1-210ENST00000473565 CSB-PGBD3P0DP91 1061 aa7.95□□□□□ -1.14
CLK1-210ENST00000473565 C1orf115Q9H7X2 142 aa7.95□□□□□ -1.14
CLK1-210ENST00000473565 IPO8O15397 1037 aaKnown RBP7.94□□□□□ -1.14
CLK1-210ENST00000473565 KCNQ3O43525 872 aa7.94□□□□□ -1.14
CLK1-210ENST00000473565 LRRC37A3O60309 1634 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 HAP1P54257 671 aaPredicted RBP7.93□□□□□ -1.14
CLK1-210ENST00000473565 G2E3Q7L622 706 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 CRYBG1Q9Y4K1 1723 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 COL18A1P39060 1754 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 SOS2Q07890 1332 aaPredicted RBP7.93□□□□□ -1.14
CLK1-210ENST00000473565 SLC4A2P04920 1241 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 TAF7Q15545 349 aaPredicted RBP7.93□□□□□ -1.14
CLK1-210ENST00000473565 PLEKHO1Q53GL0 409 aaPredicted RBP7.93□□□□□ -1.14
CLK1-210ENST00000473565 ZNF428Q96B54 188 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 PRDM11Q9NQV5 511 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 DDX19BQ9UMR2 479 aa7.93□□□□□ -1.14
CLK1-210ENST00000473565 MS4A1P11836 297 aa7.92□□□□□ -1.14
CLK1-210ENST00000473565 HTATSF1O43719 755 aaKnown RBP7.92□□□□□ -1.14
CLK1-210ENST00000473565 MEGF6O75095 1541 aa7.92□□□□□ -1.14
CLK1-210ENST00000473565 F6X3S4 739 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 BRPF1P55201 1214 aaPredicted RBP7.91□□□□□ -1.14
CLK1-210ENST00000473565 ZBTB40Q9NUA8 1239 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 VIRMAQ69YN4 1812 aaKnown RBP7.91□□□□□ -1.14
CLK1-210ENST00000473565 CEMIPQ8WUJ3 1361 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 AKAP4Q5JQC9 854 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 C1orf141Q5JVX7 400 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 RAPGEF4Q8WZA2 1011 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 NCAPD2Q15021 1401 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 ABCC4O15439 1325 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 PDE4AP27815 886 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 TEFQ10587 303 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 STRN4Q9NRL3 753 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 RGS12O14924 1447 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 FAM208AQ9UK61 1670 aaKnown RBP7.91□□□□□ -1.14
CLK1-210ENST00000473565 CAMTA1Q9Y6Y1 1673 aa7.91□□□□□ -1.14
CLK1-210ENST00000473565 RNMTO43148 476 aaKnown RBP7.9□□□□□ -1.14
CLK1-210ENST00000473565 EIF2S2P20042 333 aaKnown RBP7.9□□□□□ -1.14
CLK1-210ENST00000473565 LMO7Q8WWI1 1683 aa7.9□□□□□ -1.14
CLK1-210ENST00000473565 ZBTB7BO15156 539 aaPredicted RBP7.9□□□□□ -1.14
CLK1-210ENST00000473565 ANXA1P04083 346 aa7.9□□□□□ -1.14
CLK1-210ENST00000473565 AMOTQ4VCS5 1084 aa7.9□□□□□ -1.14
CLK1-210ENST00000473565 SLC4A10Q6U841 1118 aa7.9□□□□□ -1.14
CLK1-210ENST00000473565 ARHGAP45Q92619 1136 aa7.9□□□□□ -1.14
CLK1-210ENST00000473565 API5Q9BZZ5 524 aaKnown RBP7.9□□□□□ -1.14
CLK1-210ENST00000473565 BCL11AQ9H165 835 aa7.9□□□□□ -1.14
CLK1-210ENST00000473565 PDZRN3Q9UPQ7 1066 aa7.9□□□□□ -1.14
CLK1-210ENST00000473565 PRAMEF22A3QJZ6 481 aa7.9□□□□□ -1.15
CLK1-210ENST00000473565 BTBD11A6QL63 1104 aa7.9□□□□□ -1.15
CLK1-210ENST00000473565 NPM2Q86SE8 214 aaKnown RBP7.9□□□□□ -1.15
CLK1-210ENST00000473565 RWDD1Q9H446 243 aaPredicted RBP7.9□□□□□ -1.15
CLK1-210ENST00000473565 USP35Q9P2H5 1018 aa7.9□□□□□ -1.15
CLK1-210ENST00000473565 TATP17735 454 aaPredicted RBP7.89□□□□□ -1.15
CLK1-210ENST00000473565 TOM1L2Q6ZVM7 507 aa7.89□□□□□ -1.15
CLK1-210ENST00000473565 CPDO75976 1380 aa7.89□□□□□ -1.15
CLK1-210ENST00000473565 NHSL1Q5SYE7 1610 aa7.89□□□□□ -1.15
CLK1-210ENST00000473565 SLC39A6Q13433 755 aa7.89□□□□□ -1.15
CLK1-210ENST00000473565 ABCA3Q99758 1704 aa7.89□□□□□ -1.15
CLK1-210ENST00000473565 EIF4A1P60842 406 aaKnown RBP7.88□□□□□ -1.15
CLK1-210ENST00000473565 HDGFL1Q5TGJ6 251 aa7.88□□□□□ -1.15
CLK1-210ENST00000473565 STK31Q9BXU1 1019 aa7.88□□□□□ -1.15
CLK1-210ENST00000473565 BACH2Q9BYV9 841 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms