RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 BTBD11A6QL63 1104 aa17.04■□□□□ 0.32
CCDC88A-211ENST00000471947 ALDH1L2Q3SY69 923 aa17.03■□□□□ 0.32
CCDC88A-211ENST00000471947 LARP6Q9BRS8 491 aaKnown RBP17.03■□□□□ 0.32
CCDC88A-211ENST00000471947 LRRFIP2Q9Y608 721 aaKnown RBP17.03■□□□□ 0.32
CCDC88A-211ENST00000471947 FLIIQ13045 1269 aa17.03■□□□□ 0.32
CCDC88A-211ENST00000471947 CHMP4BQ9H444 224 aaKnown RBP17.02■□□□□ 0.32
CCDC88A-211ENST00000471947 CPS1P31327 1500 aa17.02■□□□□ 0.32
CCDC88A-211ENST00000471947 TAF7Q15545 349 aaPredicted RBP17.02■□□□□ 0.31
CCDC88A-211ENST00000471947 PRAMEF22A3QJZ6 481 aa17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 PTCD1O75127 700 aaKnown RBP17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 UBTFL1P0CB47 393 aaPredicted RBP17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 CCDC85AQ96PX6 553 aaPredicted RBP17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 IL17REQ8NFR9 667 aa17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 ARHGEF40Q8TER5 1519 aa17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 GCP02774 474 aa17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 CT47B1P0C2W7 299 aaPredicted RBP17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 CCDC30Q5VVM6 783 aa17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 LAMC1P11047 1609 aa17.01■□□□□ 0.31
CCDC88A-211ENST00000471947 PLEKHG3A1L390 1219 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 HMMRO75330 724 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 IL27Q8NEV9 243 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 ANO2Q9NQ90 1003 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 DIP2BQ9P265 1576 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 ANKRD24Q8TF21 1146 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 CHPF2Q9P2E5 772 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 MYOM1P52179 1685 aa17■□□□□ 0.31
CCDC88A-211ENST00000471947 PI4KAP2A4QPH2 592 aa16.99■□□□□ 0.31
CCDC88A-211ENST00000471947 SIRT2Q8IXJ6 389 aa16.99■□□□□ 0.31
CCDC88A-211ENST00000471947 PI4KAP1Q8N8J0 262 aa16.99■□□□□ 0.31
CCDC88A-211ENST00000471947 BRPF3Q9ULD4 1205 aa16.99■□□□□ 0.31
CCDC88A-211ENST00000471947 IL16Q14005 1332 aa16.99■□□□□ 0.31
CCDC88A-211ENST00000471947 CASC1Q6TDU7 716 aa16.99■□□□□ 0.31
CCDC88A-211ENST00000471947 CD163L1Q9NR16 1453 aa16.99■□□□□ 0.31
CCDC88A-211ENST00000471947 TBC1D9Q6ZT07 1266 aa16.98■□□□□ 0.31
CCDC88A-211ENST00000471947 KCNJ4P48050 445 aa16.98■□□□□ 0.31
CCDC88A-211ENST00000471947 PPLO60437 1756 aa16.98■□□□□ 0.31
CCDC88A-211ENST00000471947 SRGAP3O43295 1099 aa16.97■□□□□ 0.31
CCDC88A-211ENST00000471947 CHL1O00533 1208 aa16.97■□□□□ 0.31
CCDC88A-211ENST00000471947 EVA1CP58658 441 aa16.97■□□□□ 0.31
CCDC88A-211ENST00000471947 GNAI2P04899 355 aa16.97■□□□□ 0.31
CCDC88A-211ENST00000471947 NUCB1Q02818 461 aa16.97■□□□□ 0.31
CCDC88A-211ENST00000471947 ZFYVE9O95405 1425 aa16.96■□□□□ 0.31
CCDC88A-211ENST00000471947 FAM177BA6PVY3 158 aa16.96■□□□□ 0.31
CCDC88A-211ENST00000471947 PLEKHO1Q53GL0 409 aaPredicted RBP16.96■□□□□ 0.31
CCDC88A-211ENST00000471947 RIC3Q7Z5B4 369 aa16.96■□□□□ 0.31
CCDC88A-211ENST00000471947 FLT4P35916 1363 aa16.96■□□□□ 0.31
CCDC88A-211ENST00000471947 MSH6P52701 1360 aa16.96■□□□□ 0.31
CCDC88A-211ENST00000471947 PREX1Q8TCU6 1659 aa16.96■□□□□ 0.3
CCDC88A-211ENST00000471947 PTPRUQ92729 1446 aa16.95■□□□□ 0.3
CCDC88A-211ENST00000471947 CWF19L2Q2TBE0 894 aaKnown RBP16.95■□□□□ 0.3
CCDC88A-211ENST00000471947 SMC5Q8IY18 1101 aa16.95■□□□□ 0.3
CCDC88A-211ENST00000471947 PRDM11Q9NQV5 511 aa16.95■□□□□ 0.3
CCDC88A-211ENST00000471947 HDAC1Q13547 482 aaPredicted RBP16.95■□□□□ 0.3
CCDC88A-211ENST00000471947 TOM1L2Q6ZVM7 507 aa16.95■□□□□ 0.3
CCDC88A-211ENST00000471947 SETBP1Q9Y6X0 1596 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 TMEM131LA2VDJ0 1609 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 GCC1Q96CN9 775 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 PNMA6EA0A0J9YXQ4 647 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 GSE1Q14687 1217 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 TBC1D32Q96NH3 1257 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 NAP1L2Q9ULW6 460 aaPredicted RBP16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 RICTORQ6R327 1708 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 ATP5J2-PTCD1G3V325 749 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 TTC5Q8N0Z6 440 aa16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 PA2G4Q9UQ80 394 aaKnown RBP16.94■□□□□ 0.3
CCDC88A-211ENST00000471947 USP6P35125 1406 aa16.93■□□□□ 0.3
CCDC88A-211ENST00000471947 UPF3BQ9BZI7 483 aaKnown RBP16.93■□□□□ 0.3
CCDC88A-211ENST00000471947 AXIN2Q9Y2T1 843 aa16.93■□□□□ 0.3
CCDC88A-211ENST00000471947 ADAMTS13Q76LX8 1427 aa16.93■□□□□ 0.3
CCDC88A-211ENST00000471947 CEP85Q6P2H3 762 aa16.93■□□□□ 0.3
CCDC88A-211ENST00000471947 NFATC2IPQ8NCF5 419 aa16.93■□□□□ 0.3
CCDC88A-211ENST00000471947 SRCIN1Q9C0H9 1055 aa16.93■□□□□ 0.3
CCDC88A-211ENST00000471947 CDC45O75419 566 aa16.92■□□□□ 0.3
CCDC88A-211ENST00000471947 USP19O94966 1318 aa16.92■□□□□ 0.3
CCDC88A-211ENST00000471947 KLHDC4Q8TBB5 520 aa16.92■□□□□ 0.3
CCDC88A-211ENST00000471947 LRRC7Q96NW7 1537 aa16.92■□□□□ 0.3
CCDC88A-211ENST00000471947 PLEKHG1Q9ULL1 1385 aa16.91■□□□□ 0.3
CCDC88A-211ENST00000471947 ZC3H13Q5T200 1668 aaKnown RBP16.91■□□□□ 0.3
CCDC88A-211ENST00000471947 TTC21AQ8NDW8 1320 aa16.91■□□□□ 0.3
CCDC88A-211ENST00000471947 FAM135BQ49AJ0 1406 aa16.9■□□□□ 0.3
CCDC88A-211ENST00000471947 NBPF7P0C2Y1 421 aaPredicted RBP16.9■□□□□ 0.3
CCDC88A-211ENST00000471947 SDSP20132 328 aa16.9■□□□□ 0.3
CCDC88A-211ENST00000471947 PROSER3Q2NL68 480 aa16.9■□□□□ 0.3
CCDC88A-211ENST00000471947 MYO3AQ8NEV4 1616 aa16.9■□□□□ 0.3
CCDC88A-211ENST00000471947 ZNF853P0CG23 659 aa16.9■□□□□ 0.3
CCDC88A-211ENST00000471947 PPP1R42Q7Z4L9 355 aa16.9■□□□□ 0.3
CCDC88A-211ENST00000471947 ARHGEF28Q8N1W1 1705 aaKnown RBP16.89■□□□□ 0.29
CCDC88A-211ENST00000471947 EIF5BO60841 1220 aaKnown RBP16.89■□□□□ 0.29
CCDC88A-211ENST00000471947 CHAMP1Q96JM3 812 aa16.89■□□□□ 0.29
CCDC88A-211ENST00000471947 NLRP1Q9C000 1473 aa16.89■□□□□ 0.29
CCDC88A-211ENST00000471947 PNPLA6Q8IY17 1366 aa16.89■□□□□ 0.29
CCDC88A-211ENST00000471947 NEK4P51957 841 aa16.88■□□□□ 0.29
CCDC88A-211ENST00000471947 PLEKHM2Q8IWE5 1019 aa16.88■□□□□ 0.29
CCDC88A-211ENST00000471947 MAP3K2Q9Y2U5 619 aa16.88■□□□□ 0.29
CCDC88A-211ENST00000471947 LRRCC1Q9C099 1032 aa16.88■□□□□ 0.29
CCDC88A-211ENST00000471947 CCT4P50991 539 aaKnown RBP16.88■□□□□ 0.29
CCDC88A-211ENST00000471947 NUTM2BA6NNL0 878 aaPredicted RBP16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 NUTM2EB1AL46 878 aaPredicted RBP16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 TATP17735 454 aaPredicted RBP16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 CPSF1Q10570 1443 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms