RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 YY1P25490 414 aa18.42■□□□□ 0.54
CPSF4-210ENST00000469897 CLSPNQ9HAW4 1339 aa18.42■□□□□ 0.54
CPSF4-210ENST00000469897 RGPD3A6NKT7 1758 aaPredicted RBP18.42■□□□□ 0.54
CPSF4-210ENST00000469897 RGPD4Q7Z3J3 1758 aa18.42■□□□□ 0.54
CPSF4-210ENST00000469897 INSRP06213 1382 aa18.42■□□□□ 0.54
CPSF4-210ENST00000469897 SGIP1Q9BQI5 828 aa18.41■□□□□ 0.54
CPSF4-210ENST00000469897 SYT17Q9BSW7 474 aa18.41■□□□□ 0.54
CPSF4-210ENST00000469897 FHDC1Q9C0D6 1143 aaPredicted RBP18.41■□□□□ 0.54
CPSF4-210ENST00000469897 CGNL1Q0VF96 1302 aa18.41■□□□□ 0.54
CPSF4-210ENST00000469897 NSD3Q9BZ95 1437 aa18.4■□□□□ 0.54
CPSF4-210ENST00000469897 MEGF6O75095 1541 aa18.4■□□□□ 0.54
CPSF4-210ENST00000469897 ARXQ96QS3 562 aa18.39■□□□□ 0.53
CPSF4-210ENST00000469897 TFCP2L1Q9NZI6 479 aa18.39■□□□□ 0.53
CPSF4-210ENST00000469897 SMG6Q86US8 1419 aaKnown RBP18.39■□□□□ 0.53
CPSF4-210ENST00000469897 NHSQ6T4R5 1651 aa18.38■□□□□ 0.53
CPSF4-210ENST00000469897 CCNL1Q9UK58 526 aaPredicted RBP18.38■□□□□ 0.53
CPSF4-210ENST00000469897 FLT4P35916 1363 aa18.38■□□□□ 0.53
CPSF4-210ENST00000469897 NSD2O96028 1365 aa18.37■□□□□ 0.53
CPSF4-210ENST00000469897 CYP27B1O15528 508 aa18.36■□□□□ 0.53
CPSF4-210ENST00000469897 TNNT2P45379 298 aaPredicted RBP18.36■□□□□ 0.53
CPSF4-210ENST00000469897 EIF4G2P78344 907 aaKnown RBP eCLIP18.36■□□□□ 0.53
CPSF4-210ENST00000469897 KIF24Q5T7B8 1368 aa18.36■□□□□ 0.53
CPSF4-210ENST00000469897 MPRIPQ6WCQ1 1025 aa18.36■□□□□ 0.53
CPSF4-210ENST00000469897 PNPLA7Q6ZV29 1317 aa18.36■□□□□ 0.53
CPSF4-210ENST00000469897 CCER1Q8TC90 406 aaPredicted RBP18.36■□□□□ 0.53
CPSF4-210ENST00000469897 CASZ1Q86V15 1759 aa18.35■□□□□ 0.53
CPSF4-210ENST00000469897 WASHC2AQ641Q2 1341 aa18.35■□□□□ 0.53
CPSF4-210ENST00000469897 HSPA5P11021 654 aaKnown RBP18.35■□□□□ 0.53
CPSF4-210ENST00000469897 SLC16A10Q8TF71 515 aa18.35■□□□□ 0.53
CPSF4-210ENST00000469897 POLKQ9UBT6 870 aa18.35■□□□□ 0.53
CPSF4-210ENST00000469897 PCDH11XQ9BZA7 1347 aa18.34■□□□□ 0.53
CPSF4-210ENST00000469897 PCDH11YQ9BZA8 1340 aa18.34■□□□□ 0.53
CPSF4-210ENST00000469897 EYA1Q99502 592 aa18.34■□□□□ 0.53
CPSF4-210ENST00000469897 FAM208AQ9UK61 1670 aaKnown RBP18.32■□□□□ 0.52
CPSF4-210ENST00000469897 MSH5O43196 834 aa18.32■□□□□ 0.52
CPSF4-210ENST00000469897 PANK3Q9H999 370 aa18.32■□□□□ 0.52
CPSF4-210ENST00000469897 POLD1P28340 1107 aa18.31■□□□□ 0.52
CPSF4-210ENST00000469897 KLHL34Q8N239 644 aa18.31■□□□□ 0.52
CPSF4-210ENST00000469897 SPG7Q9UQ90 795 aa18.31■□□□□ 0.52
CPSF4-210ENST00000469897 BTAF1O14981 1849 aa18.3■□□□□ 0.52
CPSF4-210ENST00000469897 COL23A1Q86Y22 540 aaPredicted RBP18.3■□□□□ 0.52
CPSF4-210ENST00000469897 PIGBQ92521 554 aa18.29■□□□□ 0.52
CPSF4-210ENST00000469897 PAPPAQ13219 1627 aa18.28■□□□□ 0.52
CPSF4-210ENST00000469897 EIF4A2Q14240 407 aaKnown RBP18.28■□□□□ 0.52
CPSF4-210ENST00000469897 NKX1-1Q15270 411 aaPredicted RBP18.28■□□□□ 0.52
CPSF4-210ENST00000469897 MYOM1P52179 1685 aa18.27■□□□□ 0.52
CPSF4-210ENST00000469897 SMARCC1Q92922 1105 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-210ENST00000469897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.26■□□□□ 0.51
CPSF4-210ENST00000469897 RGPD2P0DJD1 1756 aa18.26■□□□□ 0.51
CPSF4-210ENST00000469897 PALLDQ8WX93 1383 aa18.26■□□□□ 0.51
CPSF4-210ENST00000469897 GPR162Q16538 588 aa18.25■□□□□ 0.51
CPSF4-210ENST00000469897 PHKG2P15735 406 aa18.24■□□□□ 0.51
CPSF4-210ENST00000469897 MSL1Q68DK7 614 aa18.24■□□□□ 0.51
CPSF4-210ENST00000469897 IFNL2Q8IZJ0 200 aa18.24■□□□□ 0.51
CPSF4-210ENST00000469897 SMIM5Q71RC9 77 aa18.23■□□□□ 0.51
CPSF4-210ENST00000469897 MORC1Q86VD1 984 aa18.23■□□□□ 0.51
CPSF4-210ENST00000469897 PELP1Q8IZL8 1130 aaKnown RBP18.23■□□□□ 0.51
CPSF4-210ENST00000469897 MAP3K5Q99683 1374 aa18.22■□□□□ 0.51
CPSF4-210ENST00000469897 HMGB2P26583 209 aaKnown RBP18.22■□□□□ 0.51
CPSF4-210ENST00000469897 NLGN2Q8NFZ4 835 aa18.22■□□□□ 0.51
CPSF4-210ENST00000469897 TMOD3Q9NYL9 352 aa18.22■□□□□ 0.51
CPSF4-210ENST00000469897 ASAP1Q9ULH1 1129 aa18.22■□□□□ 0.51
CPSF4-210ENST00000469897 FLAD1Q8NFF5 587 aa18.21■□□□□ 0.51
CPSF4-210ENST00000469897 NCAPD2Q15021 1401 aa18.21■□□□□ 0.51
CPSF4-210ENST00000469897 DOT1LQ8TEK3 1739 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 KAT6BQ8WYB5 2073 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 LOC102724428A0A0B4J2F2 783 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 SIK1P57059 783 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 AMIGO3Q86WK7 504 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 ZNF784Q8NCA9 323 aaPredicted RBP18.2■□□□□ 0.5
CPSF4-210ENST00000469897 AK7Q96M32 723 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 KIF20BQ96Q89 1820 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 SHANK3Q9BYB0 1731 aa18.2■□□□□ 0.5
CPSF4-210ENST00000469897 KNSTRNQ9Y448 316 aa18.19■□□□□ 0.5
CPSF4-210ENST00000469897 PHF14O94880 888 aa18.18■□□□□ 0.5
CPSF4-210ENST00000469897 ATP6V1AP38606 617 aa18.18■□□□□ 0.5
CPSF4-210ENST00000469897 ATG3Q9NT62 314 aa18.18■□□□□ 0.5
CPSF4-210ENST00000469897 PLEKHO1Q53GL0 409 aaPredicted RBP18.17■□□□□ 0.5
CPSF4-210ENST00000469897 LINC00116Q8NCU8 138 aa18.17■□□□□ 0.5
CPSF4-210ENST00000469897 IGSF1Q8N6C5 1336 aa18.17■□□□□ 0.5
CPSF4-210ENST00000469897 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.16■□□□□ 0.5
CPSF4-210ENST00000469897 ITPK1Q13572 414 aa18.16■□□□□ 0.5
CPSF4-210ENST00000469897 ERVV-2B6SEH9 535 aa18.14■□□□□ 0.49
CPSF4-210ENST00000469897 AMOTQ4VCS5 1084 aa18.14■□□□□ 0.49
CPSF4-210ENST00000469897 AEBP1Q8IUX7 1158 aa18.14■□□□□ 0.49
CPSF4-210ENST00000469897 DCAF5Q96JK2 942 aa18.14■□□□□ 0.49
CPSF4-210ENST00000469897 LY75O60449 1722 aa18.14■□□□□ 0.49
CPSF4-210ENST00000469897 YBX3P16989 372 aaKnown RBP eCLIP18.13■□□□□ 0.495e-8■□□□□ 10.9
CPSF4-210ENST00000469897 SULT6B1Q6IMI4 303 aa18.13■□□□□ 0.49
CPSF4-210ENST00000469897 ZNF530Q6P9A1 599 aaPredicted RBP18.13■□□□□ 0.49
CPSF4-210ENST00000469897 RBM42Q9BTD8 480 aaKnown RBP18.13■□□□□ 0.49
CPSF4-210ENST00000469897 GNPATO15228 680 aa18.12■□□□□ 0.49
CPSF4-210ENST00000469897 HSP90AB1P08238 724 aaKnown RBP18.12■□□□□ 0.49
CPSF4-210ENST00000469897 SSFA2P28290 1259 aa18.12■□□□□ 0.49
CPSF4-210ENST00000469897 CABP4P57796 275 aa18.12■□□□□ 0.49
CPSF4-210ENST00000469897 AMER1Q5JTC6 1135 aaPredicted RBP18.12■□□□□ 0.49
CPSF4-210ENST00000469897 CD2APQ9Y5K6 639 aa18.12■□□□□ 0.49
CPSF4-210ENST00000469897 IL13P35225 146 aa18.11■□□□□ 0.49
CPSF4-210ENST00000469897 MTHFSP49914 203 aa18.11■□□□□ 0.49
CPSF4-210ENST00000469897 SLC4A9Q96Q91 983 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms