RNA–Protein interactions for RNA: ENST00000470837.1

CCM2-204, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-204ENST00000470837 PLEKHG2Q9H7P9 1386 aa12.7□□□□□ -0.38
CCM2-204ENST00000470837 IL16Q14005 1332 aa12.7□□□□□ -0.38
CCM2-204ENST00000470837 AKAP4Q5JQC9 854 aa12.7□□□□□ -0.38
CCM2-204ENST00000470837 PHF23Q9BUL5 403 aaPredicted RBP12.7□□□□□ -0.38
CCM2-204ENST00000470837 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCM2-204ENST00000470837 TRIM35Q9UPQ4 493 aa12.7□□□□□ -0.38
CCM2-204ENST00000470837 LAS1LQ9Y4W2 734 aaKnown RBP12.7□□□□□ -0.38
CCM2-204ENST00000470837 NCAPD2Q15021 1401 aa12.7□□□□□ -0.38
CCM2-204ENST00000470837 MAP3K5Q99683 1374 aa12.69□□□□□ -0.38
CCM2-204ENST00000470837 SLFN5Q08AF3 891 aa12.69□□□□□ -0.38
CCM2-204ENST00000470837 UNC5CLQ8IV45 518 aa12.69□□□□□ -0.38
CCM2-204ENST00000470837 FBXO41Q8TF61 875 aa12.69□□□□□ -0.38
CCM2-204ENST00000470837 CDCA7LQ96GN5 454 aa12.69□□□□□ -0.38
CCM2-204ENST00000470837 FAM208AQ9UK61 1670 aaKnown RBP12.69□□□□□ -0.38
CCM2-204ENST00000470837 COL18A1P39060 1754 aa12.69□□□□□ -0.38
CCM2-204ENST00000470837 LMO7Q8WWI1 1683 aa12.68□□□□□ -0.38
CCM2-204ENST00000470837 HSP90AB1P08238 724 aaKnown RBP12.68□□□□□ -0.38
CCM2-204ENST00000470837 GNAI1P63096 354 aa12.68□□□□□ -0.38
CCM2-204ENST00000470837 CDCA7Q9BWT1 371 aaPredicted RBP12.68□□□□□ -0.38
CCM2-204ENST00000470837 THRAP3Q9Y2W1 955 aaKnown RBP12.68□□□□□ -0.38
CCM2-204ENST00000470837 MCM10Q7L590 875 aa12.67□□□□□ -0.38
CCM2-204ENST00000470837 IFNL2Q8IZJ0 200 aa12.67□□□□□ -0.38
CCM2-204ENST00000470837 ZCRB1Q8TBF4 217 aaKnown RBP12.67□□□□□ -0.38
CCM2-204ENST00000470837 IFT57Q9NWB7 429 aa12.67□□□□□ -0.38
CCM2-204ENST00000470837 USP21Q9UK80 565 aa12.67□□□□□ -0.38
CCM2-204ENST00000470837 PCDH11XQ9BZA7 1347 aa12.66□□□□□ -0.38
CCM2-204ENST00000470837 PCDH11YQ9BZA8 1340 aa12.66□□□□□ -0.38
CCM2-204ENST00000470837 TEFQ10587 303 aa12.66□□□□□ -0.38
CCM2-204ENST00000470837 DCTN1Q14203 1278 aa12.66□□□□□ -0.38
CCM2-204ENST00000470837 THUMPD2Q9BTF0 503 aaKnown RBP12.66□□□□□ -0.38
CCM2-204ENST00000470837 DUSP27Q5VZP5 1158 aa12.65□□□□□ -0.38
CCM2-204ENST00000470837 FNBP4Q8N3X1 1017 aaPredicted RBP12.65□□□□□ -0.38
CCM2-204ENST00000470837 CFAP44Q96MT7 982 aa12.65□□□□□ -0.38
CCM2-204ENST00000470837 OVOS2A0A0G2JMS6 1433 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 MEGF6O75095 1541 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 SLIT2O94813 1529 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 A0A0G2JS52 829 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 EXOC5O00471 708 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 NEFLP07196 543 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 MYT1Q01538 1121 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 VPS72Q15906 364 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 RGPD5Q99666 1765 aa12.64□□□□□ -0.39
CCM2-204ENST00000470837 AFF2P51816 1311 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 SPATA31A1Q5TZJ5 1347 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 SPATA31A5Q5VU36 1347 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 SPATA31A7Q8IWB4 1347 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 PHKG2P15735 406 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 TAF7Q15545 349 aaPredicted RBP12.63□□□□□ -0.39
CCM2-204ENST00000470837 MPRIPQ6WCQ1 1025 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 DDX54Q8TDD1 881 aaKnown RBP12.63□□□□□ -0.39
CCM2-204ENST00000470837 DCAF5Q96JK2 942 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 SPINK5Q9NQ38 1064 aaPredicted RBP12.63□□□□□ -0.39
CCM2-204ENST00000470837 TSPYL4Q9UJ04 414 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 RCAN3Q9UKA8 241 aa12.63□□□□□ -0.39
CCM2-204ENST00000470837 FANCIQ9NVI1 1328 aa12.62□□□□□ -0.39
CCM2-204ENST00000470837 LRP6O75581 1613 aa12.62□□□□□ -0.39
CCM2-204ENST00000470837 CT47B1P0C2W7 299 aaPredicted RBP12.62□□□□□ -0.39
CCM2-204ENST00000470837 BARGINQ6ZT62 677 aa12.62□□□□□ -0.39
CCM2-204ENST00000470837 TRMT2AQ8IZ69 625 aaKnown RBP12.62□□□□□ -0.39
CCM2-204ENST00000470837 TSR2Q969E8 191 aaKnown RBP12.62□□□□□ -0.39
CCM2-204ENST00000470837 BABAM1Q9NWV8 329 aa12.62□□□□□ -0.39
CCM2-204ENST00000470837 TRPC5Q9UL62 973 aaPredicted RBP12.62□□□□□ -0.39
CCM2-204ENST00000470837 RNMTO43148 476 aaKnown RBP12.61□□□□□ -0.39
CCM2-204ENST00000470837 DDB1Q16531 1140 aa12.61□□□□□ -0.39
CCM2-204ENST00000470837 IL17REQ8NFR9 667 aa12.61□□□□□ -0.39
CCM2-204ENST00000470837 PLCH1Q4KWH8 1693 aa12.61□□□□□ -0.39
CCM2-204ENST00000470837 CABP4P57796 275 aa12.6□□□□□ -0.39
CCM2-204ENST00000470837 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.6□□□□□ -0.39
CCM2-204ENST00000470837 MBIPQ9NS73 344 aa12.6□□□□□ -0.39
CCM2-204ENST00000470837 NWD2Q9ULI1 1742 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 BCL9LQ86UU0 1499 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 RGPD2P0DJD1 1756 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 BTBD11A6QL63 1104 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 CHL1O00533 1208 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 CYP27B1O15528 508 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 ZNF853P0CG23 659 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 EXOSC9Q06265 439 aaKnown RBP12.59□□□□□ -0.39
CCM2-204ENST00000470837 FAM98CQ17RN3 349 aaKnown RBP12.59□□□□□ -0.39
CCM2-204ENST00000470837 ZNF772Q68DY9 489 aaPredicted RBP12.59□□□□□ -0.39
CCM2-204ENST00000470837 CHMP4AQ9BY43 222 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 LGR6Q9HBX8 967 aa12.59□□□□□ -0.39
CCM2-204ENST00000470837 SUPT16HQ9Y5B9 1047 aaKnown RBP12.59□□□□□ -0.39
CCM2-204ENST00000470837 CEMIPQ8WUJ3 1361 aa12.58□□□□□ -0.4
CCM2-204ENST00000470837 ZNF428Q96B54 188 aa12.58□□□□□ -0.4
CCM2-204ENST00000470837 GJD4Q96KN9 370 aaPredicted RBP12.58□□□□□ -0.4
CCM2-204ENST00000470837 PARP4Q9UKK3 1724 aaKnown RBP12.58□□□□□ -0.4
CCM2-204ENST00000470837 ERVV-2B6SEH9 535 aa12.57□□□□□ -0.4
CCM2-204ENST00000470837 CANXP27824 592 aaKnown RBP12.57□□□□□ -0.4
CCM2-204ENST00000470837 TTC5Q8N0Z6 440 aa12.57□□□□□ -0.4
CCM2-204ENST00000470837 QTRT2Q9H974 415 aaKnown RBP12.57□□□□□ -0.4
CCM2-204ENST00000470837 SLC52A2Q9HAB3 445 aa12.57□□□□□ -0.4
CCM2-204ENST00000470837 DISP2A7MBM2 1401 aa12.56□□□□□ -0.4
CCM2-204ENST00000470837 NKX1-1Q15270 411 aaPredicted RBP12.56□□□□□ -0.4
CCM2-204ENST00000470837 MIS18AQ9NYP9 233 aa12.56□□□□□ -0.4
CCM2-204ENST00000470837 TNS2Q63HR2 1409 aa12.55□□□□□ -0.4
CCM2-204ENST00000470837 NRAPQ86VF7 1730 aa12.55□□□□□ -0.4
CCM2-204ENST00000470837 TWISTNBQ3B726 338 aaPredicted RBP12.55□□□□□ -0.4
CCM2-204ENST00000470837 NFATC2IPQ8NCF5 419 aa12.55□□□□□ -0.4
CCM2-204ENST00000470837 TMOD3Q9NYL9 352 aa12.55□□□□□ -0.4
CCM2-204ENST00000470837 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms