RNA–Protein interactions for RNA: ENST00000469504.1

COL4A3-204, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL4A3, Length 521 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-204ENST00000469504 RAPGEF4Q8WZA2 1011 aa15.21■□□□□ 0.03
COL4A3-204ENST00000469504 MTFR1LQ9H019 292 aa15.21■□□□□ 0.03
COL4A3-204ENST00000469504 NSD3Q9BZ95 1437 aa15.2■□□□□ 0.02
COL4A3-204ENST00000469504 FBLN1P23142 703 aa15.2■□□□□ 0.02
COL4A3-204ENST00000469504 NBPF6Q5VWK0 638 aa15.2■□□□□ 0.02
COL4A3-204ENST00000469504 NBPF4Q96M43 638 aa15.2■□□□□ 0.02
COL4A3-204ENST00000469504 PAPPAQ13219 1627 aa15.2■□□□□ 0.02
COL4A3-204ENST00000469504 BTAF1O14981 1849 aa15.2■□□□□ 0.02
COL4A3-204ENST00000469504 KIF20BQ96Q89 1820 aa15.2■□□□□ 0.02
COL4A3-204ENST00000469504 MEGF6O75095 1541 aa15.19■□□□□ 0.02
COL4A3-204ENST00000469504 TATP17735 454 aaPredicted RBP15.19■□□□□ 0.02
COL4A3-204ENST00000469504 CARD14Q9BXL6 1004 aa15.19■□□□□ 0.02
COL4A3-204ENST00000469504 PCGF6Q9BYE7 350 aa15.19■□□□□ 0.02
COL4A3-204ENST00000469504 MYOM1P52179 1685 aa15.19■□□□□ 0.02
COL4A3-204ENST00000469504 ZBTB7AO95365 584 aa15.18■□□□□ 0.02
COL4A3-204ENST00000469504 PCDH11XQ9BZA7 1347 aa15.17■□□□□ 0.02
COL4A3-204ENST00000469504 PCDH11YQ9BZA8 1340 aa15.17■□□□□ 0.02
COL4A3-204ENST00000469504 PTGER2P43116 358 aa15.17■□□□□ 0.02
COL4A3-204ENST00000469504 PRIM1P49642 420 aaKnown RBP15.17■□□□□ 0.02
COL4A3-204ENST00000469504 EIF4G2P78344 907 aaKnown RBP eCLIP15.17■□□□□ 0.02
COL4A3-204ENST00000469504 HSP90AB2PQ58FF8 381 aa15.17■□□□□ 0.02
COL4A3-204ENST00000469504 SLC16A10Q8TF71 515 aa15.17■□□□□ 0.02
COL4A3-204ENST00000469504 NSD2O96028 1365 aa15.16■□□□□ 0.02
COL4A3-204ENST00000469504 SYTL4Q96C24 671 aaPredicted RBP15.16■□□□□ 0.02
COL4A3-204ENST00000469504 PDGFDQ9GZP0 370 aaPredicted RBP15.16■□□□□ 0.02
COL4A3-204ENST00000469504 PLEKHG2Q9H7P9 1386 aa15.15■□□□□ 0.02
COL4A3-204ENST00000469504 AKT1S1Q96B36 256 aa15.15■□□□□ 0.02
COL4A3-204ENST00000469504 LRRC4BQ9NT99 713 aa15.15■□□□□ 0.02
COL4A3-204ENST00000469504 NCAPD2Q15021 1401 aa15.15■□□□□ 0.02
COL4A3-204ENST00000469504 WASHC2AQ641Q2 1341 aa15.15■□□□□ 0.02
COL4A3-204ENST00000469504 SGIP1Q9BQI5 828 aa15.14■□□□□ 0.01
COL4A3-204ENST00000469504 MAP3K5Q99683 1374 aa15.13■□□□□ 0.01
COL4A3-204ENST00000469504 ZNF827Q17R98 1081 aa15.13■□□□□ 0.01
COL4A3-204ENST00000469504 USHBP1Q8N6Y0 703 aa15.13■□□□□ 0.01
COL4A3-204ENST00000469504 DOT1LQ8TEK3 1739 aa15.13■□□□□ 0.01
COL4A3-204ENST00000469504 SHANK3Q9BYB0 1731 aa15.13■□□□□ 0.01
COL4A3-204ENST00000469504 ATF5Q9Y2D1 282 aaPredicted RBP15.13■□□□□ 0.01
COL4A3-204ENST00000469504 EMILIN1Q9Y6C2 1016 aa15.13■□□□□ 0.01
COL4A3-204ENST00000469504 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.12■□□□□ 0.01
COL4A3-204ENST00000469504 QSER1Q2KHR3 1735 aa15.12■□□□□ 0.01
COL4A3-204ENST00000469504 ANKRD26Q9UPS8 1709 aa15.12■□□□□ 0.01
COL4A3-204ENST00000469504 RGPD2P0DJD1 1756 aa15.11■□□□□ 0.01
COL4A3-204ENST00000469504 CCER1Q8TC90 406 aaPredicted RBP15.11■□□□□ 0.01
COL4A3-204ENST00000469504 ARXQ96QS3 562 aa15.11■□□□□ 0.01
COL4A3-204ENST00000469504 TFCP2L1Q9NZI6 479 aa15.11■□□□□ 0.01
COL4A3-204ENST00000469504 CCNL1Q9UK58 526 aaPredicted RBP15.11■□□□□ 0.01
COL4A3-204ENST00000469504 KAT6BQ8WYB5 2073 aa15.11■□□□□ 0.01
COL4A3-204ENST00000469504 LY75O60449 1722 aa15.1■□□□□ 0.01
COL4A3-204ENST00000469504 YY1P25490 414 aa15.1■□□□□ 0.01
COL4A3-204ENST00000469504 POLD1P28340 1107 aa15.1■□□□□ 0.01
COL4A3-204ENST00000469504 SYT17Q9BSW7 474 aa15.1■□□□□ 0.01
COL4A3-204ENST00000469504 SPG7Q9UQ90 795 aa15.1■□□□□ 0.01
COL4A3-204ENST00000469504 PPM1GO15355 546 aaPredicted RBP15.09■□□□□ 0.01
COL4A3-204ENST00000469504 NKX1-1Q15270 411 aaPredicted RBP15.09■□□□□ 0.01
COL4A3-204ENST00000469504 SMARCC1Q92922 1105 aaPredicted RBP15.09■□□□□ 0.01
COL4A3-204ENST00000469504 FHDC1Q9C0D6 1143 aaPredicted RBP15.09■□□□□ 0.01
COL4A3-204ENST00000469504 RNF39Q9H2S5 420 aa15.09■□□□□ 0.01
COL4A3-204ENST00000469504 POLKQ9UBT6 870 aa15.09■□□□□ 0.01
COL4A3-204ENST00000469504 PNPLA7Q6ZV29 1317 aa15.09■□□□□ 0.01
COL4A3-204ENST00000469504 CYP27B1O15528 508 aa15.08■□□□□ 0
COL4A3-204ENST00000469504 HSPA5P11021 654 aaKnown RBP15.08■□□□□ 0
COL4A3-204ENST00000469504 PKD1L3Q7Z443 1732 aa15.07■□□□□ 0
COL4A3-204ENST00000469504 FLAD1Q8NFF5 587 aa15.07■□□□□ 0
COL4A3-204ENST00000469504 POLR3GLQ9BT43 218 aa15.07■□□□□ 0
COL4A3-204ENST00000469504 PALLDQ8WX93 1383 aa15.07■□□□□ 0
COL4A3-204ENST00000469504 EYA1Q99502 592 aa15.06■□□□□ 0
COL4A3-204ENST00000469504 UTRNP46939 3433 aa15.05■□□□□ -0
COL4A3-204ENST00000469504 MPRIPQ6WCQ1 1025 aa15.05■□□□□ -0
COL4A3-204ENST00000469504 PANK3Q9H999 370 aa15.05■□□□□ -0
COL4A3-204ENST00000469504 COL24A1Q17RW2 1714 aa15.04■□□□□ -0
COL4A3-204ENST00000469504 IFNL2Q8IZJ0 200 aa15.04■□□□□ -0
COL4A3-204ENST00000469504 EIF4A2Q14240 407 aaKnown RBP15.03■□□□□ -0
COL4A3-204ENST00000469504 MAP2P11137 1827 aaKnown RBP15.03■□□□□ -0
COL4A3-204ENST00000469504 IGSF1Q8N6C5 1336 aa15.02■□□□□ -0
COL4A3-204ENST00000469504 HSP90AB1P08238 724 aaKnown RBP15.02■□□□□ -0
COL4A3-204ENST00000469504 KCNQ4P56696 695 aa15.02■□□□□ -0
COL4A3-204ENST00000469504 KNSTRNQ9Y448 316 aa15.02■□□□□ -0
COL4A3-204ENST00000469504 NPM3O75607 178 aaKnown RBP15.01□□□□□ -0.01
COL4A3-204ENST00000469504 PHKG2P15735 406 aa15.01□□□□□ -0.01
COL4A3-204ENST00000469504 PIGBQ92521 554 aa15.01□□□□□ -0.01
COL4A3-204ENST00000469504 TMOD3Q9NYL9 352 aa15.01□□□□□ -0.01
COL4A3-204ENST00000469504 C5P01031 1676 aa15□□□□□ -0.01
COL4A3-204ENST00000469504 TNNT2P45379 298 aaPredicted RBP15□□□□□ -0.01
COL4A3-204ENST00000469504 AMOTQ4VCS5 1084 aa15□□□□□ -0.01
COL4A3-204ENST00000469504 MORC1Q86VD1 984 aa15□□□□□ -0.01
COL4A3-204ENST00000469504 COL23A1Q86Y22 540 aaPredicted RBP15□□□□□ -0.01
COL4A3-204ENST00000469504 AK7Q96M32 723 aa14.99□□□□□ -0.01
COL4A3-204ENST00000469504 TOGARAM1Q9Y4F4 1720 aa14.99□□□□□ -0.01
COL4A3-204ENST00000469504 TUBGCP6Q96RT7 1819 aa14.99□□□□□ -0.01
COL4A3-204ENST00000469504 LOC102724428A0A0B4J2F2 783 aa14.98□□□□□ -0.01
COL4A3-204ENST00000469504 ERVV-2B6SEH9 535 aa14.98□□□□□ -0.01
COL4A3-204ENST00000469504 SIK1P57059 783 aa14.98□□□□□ -0.01
COL4A3-204ENST00000469504 PLEKHO1Q53GL0 409 aaPredicted RBP14.98□□□□□ -0.01
COL4A3-204ENST00000469504 DCAF5Q96JK2 942 aa14.98□□□□□ -0.01
COL4A3-204ENST00000469504 SSFA2P28290 1259 aa14.97□□□□□ -0.01
COL4A3-204ENST00000469504 ITGB4P16144 1822 aa14.96□□□□□ -0.01
COL4A3-204ENST00000469504 C4BP0C0L5 1744 aa14.96□□□□□ -0.01
COL4A3-204ENST00000469504 GPR162Q16538 588 aa14.96□□□□□ -0.01
COL4A3-204ENST00000469504 C1QBPQ07021 282 aaKnown RBP14.95□□□□□ -0.02
COL4A3-204ENST00000469504 CD2APQ9Y5K6 639 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms