RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 NBPF4Q96M43 638 aa22.64■■□□□ 1.21
COL9A3-208ENST00000469802 EIF4G2P78344 907 aaKnown RBP eCLIP22.63■■□□□ 1.21
COL9A3-208ENST00000469802 HSP90AB2PQ58FF8 381 aa22.62■■□□□ 1.21
COL9A3-208ENST00000469802 TUBGCP6Q96RT7 1819 aa22.61■■□□□ 1.21
COL9A3-208ENST00000469802 CGNL1Q0VF96 1302 aa22.61■■□□□ 1.21
COL9A3-208ENST00000469802 HSPA5P11021 654 aaKnown RBP22.61■■□□□ 1.21
COL9A3-208ENST00000469802 DDX54Q8TDD1 881 aaKnown RBP22.61■■□□□ 1.21
COL9A3-208ENST00000469802 NSD2O96028 1365 aa22.61■■□□□ 1.21
COL9A3-208ENST00000469802 TOGARAM1Q9Y4F4 1720 aa22.6■■□□□ 1.21
COL9A3-208ENST00000469802 EMILIN1Q9Y6C2 1016 aa22.6■■□□□ 1.21
COL9A3-208ENST00000469802 USHBP1Q8N6Y0 703 aa22.59■■□□□ 1.21
COL9A3-208ENST00000469802 ZCRB1Q8TBF4 217 aaKnown RBP22.59■■□□□ 1.21
COL9A3-208ENST00000469802 SPON1Q9HCB6 807 aa22.59■■□□□ 1.21
COL9A3-208ENST00000469802 ITGB4P16144 1822 aa22.57■■□□□ 1.2
COL9A3-208ENST00000469802 SLC15A2Q16348 729 aa22.57■■□□□ 1.2
COL9A3-208ENST00000469802 PDGFDQ9GZP0 370 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-208ENST00000469802 STK32BQ9NY57 414 aa22.56■■□□□ 1.2
COL9A3-208ENST00000469802 COL24A1Q17RW2 1714 aa22.55■■□□□ 1.2
COL9A3-208ENST00000469802 RAPGEF4Q8WZA2 1011 aa22.54■■□□□ 1.2
COL9A3-208ENST00000469802 LRRC4BQ9NT99 713 aa22.54■■□□□ 1.2
COL9A3-208ENST00000469802 WASHC2AQ641Q2 1341 aa22.54■■□□□ 1.2
COL9A3-208ENST00000469802 POLR3GLQ9BT43 218 aa22.53■■□□□ 1.2
COL9A3-208ENST00000469802 TATP17735 454 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-208ENST00000469802 PCDH11XQ9BZA7 1347 aa22.52■■□□□ 1.2
COL9A3-208ENST00000469802 PCDH11YQ9BZA8 1340 aa22.52■■□□□ 1.2
COL9A3-208ENST00000469802 TAF1LQ8IZX4 1826 aa22.52■■□□□ 1.2
COL9A3-208ENST00000469802 C5P01031 1676 aa22.52■■□□□ 1.2
COL9A3-208ENST00000469802 PRIM1P49642 420 aaKnown RBP22.51■■□□□ 1.19
COL9A3-208ENST00000469802 SLC27A3Q5K4L6 730 aa22.51■■□□□ 1.19
COL9A3-208ENST00000469802 POLKQ9UBT6 870 aa22.51■■□□□ 1.19
COL9A3-208ENST00000469802 ZNF827Q17R98 1081 aa22.5■■□□□ 1.19
COL9A3-208ENST00000469802 PTGER2P43116 358 aa22.49■■□□□ 1.19
COL9A3-208ENST00000469802 SYTL4Q96C24 671 aaPredicted RBP22.49■■□□□ 1.19
COL9A3-208ENST00000469802 PANK3Q9H999 370 aa22.49■■□□□ 1.19
COL9A3-208ENST00000469802 PPM1GO15355 546 aaPredicted RBP22.48■■□□□ 1.19
COL9A3-208ENST00000469802 ZBTB7AO95365 584 aa22.48■■□□□ 1.19
COL9A3-208ENST00000469802 AKT1S1Q96B36 256 aa22.47■■□□□ 1.19
COL9A3-208ENST00000469802 PPP1R1BQ9UD71 204 aaPredicted RBP22.47■■□□□ 1.19
COL9A3-208ENST00000469802 CYP27B1O15528 508 aa22.46■■□□□ 1.19
COL9A3-208ENST00000469802 SGIP1Q9BQI5 828 aa22.46■■□□□ 1.19
COL9A3-208ENST00000469802 MTFR1LQ9H019 292 aa22.46■■□□□ 1.19
COL9A3-208ENST00000469802 PLEKHG2Q9H7P9 1386 aa22.46■■□□□ 1.19
COL9A3-208ENST00000469802 EYA1Q99502 592 aa22.45■■□□□ 1.18
COL9A3-208ENST00000469802 EIF4A2Q14240 407 aaKnown RBP22.42■■□□□ 1.18
COL9A3-208ENST00000469802 ATF5Q9Y2D1 282 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-208ENST00000469802 TNNT2P45379 298 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-208ENST00000469802 KCNQ4P56696 695 aa22.41■■□□□ 1.18
COL9A3-208ENST00000469802 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.41■■□□□ 1.181e-6■□□□□ 9.8
COL9A3-208ENST00000469802 KIF7Q2M1P5 1343 aa22.4■■□□□ 1.18
COL9A3-208ENST00000469802 PNPLA7Q6ZV29 1317 aa22.4■■□□□ 1.18
COL9A3-208ENST00000469802 IGSF1Q8N6C5 1336 aa22.4■■□□□ 1.18
COL9A3-208ENST00000469802 NKX1-1Q15270 411 aaPredicted RBP22.4■■□□□ 1.18
COL9A3-208ENST00000469802 CCNL1Q9UK58 526 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-208ENST00000469802 C4BP0C0L5 1744 aa22.39■■□□□ 1.17
COL9A3-208ENST00000469802 PALLDQ8WX93 1383 aa22.38■■□□□ 1.17
COL9A3-208ENST00000469802 SPG7Q9UQ90 795 aa22.38■■□□□ 1.17
COL9A3-208ENST00000469802 UBR3Q6ZT12 1888 aa22.38■■□□□ 1.17
COL9A3-208ENST00000469802 MAP3K5Q99683 1374 aa22.37■■□□□ 1.17
COL9A3-208ENST00000469802 SLC16A10Q8TF71 515 aa22.36■■□□□ 1.17
COL9A3-208ENST00000469802 AMER1Q5JTC6 1135 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-208ENST00000469802 KNSTRNQ9Y448 316 aa22.35■■□□□ 1.17
COL9A3-208ENST00000469802 ZNF831Q5JPB2 1677 aa22.34■■□□□ 1.17
COL9A3-208ENST00000469802 MPRIPQ6WCQ1 1025 aa22.34■■□□□ 1.17
COL9A3-208ENST00000469802 MORC1Q86VD1 984 aa22.34■■□□□ 1.17
COL9A3-208ENST00000469802 PHKG2P15735 406 aa22.33■■□□□ 1.17
COL9A3-208ENST00000469802 FHDC1Q9C0D6 1143 aaPredicted RBP22.33■■□□□ 1.17
COL9A3-208ENST00000469802 TFCP2L1Q9NZI6 479 aa22.33■■□□□ 1.17
COL9A3-208ENST00000469802 PIGBQ92521 554 aa22.32■■□□□ 1.16
COL9A3-208ENST00000469802 IFNL2Q8IZJ0 200 aa22.31■■□□□ 1.16
COL9A3-208ENST00000469802 ARXQ96QS3 562 aa22.31■■□□□ 1.16
COL9A3-208ENST00000469802 SYT17Q9BSW7 474 aa22.31■■□□□ 1.16
COL9A3-208ENST00000469802 VIRMAQ69YN4 1812 aaKnown RBP22.31■■□□□ 1.16
COL9A3-208ENST00000469802 KDRP35968 1356 aa22.3■■□□□ 1.16
COL9A3-208ENST00000469802 SMARCC1Q92922 1105 aaPredicted RBP22.3■■□□□ 1.16
COL9A3-208ENST00000469802 COL5A3P25940 1745 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-208ENST00000469802 SCN11AQ9UI33 1791 aa22.29■■□□□ 1.16
COL9A3-208ENST00000469802 CHD4Q14839 1912 aa22.28■■□□□ 1.16
COL9A3-208ENST00000469802 PER1O15534 1290 aaPredicted RBP22.28■■□□□ 1.16
COL9A3-208ENST00000469802 KDM6AO15550 1401 aaPredicted RBP22.27■■□□□ 1.16
COL9A3-208ENST00000469802 HMGB2P26583 209 aaKnown RBP22.27■■□□□ 1.16
COL9A3-208ENST00000469802 TMOD3Q9NYL9 352 aa22.27■■□□□ 1.16
COL9A3-208ENST00000469802 COL23A1Q86Y22 540 aaPredicted RBP22.26■■□□□ 1.15
COL9A3-208ENST00000469802 AEBP1Q8IUX7 1158 aa22.26■■□□□ 1.15
COL9A3-208ENST00000469802 NPC1L1Q9UHC9 1359 aa22.25■■□□□ 1.15
COL9A3-208ENST00000469802 CICQ96RK0 1608 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-208ENST00000469802 DCAF8L1A6NGE4 600 aa22.24■■□□□ 1.15
COL9A3-208ENST00000469802 IL13P35225 146 aa22.24■■□□□ 1.15
COL9A3-208ENST00000469802 LOC102724428A0A0B4J2F2 783 aa22.23■■□□□ 1.15
COL9A3-208ENST00000469802 POLD1P28340 1107 aa22.23■■□□□ 1.15
COL9A3-208ENST00000469802 SIK1P57059 783 aa22.23■■□□□ 1.15
COL9A3-208ENST00000469802 UTRNP46939 3433 aa22.22■■□□□ 1.15
COL9A3-208ENST00000469802 AMOTQ4VCS5 1084 aa22.22■■□□□ 1.15
COL9A3-208ENST00000469802 PLEKHO1Q53GL0 409 aaPredicted RBP22.22■■□□□ 1.15
COL9A3-208ENST00000469802 ASAP1Q9ULH1 1129 aa22.22■■□□□ 1.15
COL9A3-208ENST00000469802 ADAMTS7Q9UKP4 1686 aa22.21■■□□□ 1.15
COL9A3-208ENST00000469802 HSP90AB1P08238 724 aaKnown RBP22.21■■□□□ 1.15
COL9A3-208ENST00000469802 AMIGO3Q86WK7 504 aa22.21■■□□□ 1.15
COL9A3-208ENST00000469802 DCAF5Q96JK2 942 aa22.21■■□□□ 1.15
COL9A3-208ENST00000469802 COL3A1P02461 1466 aaPredicted RBP22.21■■□□□ 1.15
COL9A3-208ENST00000469802 ERVV-2B6SEH9 535 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms