RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SCN11AQ9UI33 1791 aa16.64■□□□□ 0.25
VPS13D-205ENST00000473099 MTHFSDQ2M296 383 aaKnown RBP16.64■□□□□ 0.25
VPS13D-205ENST00000473099 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.64■□□□□ 0.25
VPS13D-205ENST00000473099 COL5A2P05997 1499 aaPredicted RBP16.64■□□□□ 0.25
VPS13D-205ENST00000473099 PLCH1Q4KWH8 1693 aa16.64■□□□□ 0.25
VPS13D-205ENST00000473099 MAP3K5Q99683 1374 aa16.64■□□□□ 0.25
VPS13D-205ENST00000473099 FKBP8Q14318 412 aa16.63■□□□□ 0.25
VPS13D-205ENST00000473099 PLEKHO1Q53GL0 409 aaPredicted RBP16.63■□□□□ 0.25
VPS13D-205ENST00000473099 FANCIQ9NVI1 1328 aa16.63■□□□□ 0.25
VPS13D-205ENST00000473099 GNAT3A8MTJ3 354 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 CSB-PGBD3P0DP91 1061 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 RRP1P56182 461 aaKnown RBP16.62■□□□□ 0.25
VPS13D-205ENST00000473099 CHRNA2Q15822 529 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 USHBP1Q8N6Y0 703 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 CFAP44Q96MT7 982 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 WDR17Q8IZU2 1322 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 ADAMTS7Q9UKP4 1686 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 JCADQ9P266 1359 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 OVOS2A0A0G2JMS6 1433 aa16.62■□□□□ 0.25
VPS13D-205ENST00000473099 WNK3Q9BYP7 1800 aa16.61■□□□□ 0.25
VPS13D-205ENST00000473099 ZNF428Q96B54 188 aa16.61■□□□□ 0.25
VPS13D-205ENST00000473099 NLRP2Q9NX02 1062 aa16.61■□□□□ 0.25
VPS13D-205ENST00000473099 SIPA1L3O60292 1781 aaPredicted RBP16.61■□□□□ 0.25
VPS13D-205ENST00000473099 ZNF853P0CG23 659 aa16.6■□□□□ 0.25
VPS13D-205ENST00000473099 RAPGEF4Q8WZA2 1011 aa16.6■□□□□ 0.25
VPS13D-205ENST00000473099 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS13D-205ENST00000473099 TATP17735 454 aaPredicted RBP16.59■□□□□ 0.25
VPS13D-205ENST00000473099 NRAPQ86VF7 1730 aa16.59■□□□□ 0.25
VPS13D-205ENST00000473099 KDM3BQ7LBC6 1761 aa16.59■□□□□ 0.25
VPS13D-205ENST00000473099 AKAP4Q5JQC9 854 aa16.58■□□□□ 0.24
VPS13D-205ENST00000473099 BABAM1Q9NWV8 329 aa16.58■□□□□ 0.24
VPS13D-205ENST00000473099 CRB1P82279 1406 aa16.57■□□□□ 0.24
VPS13D-205ENST00000473099 FAM83GA6ND36 823 aa16.57■□□□□ 0.24
VPS13D-205ENST00000473099 C1orf141Q5JVX7 400 aa16.57■□□□□ 0.24
VPS13D-205ENST00000473099 TSR2Q969E8 191 aaKnown RBP16.57■□□□□ 0.24
VPS13D-205ENST00000473099 ZNF530Q6P9A1 599 aaPredicted RBP16.56■□□□□ 0.24
VPS13D-205ENST00000473099 THUMPD2Q9BTF0 503 aaKnown RBP16.56■□□□□ 0.24
VPS13D-205ENST00000473099 CARD10Q9BWT7 1032 aa16.56■□□□□ 0.24
VPS13D-205ENST00000473099 SPG7Q9UQ90 795 aa16.56■□□□□ 0.24
VPS13D-205ENST00000473099 LAS1LQ9Y4W2 734 aaKnown RBP16.56■□□□□ 0.24
VPS13D-205ENST00000473099 CEMIPQ8WUJ3 1361 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 CHL1O00533 1208 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 EVA1CP58658 441 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 EXOSC9Q06265 439 aaKnown RBP16.55■□□□□ 0.24
VPS13D-205ENST00000473099 DCTN1Q14203 1278 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 TOM1L2Q6ZVM7 507 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 MCM10Q7L590 875 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 RGS17Q9UGC6 210 aaPredicted RBP16.55■□□□□ 0.24
VPS13D-205ENST00000473099 SHANK3Q9BYB0 1731 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 MEGF6O75095 1541 aa16.55■□□□□ 0.24
VPS13D-205ENST00000473099 SPATA31A6Q5VVP1 1343 aa16.54■□□□□ 0.24
VPS13D-205ENST00000473099 RARSP54136 660 aaKnown RBP16.54■□□□□ 0.24
VPS13D-205ENST00000473099 MBIPQ9NS73 344 aa16.54■□□□□ 0.24
VPS13D-205ENST00000473099 ALDH1L2Q3SY69 923 aa16.53■□□□□ 0.24
VPS13D-205ENST00000473099 SOS1Q07889 1333 aaPredicted RBP16.52■□□□□ 0.24
VPS13D-205ENST00000473099 MEX3CQ5U5Q3 659 aaKnown RBP16.52■□□□□ 0.24
VPS13D-205ENST00000473099 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.52■□□□□ 0.24
VPS13D-205ENST00000473099 HSP90AB1P08238 724 aaKnown RBP16.51■□□□□ 0.23
VPS13D-205ENST00000473099 TAF7Q15545 349 aaPredicted RBP16.51■□□□□ 0.23
VPS13D-205ENST00000473099 BTG4Q9NY30 223 aa16.51■□□□□ 0.23
VPS13D-205ENST00000473099 LRP6O75581 1613 aa16.51■□□□□ 0.23
VPS13D-205ENST00000473099 MS4A1P11836 297 aa16.5■□□□□ 0.23
VPS13D-205ENST00000473099 IRX6P78412 446 aaPredicted RBP16.5■□□□□ 0.23
VPS13D-205ENST00000473099 IL17REQ8NFR9 667 aa16.5■□□□□ 0.23
VPS13D-205ENST00000473099 STRN4Q9NRL3 753 aa16.5■□□□□ 0.23
VPS13D-205ENST00000473099 TSPYL4Q9UJ04 414 aa16.5■□□□□ 0.23
VPS13D-205ENST00000473099 KIF16BQ96L93 1317 aa16.49■□□□□ 0.23
VPS13D-205ENST00000473099 IL2RBP14784 551 aa16.49■□□□□ 0.23
VPS13D-205ENST00000473099 BRPF1P55201 1214 aaPredicted RBP16.49■□□□□ 0.23
VPS13D-205ENST00000473099 TEFQ10587 303 aa16.49■□□□□ 0.23
VPS13D-205ENST00000473099 PDE3AQ14432 1141 aa16.49■□□□□ 0.23
VPS13D-205ENST00000473099 IFNL2Q8IZJ0 200 aa16.49■□□□□ 0.23
VPS13D-205ENST00000473099 PPP4R2Q9NY27 417 aa16.49■□□□□ 0.23
VPS13D-205ENST00000473099 MRC1P22897 1456 aa16.48■□□□□ 0.23
VPS13D-205ENST00000473099 PCDH11XQ9BZA7 1347 aa16.48■□□□□ 0.23
VPS13D-205ENST00000473099 PCDH11YQ9BZA8 1340 aa16.48■□□□□ 0.23
VPS13D-205ENST00000473099 RNMTO43148 476 aaKnown RBP16.48■□□□□ 0.23
VPS13D-205ENST00000473099 BCAR3O75815 825 aa16.48■□□□□ 0.23
VPS13D-205ENST00000473099 CANXP27824 592 aaKnown RBP16.48■□□□□ 0.23
VPS13D-205ENST00000473099 TWISTNBQ3B726 338 aaPredicted RBP16.48■□□□□ 0.23
VPS13D-205ENST00000473099 LARP1Q6PKG0 1096 aaKnown RBP16.48■□□□□ 0.23
VPS13D-205ENST00000473099 POTEAQ6S8J7 498 aa16.48■□□□□ 0.23
VPS13D-205ENST00000473099 CHMP4AQ9BY43 222 aa16.48■□□□□ 0.23
VPS13D-205ENST00000473099 SLIT2O94813 1529 aa16.47■□□□□ 0.23
VPS13D-205ENST00000473099 VAMP4O75379 141 aa16.47■□□□□ 0.23
VPS13D-205ENST00000473099 PHKG2P15735 406 aa16.47■□□□□ 0.23
VPS13D-205ENST00000473099 SMC4Q9NTJ3 1288 aa16.47■□□□□ 0.23
VPS13D-205ENST00000473099 KAT6BQ8WYB5 2073 aa16.46■□□□□ 0.23
VPS13D-205ENST00000473099 IPO8O15397 1037 aaKnown RBP16.46■□□□□ 0.23
VPS13D-205ENST00000473099 ZCRB1Q8TBF4 217 aaKnown RBP16.46■□□□□ 0.23
VPS13D-205ENST00000473099 ITGB4P16144 1822 aa16.45■□□□□ 0.22
VPS13D-205ENST00000473099 PLIN1O60240 522 aa16.45■□□□□ 0.22
VPS13D-205ENST00000473099 SSH1Q8WYL5 1049 aa16.45■□□□□ 0.22
VPS13D-205ENST00000473099 DCAF5Q96JK2 942 aa16.45■□□□□ 0.22
VPS13D-205ENST00000473099 CDCA7Q9BWT1 371 aaPredicted RBP16.45■□□□□ 0.22
VPS13D-205ENST00000473099 THRAP3Q9Y2W1 955 aaKnown RBP16.45■□□□□ 0.22
VPS13D-205ENST00000473099 DISP2A7MBM2 1401 aa16.45■□□□□ 0.22
VPS13D-205ENST00000473099 ADAMTS2O95450 1211 aa16.44■□□□□ 0.22
VPS13D-205ENST00000473099 ZKSCAN2Q63HK3 967 aa16.44■□□□□ 0.22
VPS13D-205ENST00000473099 MPRIPQ6WCQ1 1025 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms