RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 NBPF6Q5VWK0 638 aa27.46■■□□□ 1.99
COL9A3-210ENST00000472880 NBPF4Q96M43 638 aa27.46■■□□□ 1.99
COL9A3-210ENST00000472880 INSRP06213 1382 aa27.46■■□□□ 1.99
COL9A3-210ENST00000472880 KIF24Q5T7B8 1368 aa27.46■■□□□ 1.99
COL9A3-210ENST00000472880 USHBP1Q8N6Y0 703 aa27.45■■□□□ 1.98
COL9A3-210ENST00000472880 CGNL1Q0VF96 1302 aa27.44■■□□□ 1.98
COL9A3-210ENST00000472880 PTGER2P43116 358 aa27.44■■□□□ 1.98
COL9A3-210ENST00000472880 RAPGEF4Q8WZA2 1011 aa27.44■■□□□ 1.98
COL9A3-210ENST00000472880 MTFR1LQ9H019 292 aa27.44■■□□□ 1.98
COL9A3-210ENST00000472880 CARD14Q9BXL6 1004 aa27.43■■□□□ 1.98
COL9A3-210ENST00000472880 LRRC4BQ9NT99 713 aa27.43■■□□□ 1.98
COL9A3-210ENST00000472880 PRIM1P49642 420 aaKnown RBP27.42■■□□□ 1.98
COL9A3-210ENST00000472880 ZNF827Q17R98 1081 aa27.42■■□□□ 1.98
COL9A3-210ENST00000472880 HSP90AB2PQ58FF8 381 aa27.42■■□□□ 1.98
COL9A3-210ENST00000472880 SLC27A3Q5K4L6 730 aa27.42■■□□□ 1.98
COL9A3-210ENST00000472880 NSD2O96028 1365 aa27.4■■□□□ 1.98
COL9A3-210ENST00000472880 TATP17735 454 aaPredicted RBP27.4■■□□□ 1.98
COL9A3-210ENST00000472880 LY75O60449 1722 aa27.38■■□□□ 1.97
COL9A3-210ENST00000472880 QSER1Q2KHR3 1735 aa27.38■■□□□ 1.97
COL9A3-210ENST00000472880 POLR3GLQ9BT43 218 aa27.37■■□□□ 1.97
COL9A3-210ENST00000472880 ANKRD26Q9UPS8 1709 aa27.37■■□□□ 1.97
COL9A3-210ENST00000472880 EMILIN1Q9Y6C2 1016 aa27.37■■□□□ 1.97
COL9A3-210ENST00000472880 PCDH11XQ9BZA7 1347 aa27.36■■□□□ 1.97
COL9A3-210ENST00000472880 PCDH11YQ9BZA8 1340 aa27.36■■□□□ 1.97
COL9A3-210ENST00000472880 YY1P25490 414 aa27.35■■□□□ 1.97
COL9A3-210ENST00000472880 AKT1S1Q96B36 256 aa27.35■■□□□ 1.97
COL9A3-210ENST00000472880 SGIP1Q9BQI5 828 aa27.34■■□□□ 1.97
COL9A3-210ENST00000472880 FHDC1Q9C0D6 1143 aaPredicted RBP27.34■■□□□ 1.97
COL9A3-210ENST00000472880 PPM1GO15355 546 aaPredicted RBP27.33■■□□□ 1.97
COL9A3-210ENST00000472880 KCNQ4P56696 695 aa27.32■■□□□ 1.96
COL9A3-210ENST00000472880 TUBGCP6Q96RT7 1819 aa27.32■■□□□ 1.96
COL9A3-210ENST00000472880 TFCP2L1Q9NZI6 479 aa27.31■■□□□ 1.96
COL9A3-210ENST00000472880 CCNL1Q9UK58 526 aaPredicted RBP27.31■■□□□ 1.96
COL9A3-210ENST00000472880 PKD1L3Q7Z443 1732 aa27.3■■□□□ 1.96
COL9A3-210ENST00000472880 ARXQ96QS3 562 aa27.3■■□□□ 1.96
COL9A3-210ENST00000472880 SYT17Q9BSW7 474 aa27.3■■□□□ 1.96
COL9A3-210ENST00000472880 EIF4G2P78344 907 aaKnown RBP eCLIP27.29■■□□□ 1.96
COL9A3-210ENST00000472880 SLC16A10Q8TF71 515 aa27.29■■□□□ 1.96
COL9A3-210ENST00000472880 PNPLA7Q6ZV29 1317 aa27.29■■□□□ 1.96
COL9A3-210ENST00000472880 MAP2P11137 1827 aaKnown RBP27.28■■□□□ 1.96
COL9A3-210ENST00000472880 NCAPD2Q15021 1401 aa27.28■■□□□ 1.96
COL9A3-210ENST00000472880 CCER1Q8TC90 406 aaPredicted RBP27.27■■□□□ 1.96
COL9A3-210ENST00000472880 WASHC2AQ641Q2 1341 aa27.26■■□□□ 1.95
COL9A3-210ENST00000472880 TOGARAM1Q9Y4F4 1720 aa27.25■■□□□ 1.95
COL9A3-210ENST00000472880 CYP27B1O15528 508 aa27.25■■□□□ 1.95
COL9A3-210ENST00000472880 HSPA5P11021 654 aaKnown RBP27.25■■□□□ 1.95
COL9A3-210ENST00000472880 MAP3K5Q99683 1374 aa27.24■■□□□ 1.95
COL9A3-210ENST00000472880 POLD1P28340 1107 aa27.24■■□□□ 1.95
COL9A3-210ENST00000472880 C5P01031 1676 aa27.24■■□□□ 1.95
COL9A3-210ENST00000472880 COL24A1Q17RW2 1714 aa27.23■■□□□ 1.95
COL9A3-210ENST00000472880 MPRIPQ6WCQ1 1025 aa27.22■■□□□ 1.95
COL9A3-210ENST00000472880 POLKQ9UBT6 870 aa27.22■■□□□ 1.95
COL9A3-210ENST00000472880 SPG7Q9UQ90 795 aa27.22■■□□□ 1.95
COL9A3-210ENST00000472880 PALLDQ8WX93 1383 aa27.22■■□□□ 1.95
COL9A3-210ENST00000472880 TNNT2P45379 298 aaPredicted RBP27.21■■□□□ 1.95
COL9A3-210ENST00000472880 ITGB4P16144 1822 aa27.2■■□□□ 1.95
COL9A3-210ENST00000472880 EYA1Q99502 592 aa27.2■■□□□ 1.94
COL9A3-210ENST00000472880 HMGB2P26583 209 aaKnown RBP27.19■■□□□ 1.94
COL9A3-210ENST00000472880 KLHL34Q8N239 644 aa27.19■■□□□ 1.94
COL9A3-210ENST00000472880 MSH5O43196 834 aa27.18■■□□□ 1.94
COL9A3-210ENST00000472880 PANK3Q9H999 370 aa27.17■■□□□ 1.94
COL9A3-210ENST00000472880 TAF1LQ8IZX4 1826 aa27.16■■□□□ 1.94
COL9A3-210ENST00000472880 SMARCC1Q92922 1105 aaPredicted RBP27.16■■□□□ 1.94
COL9A3-210ENST00000472880 EIF4A2Q14240 407 aaKnown RBP27.15■■□□□ 1.94
COL9A3-210ENST00000472880 NKX1-1Q15270 411 aaPredicted RBP27.15■■□□□ 1.94
COL9A3-210ENST00000472880 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.15■■□□□ 1.941e-6■□□□□ 9.8
COL9A3-210ENST00000472880 COL23A1Q86Y22 540 aaPredicted RBP27.13■■□□□ 1.93
COL9A3-210ENST00000472880 C4BP0C0L5 1744 aa27.13■■□□□ 1.93
COL9A3-210ENST00000472880 PLEKHG2Q9H7P9 1386 aa27.11■■□□□ 1.93
COL9A3-210ENST00000472880 PIGBQ92521 554 aa27.11■■□□□ 1.93
COL9A3-210ENST00000472880 IFNL2Q8IZJ0 200 aa27.1■■□□□ 1.93
COL9A3-210ENST00000472880 TMOD3Q9NYL9 352 aa27.1■■□□□ 1.93
COL9A3-210ENST00000472880 PHKG2P15735 406 aa27.09■■□□□ 1.93
COL9A3-210ENST00000472880 FLAD1Q8NFF5 587 aa27.09■■□□□ 1.93
COL9A3-210ENST00000472880 IGSF1Q8N6C5 1336 aa27.09■■□□□ 1.93
COL9A3-210ENST00000472880 GPR162Q16538 588 aa27.08■■□□□ 1.93
COL9A3-210ENST00000472880 AK7Q96M32 723 aa27.08■■□□□ 1.93
COL9A3-210ENST00000472880 CHD4Q14839 1912 aa27.08■■□□□ 1.93
COL9A3-210ENST00000472880 MSL1Q68DK7 614 aa27.07■■□□□ 1.92
COL9A3-210ENST00000472880 MORC1Q86VD1 984 aa27.07■■□□□ 1.92
COL9A3-210ENST00000472880 PELP1Q8IZL8 1130 aaKnown RBP27.04■■□□□ 1.92
COL9A3-210ENST00000472880 KNSTRNQ9Y448 316 aa27.04■■□□□ 1.92
COL9A3-210ENST00000472880 LOC102724428A0A0B4J2F2 783 aa27.03■■□□□ 1.92
COL9A3-210ENST00000472880 SIK1P57059 783 aa27.03■■□□□ 1.92
COL9A3-210ENST00000472880 UBR3Q6ZT12 1888 aa27.03■■□□□ 1.92
COL9A3-210ENST00000472880 NLGN2Q8NFZ4 835 aa27.03■■□□□ 1.92
COL9A3-210ENST00000472880 ASAP1Q9ULH1 1129 aa27.01■■□□□ 1.91
COL9A3-210ENST00000472880 PHF14O94880 888 aa27■■□□□ 1.91
COL9A3-210ENST00000472880 ZNF784Q8NCA9 323 aaPredicted RBP27■■□□□ 1.91
COL9A3-210ENST00000472880 HSP90AB1P08238 724 aaKnown RBP26.99■■□□□ 1.91
COL9A3-210ENST00000472880 PLEKHO1Q53GL0 409 aaPredicted RBP26.99■■□□□ 1.91
COL9A3-210ENST00000472880 LINC00116Q8NCU8 138 aa26.99■■□□□ 1.91
COL9A3-210ENST00000472880 UTRNP46939 3433 aa26.99■■□□□ 1.91
COL9A3-210ENST00000472880 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.97■■□□□ 1.91
COL9A3-210ENST00000472880 SSFA2P28290 1259 aa26.97■■□□□ 1.91
COL9A3-210ENST00000472880 ATP6V1AP38606 617 aa26.97■■□□□ 1.91
COL9A3-210ENST00000472880 ZNF530Q6P9A1 599 aaPredicted RBP26.97■■□□□ 1.91
COL9A3-210ENST00000472880 AMIGO3Q86WK7 504 aa26.97■■□□□ 1.91
COL9A3-210ENST00000472880 ATG3Q9NT62 314 aa26.97■■□□□ 1.91
COL9A3-210ENST00000472880 AMOTQ4VCS5 1084 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms