RNA–Protein interactions for RNA: ENST00000473417.5

SNX4-204, Transcript of sorting nexin 4, humanhuman

TSL 3

Gene SNX4, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-204ENST00000473417 NBPF6Q5VWK0 638 aa24.87■■□□□ 1.57
SNX4-204ENST00000473417 NBPF4Q96M43 638 aa24.87■■□□□ 1.57
SNX4-204ENST00000473417 KIF7Q2M1P5 1343 aa24.86■■□□□ 1.57
SNX4-204ENST00000473417 QSER1Q2KHR3 1735 aa24.86■■□□□ 1.57
SNX4-204ENST00000473417 CGNL1Q0VF96 1302 aa24.86■■□□□ 1.57
SNX4-204ENST00000473417 HSP90AB2PQ58FF8 381 aa24.85■■□□□ 1.57
SNX4-204ENST00000473417 DDX54Q8TDD1 881 aaKnown RBP24.85■■□□□ 1.57
SNX4-204ENST00000473417 USHBP1Q8N6Y0 703 aa24.83■■□□□ 1.57
SNX4-204ENST00000473417 ZCRB1Q8TBF4 217 aaKnown RBP24.83■■□□□ 1.57
SNX4-204ENST00000473417 PANK3Q9H999 370 aa24.83■■□□□ 1.57
SNX4-204ENST00000473417 SPON1Q9HCB6 807 aa24.83■■□□□ 1.57
SNX4-204ENST00000473417 EMILIN1Q9Y6C2 1016 aa24.83■■□□□ 1.57
SNX4-204ENST00000473417 TUBGCP6Q96RT7 1819 aa24.83■■□□□ 1.57
SNX4-204ENST00000473417 NCAPD2Q15021 1401 aa24.83■■□□□ 1.57
SNX4-204ENST00000473417 TOGARAM1Q9Y4F4 1720 aa24.81■■□□□ 1.56
SNX4-204ENST00000473417 ZEB1P37275 1124 aaPredicted RBP24.81■■□□□ 1.56
SNX4-204ENST00000473417 NSD2O96028 1365 aa24.8■■□□□ 1.56
SNX4-204ENST00000473417 ITGB4P16144 1822 aa24.8■■□□□ 1.56
SNX4-204ENST00000473417 STK32BQ9NY57 414 aa24.8■■□□□ 1.56
SNX4-204ENST00000473417 SLC15A2Q16348 729 aa24.79■■□□□ 1.56
SNX4-204ENST00000473417 RAPGEF4Q8WZA2 1011 aa24.79■■□□□ 1.56
SNX4-204ENST00000473417 PDGFDQ9GZP0 370 aaPredicted RBP24.78■■□□□ 1.56
SNX4-204ENST00000473417 WASHC2AQ641Q2 1341 aa24.77■■□□□ 1.56
SNX4-204ENST00000473417 TATP17735 454 aaPredicted RBP24.76■■□□□ 1.55
SNX4-204ENST00000473417 PPP1R1BQ9UD71 204 aaPredicted RBP24.76■■□□□ 1.55
SNX4-204ENST00000473417 PRIM1P49642 420 aaKnown RBP24.74■■□□□ 1.55
SNX4-204ENST00000473417 LRRC4BQ9NT99 713 aa24.74■■□□□ 1.55
SNX4-204ENST00000473417 TAF1LQ8IZX4 1826 aa24.73■■□□□ 1.55
SNX4-204ENST00000473417 COL24A1Q17RW2 1714 aa24.73■■□□□ 1.55
SNX4-204ENST00000473417 C5P01031 1676 aa24.73■■□□□ 1.55
SNX4-204ENST00000473417 PCDH11XQ9BZA7 1347 aa24.73■■□□□ 1.55
SNX4-204ENST00000473417 PCDH11YQ9BZA8 1340 aa24.73■■□□□ 1.55
SNX4-204ENST00000473417 SYTL4Q96C24 671 aaPredicted RBP24.73■■□□□ 1.55
SNX4-204ENST00000473417 POLKQ9UBT6 870 aa24.73■■□□□ 1.55
SNX4-204ENST00000473417 PPM1GO15355 546 aaPredicted RBP24.72■■□□□ 1.55
SNX4-204ENST00000473417 SLC27A3Q5K4L6 730 aa24.72■■□□□ 1.55
SNX4-204ENST00000473417 ZBTB7AO95365 584 aa24.7■■□□□ 1.54
SNX4-204ENST00000473417 ZNF827Q17R98 1081 aa24.7■■□□□ 1.54
SNX4-204ENST00000473417 KNSTRNQ9Y448 316 aa24.68■■□□□ 1.54
SNX4-204ENST00000473417 PTGER2P43116 358 aa24.67■■□□□ 1.54
SNX4-204ENST00000473417 AKT1S1Q96B36 256 aa24.67■■□□□ 1.54
SNX4-204ENST00000473417 EYA1Q99502 592 aa24.67■■□□□ 1.54
SNX4-204ENST00000473417 CYP27B1O15528 508 aa24.66■■□□□ 1.54
SNX4-204ENST00000473417 TNNT2P45379 298 aaPredicted RBP24.66■■□□□ 1.54
SNX4-204ENST00000473417 MTFR1LQ9H019 292 aa24.66■■□□□ 1.54
SNX4-204ENST00000473417 ATF5Q9Y2D1 282 aaPredicted RBP24.64■■□□□ 1.54
SNX4-204ENST00000473417 PLEKHG2Q9H7P9 1386 aa24.64■■□□□ 1.53
SNX4-204ENST00000473417 EIF4A2Q14240 407 aaKnown RBP24.63■■□□□ 1.53
SNX4-204ENST00000473417 SGIP1Q9BQI5 828 aa24.63■■□□□ 1.53
SNX4-204ENST00000473417 DCAF8L1A6NGE4 600 aa24.62■■□□□ 1.53
SNX4-204ENST00000473417 KCNQ4P56696 695 aa24.62■■□□□ 1.53
SNX4-204ENST00000473417 PER1O15534 1290 aaPredicted RBP24.61■■□□□ 1.53
SNX4-204ENST00000473417 SPG7Q9UQ90 795 aa24.61■■□□□ 1.53
SNX4-204ENST00000473417 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.6■■□□□ 1.532e-8■■□□□ 13
SNX4-204ENST00000473417 CCNL1Q9UK58 526 aaPredicted RBP24.6■■□□□ 1.53
SNX4-204ENST00000473417 PNPLA7Q6ZV29 1317 aa24.6■■□□□ 1.53
SNX4-204ENST00000473417 IGSF1Q8N6C5 1336 aa24.6■■□□□ 1.53
SNX4-204ENST00000473417 NKX1-1Q15270 411 aaPredicted RBP24.59■■□□□ 1.53
SNX4-204ENST00000473417 AMER1Q5JTC6 1135 aaPredicted RBP24.59■■□□□ 1.53
SNX4-204ENST00000473417 C4BP0C0L5 1744 aa24.58■■□□□ 1.53
SNX4-204ENST00000473417 PALLDQ8WX93 1383 aa24.58■■□□□ 1.53
SNX4-204ENST00000473417 MORC1Q86VD1 984 aa24.57■■□□□ 1.52
SNX4-204ENST00000473417 UBR3Q6ZT12 1888 aa24.57■■□□□ 1.52
SNX4-204ENST00000473417 MPRIPQ6WCQ1 1025 aa24.56■■□□□ 1.52
SNX4-204ENST00000473417 SLC16A10Q8TF71 515 aa24.56■■□□□ 1.52
SNX4-204ENST00000473417 CNGB1Q14028 1251 aaPredicted RBP24.55■■□□□ 1.52
SNX4-204ENST00000473417 CC2D1BQ5T0F9 858 aaKnown RBP24.55■■□□□ 1.52
SNX4-204ENST00000473417 TFCP2L1Q9NZI6 479 aa24.55■■□□□ 1.52
SNX4-204ENST00000473417 PHKG2P15735 406 aa24.53■■□□□ 1.52
SNX4-204ENST00000473417 FHDC1Q9C0D6 1143 aaPredicted RBP24.53■■□□□ 1.52
SNX4-204ENST00000473417 VIRMAQ69YN4 1812 aaKnown RBP24.53■■□□□ 1.52
SNX4-204ENST00000473417 ZNF831Q5JPB2 1677 aa24.53■■□□□ 1.52
SNX4-204ENST00000473417 YY1P25490 414 aa24.52■■□□□ 1.52
SNX4-204ENST00000473417 IFNL2Q8IZJ0 200 aa24.52■■□□□ 1.52
SNX4-204ENST00000473417 MAP3K5Q99683 1374 aa24.52■■□□□ 1.52
SNX4-204ENST00000473417 PIGBQ92521 554 aa24.51■■□□□ 1.51
SNX4-204ENST00000473417 ARXQ96QS3 562 aa24.51■■□□□ 1.51
SNX4-204ENST00000473417 SMARCC1Q92922 1105 aaPredicted RBP24.5■■□□□ 1.51
SNX4-204ENST00000473417 SYT17Q9BSW7 474 aa24.49■■□□□ 1.51
SNX4-204ENST00000473417 SCN11AQ9UI33 1791 aa24.49■■□□□ 1.51
SNX4-204ENST00000473417 CHD4Q14839 1912 aa24.48■■□□□ 1.51
SNX4-204ENST00000473417 COL5A3P25940 1745 aaPredicted RBP24.47■■□□□ 1.51
SNX4-204ENST00000473417 KDRP35968 1356 aa24.47■■□□□ 1.51
SNX4-204ENST00000473417 HMGB2P26583 209 aaKnown RBP24.47■■□□□ 1.51
SNX4-204ENST00000473417 TMOD3Q9NYL9 352 aa24.47■■□□□ 1.51
SNX4-204ENST00000473417 NPC1L1Q9UHC9 1359 aa24.45■■□□□ 1.5
SNX4-204ENST00000473417 COL23A1Q86Y22 540 aaPredicted RBP24.45■■□□□ 1.5
SNX4-204ENST00000473417 UTRNP46939 3433 aa24.45■■□□□ 1.5
SNX4-204ENST00000473417 KDM6AO15550 1401 aaPredicted RBP24.44■■□□□ 1.5
SNX4-204ENST00000473417 POLD1P28340 1107 aa24.44■■□□□ 1.5
SNX4-204ENST00000473417 DDX10Q13206 875 aaKnown RBP24.44■■□□□ 1.5
SNX4-204ENST00000473417 AEBP1Q8IUX7 1158 aa24.44■■□□□ 1.5
SNX4-204ENST00000473417 IL13P35225 146 aa24.43■■□□□ 1.5
SNX4-204ENST00000473417 PLEKHO1Q53GL0 409 aaPredicted RBP24.43■■□□□ 1.5
SNX4-204ENST00000473417 AMOTQ4VCS5 1084 aa24.42■■□□□ 1.5
SNX4-204ENST00000473417 LOC102724428A0A0B4J2F2 783 aa24.41■■□□□ 1.5
SNX4-204ENST00000473417 HSP90AB1P08238 724 aaKnown RBP24.41■■□□□ 1.5
SNX4-204ENST00000473417 SIK1P57059 783 aa24.41■■□□□ 1.5
SNX4-204ENST00000473417 ASAP1Q9ULH1 1129 aa24.41■■□□□ 1.5
SNX4-204ENST00000473417 CICQ96RK0 1608 aaPredicted RBP24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms