RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 WDR63Q8IWG1 891 aa10.32□□□□□ -0.76
SMC4-212ENST00000470240 TRMT2AQ8IZ69 625 aaKnown RBP10.32□□□□□ -0.76
SMC4-212ENST00000470240 MYH16Q9H6N6 1097 aa10.32□□□□□ -0.76
SMC4-212ENST00000470240 YTHDC2Q9H6S0 1430 aaKnown RBP10.32□□□□□ -0.76
SMC4-212ENST00000470240 TSPOAP1O95153 1857 aa10.32□□□□□ -0.76
SMC4-212ENST00000470240 MED14O60244 1454 aa10.31□□□□□ -0.76
SMC4-212ENST00000470240 ABCC11Q96J66 1382 aa10.31□□□□□ -0.76
SMC4-212ENST00000470240 NEFMP07197 916 aa10.31□□□□□ -0.76
SMC4-212ENST00000470240 TNNT2P45379 298 aaPredicted RBP10.31□□□□□ -0.76
SMC4-212ENST00000470240 HDGFP51858 240 aaKnown RBP10.31□□□□□ -0.76
SMC4-212ENST00000470240 CCDC27Q2M243 656 aa10.31□□□□□ -0.76
SMC4-212ENST00000470240 ARHGEF1Q92888 912 aaKnown RBP10.31□□□□□ -0.76
SMC4-212ENST00000470240 DLC1Q96QB1 1528 aa10.31□□□□□ -0.76
SMC4-212ENST00000470240 IQSEC2Q5JU85 1478 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 ALKQ9UM73 1620 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 GRXCR2A6NFK2 248 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 PDE3AQ14432 1141 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 NUTM2DQ5VT03 806 aaPredicted RBP10.3□□□□□ -0.76
SMC4-212ENST00000470240 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.3□□□□□ -0.76
SMC4-212ENST00000470240 RBM33Q96EV2 1170 aaKnown RBP10.3□□□□□ -0.76
SMC4-212ENST00000470240 STK26Q9P289 416 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 KIF20BQ96Q89 1820 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 MAPK8IP3Q9UPT6 1336 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 PTPRMP28827 1452 aa10.3□□□□□ -0.76
SMC4-212ENST00000470240 TK2O00142 265 aa10.29□□□□□ -0.76
SMC4-212ENST00000470240 U2AF1L5P0DN76 240 aaPredicted RBP10.29□□□□□ -0.76
SMC4-212ENST00000470240 MTHFSP49914 203 aa10.29□□□□□ -0.76
SMC4-212ENST00000470240 U2AF1Q01081 240 aaKnown RBP eCLIP10.29□□□□□ -0.76
SMC4-212ENST00000470240 RTL5Q5HYW3 569 aaPredicted RBP10.29□□□□□ -0.76
SMC4-212ENST00000470240 WWC1Q8IX03 1113 aa10.29□□□□□ -0.76
SMC4-212ENST00000470240 SPATA31D1Q6ZQQ2 1576 aa10.29□□□□□ -0.76
SMC4-212ENST00000470240 ARHGEF40Q8TER5 1519 aa10.28□□□□□ -0.76
SMC4-212ENST00000470240 CT47B1P0C2W7 299 aaPredicted RBP10.28□□□□□ -0.76
SMC4-212ENST00000470240 SAFB2Q14151 953 aaKnown RBP eCLIP10.28□□□□□ -0.76
SMC4-212ENST00000470240 TCP11L2Q8N4U5 519 aa10.28□□□□□ -0.76
SMC4-212ENST00000470240 RNF166Q96A37 237 aaPredicted RBP10.28□□□□□ -0.76
SMC4-212ENST00000470240 BACH2Q9BYV9 841 aa10.28□□□□□ -0.76
SMC4-212ENST00000470240 DAXXQ9UER7 740 aaPredicted RBP10.28□□□□□ -0.76
SMC4-212ENST00000470240 MINK1Q8N4C8 1332 aaPredicted RBP10.28□□□□□ -0.76
SMC4-212ENST00000470240 A0A1W2PP64 1363 aa10.27□□□□□ -0.76
SMC4-212ENST00000470240 NPM2Q86SE8 214 aaKnown RBP10.27□□□□□ -0.77
SMC4-212ENST00000470240 PRAM1Q96QH2 718 aa10.27□□□□□ -0.77
SMC4-212ENST00000470240 KDM2BQ8NHM5 1336 aa10.27□□□□□ -0.77
SMC4-212ENST00000470240 ADGRB2O60241 1585 aa10.26□□□□□ -0.77
SMC4-212ENST00000470240 RIMS2Q9UQ26 1411 aa10.26□□□□□ -0.77
SMC4-212ENST00000470240 ATP7BP35670 1465 aa10.26□□□□□ -0.77
SMC4-212ENST00000470240 PPP1R3GB7ZBB8 358 aa10.26□□□□□ -0.77
SMC4-212ENST00000470240 MAP3K7O43318 606 aa10.26□□□□□ -0.77
SMC4-212ENST00000470240 U2SURPO15042 1029 aaKnown RBP10.25□□□□□ -0.77
SMC4-212ENST00000470240 EN1Q05925 392 aaPredicted RBP10.25□□□□□ -0.77
SMC4-212ENST00000470240 NEUROD2Q15784 382 aa10.25□□□□□ -0.77
SMC4-212ENST00000470240 C20orf194Q5TEA3 1177 aa10.25□□□□□ -0.77
SMC4-212ENST00000470240 PMFBP1Q8TBY8 1022 aa10.25□□□□□ -0.77
SMC4-212ENST00000470240 A2ML1A8K2U0 1454 aa10.24□□□□□ -0.77
SMC4-212ENST00000470240 FAM161AQ3B820 660 aa10.24□□□□□ -0.77
SMC4-212ENST00000470240 C6orf132Q5T0Z8 1188 aa10.24□□□□□ -0.77
SMC4-212ENST00000470240 VPS9D1Q9Y2B5 631 aa10.24□□□□□ -0.77
SMC4-212ENST00000470240 CALD1Q05682 793 aaKnown RBP10.23□□□□□ -0.77
SMC4-212ENST00000470240 FRAT1Q92837 279 aaPredicted RBP10.23□□□□□ -0.77
SMC4-212ENST00000470240 CLUAP1Q96AJ1 413 aa10.23□□□□□ -0.77
SMC4-212ENST00000470240 ZBED2Q9BTP6 218 aa10.23□□□□□ -0.77
SMC4-212ENST00000470240 CDK19Q9BWU1 502 aa10.23□□□□□ -0.77
SMC4-212ENST00000470240 KNDC1Q76NI1 1749 aa10.22□□□□□ -0.77
SMC4-212ENST00000470240 PPM1GO15355 546 aaPredicted RBP10.22□□□□□ -0.77
SMC4-212ENST00000470240 DIAPH1O60610 1272 aaKnown RBP10.22□□□□□ -0.77
SMC4-212ENST00000470240 BCAR3O75815 825 aa10.22□□□□□ -0.77
SMC4-212ENST00000470240 COL9A1P20849 921 aa10.22□□□□□ -0.77
SMC4-212ENST00000470240 FBXO31Q5XUX0 539 aaPredicted RBP10.22□□□□□ -0.77
SMC4-212ENST00000470240 FTSJ3Q8IY81 847 aaKnown RBP10.22□□□□□ -0.77
SMC4-212ENST00000470240 VSIG10Q8N0Z9 540 aa10.22□□□□□ -0.77
SMC4-212ENST00000470240 SLC4A5Q9BY07 1137 aa10.22□□□□□ -0.77
SMC4-212ENST00000470240 GGNBP2Q9H3C7 697 aa10.22□□□□□ -0.77
SMC4-212ENST00000470240 RRP7AQ9Y3A4 280 aaKnown RBP10.22□□□□□ -0.77
SMC4-212ENST00000470240 IL16Q14005 1332 aa10.22□□□□□ -0.77
SMC4-212ENST00000470240 RARSP54136 660 aaKnown RBP10.21□□□□□ -0.77
SMC4-212ENST00000470240 ZKSCAN2Q63HK3 967 aa10.21□□□□□ -0.77
SMC4-212ENST00000470240 SETD1AO15047 1707 aaKnown RBP10.2□□□□□ -0.78
SMC4-212ENST00000470240 HRO43593 1189 aa10.2□□□□□ -0.78
SMC4-212ENST00000470240 COL3A1P02461 1466 aaPredicted RBP10.2□□□□□ -0.78
SMC4-212ENST00000470240 ZMYM3Q14202 1370 aa10.2□□□□□ -0.78
SMC4-212ENST00000470240 TSR1Q2NL82 804 aaKnown RBP10.2□□□□□ -0.78
SMC4-212ENST00000470240 VIRMAQ69YN4 1812 aaKnown RBP10.2□□□□□ -0.78
SMC4-212ENST00000470240 CDC42BPGQ6DT37 1551 aa10.2□□□□□ -0.78
SMC4-212ENST00000470240 EDC4Q6P2E9 1401 aaKnown RBP10.2□□□□□ -0.78
SMC4-212ENST00000470240 CHMP4BQ9H444 224 aaKnown RBP10.2□□□□□ -0.78
SMC4-212ENST00000470240 RWDD1Q9H446 243 aaPredicted RBP10.2□□□□□ -0.78
SMC4-212ENST00000470240 ITSN1Q15811 1721 aa10.19□□□□□ -0.78
SMC4-212ENST00000470240 FAM135BQ49AJ0 1406 aa10.19□□□□□ -0.78
SMC4-212ENST00000470240 FYB1O15117 783 aa10.19□□□□□ -0.78
SMC4-212ENST00000470240 IPO8O15397 1037 aaKnown RBP10.19□□□□□ -0.78
SMC4-212ENST00000470240 TMPOP42166 694 aaKnown RBP10.19□□□□□ -0.78
SMC4-212ENST00000470240 RGS3P49796 1198 aa10.19□□□□□ -0.78
SMC4-212ENST00000470240 MLECQ14165 292 aa10.19□□□□□ -0.78
SMC4-212ENST00000470240 SIRT1Q96EB6 747 aa10.19□□□□□ -0.78
SMC4-212ENST00000470240 UPF2Q9HAU5 1272 aaKnown RBP10.19□□□□□ -0.78
SMC4-212ENST00000470240 COG6Q9Y2V7 657 aa10.19□□□□□ -0.78
SMC4-212ENST00000470240 CD163L1Q9NR16 1453 aa10.18□□□□□ -0.78
SMC4-212ENST00000470240 TNRQ92752 1358 aa10.18□□□□□ -0.78
SMC4-212ENST00000470240 KIF16BQ96L93 1317 aa10.18□□□□□ -0.78
SMC4-212ENST00000470240 FCHSD2O94868 740 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms