RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 TSC1Q92574 1164 aa8.6□□□□□ -1.03
SYNE1-219ENST00000469439 RSPH6AQ9H0K4 717 aa8.6□□□□□ -1.03
SYNE1-219ENST00000469439 SENP2Q9HC62 589 aa8.6□□□□□ -1.03
SYNE1-219ENST00000469439 TCOF1Q13428 1488 aaKnown RBP8.59□□□□□ -1.03
SYNE1-219ENST00000469439 ABCC10Q5T3U5 1492 aa8.59□□□□□ -1.03
SYNE1-219ENST00000469439 SNRPBP14678 240 aaKnown RBP8.59□□□□□ -1.03
SYNE1-219ENST00000469439 RTL5Q5HYW3 569 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-219ENST00000469439 FOXJ1Q92949 421 aa8.59□□□□□ -1.03
SYNE1-219ENST00000469439 GLI2P10070 1586 aa8.59□□□□□ -1.03
SYNE1-219ENST00000469439 ARHGAP5Q13017 1502 aa8.59□□□□□ -1.03
SYNE1-219ENST00000469439 CFAP74Q9C0B2 1584 aa8.58□□□□□ -1.04
SYNE1-219ENST00000469439 PLEKHG3A1L390 1219 aa8.58□□□□□ -1.04
SYNE1-219ENST00000469439 TREML4Q6UXN2 200 aa8.58□□□□□ -1.04
SYNE1-219ENST00000469439 HELBQ8NG08 1087 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-219ENST00000469439 ANKRD30AQ9BXX3 1397 aa8.58□□□□□ -1.04
SYNE1-219ENST00000469439 NEO1Q92859 1461 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 FAM174AQ8TBP5 190 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 KIFC2Q96AC6 838 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 KDM4CQ9H3R0 1056 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 GPBP1L1Q9HC44 474 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-219ENST00000469439 POLR3EQ9NVU0 708 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 MAGI3Q5TCQ9 1506 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.57□□□□□ -1.04
SYNE1-219ENST00000469439 ROCK1Q13464 1354 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 ABCA9Q8IUA7 1624 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 FANCAO15360 1455 aa8.57□□□□□ -1.04
SYNE1-219ENST00000469439 CAPN5O15484 640 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-219ENST00000469439 BMP1P13497 986 aa8.56□□□□□ -1.04
SYNE1-219ENST00000469439 NNTQ13423 1086 aa8.56□□□□□ -1.04
SYNE1-219ENST00000469439 C4orf48Q5BLP8 95 aa8.56□□□□□ -1.04
SYNE1-219ENST00000469439 TRIM46Q7Z4K8 759 aa8.56□□□□□ -1.04
SYNE1-219ENST00000469439 AKNAQ7Z591 1439 aa8.55□□□□□ -1.04
SYNE1-219ENST00000469439 PTPN23Q9H3S7 1636 aa8.55□□□□□ -1.04
SYNE1-219ENST00000469439 ADH1CP00326 375 aa8.55□□□□□ -1.04
SYNE1-219ENST00000469439 ITGAEP38570 1179 aa8.55□□□□□ -1.04
SYNE1-219ENST00000469439 SH3D19Q5HYK7 790 aa8.55□□□□□ -1.04
SYNE1-219ENST00000469439 CDK15Q96Q40 435 aa8.55□□□□□ -1.04
SYNE1-219ENST00000469439 SPAG9O60271 1321 aaKnown RBP8.54□□□□□ -1.04
SYNE1-219ENST00000469439 RTEL1-TNFRSF6BF6WH68 1400 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 LRRIQ1Q96JM4 1722 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 CAMSAP2Q08AD1 1489 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 CCDC141Q6ZP82 1450 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 SHANK2Q9UPX8 1470 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 NFX1Q12986 1120 aaKnown RBP8.54□□□□□ -1.04
SYNE1-219ENST00000469439 ARMC2Q8NEN0 867 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 FAM117AQ9C073 453 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 MYO5CQ9NQX4 1742 aa8.54□□□□□ -1.04
SYNE1-219ENST00000469439 ZNF518AQ6AHZ1 1483 aa8.53□□□□□ -1.04
SYNE1-219ENST00000469439 NBPF14Q5TI25 921 aa8.53□□□□□ -1.04
SYNE1-219ENST00000469439 SH3RF1Q7Z6J0 888 aa8.53□□□□□ -1.04
SYNE1-219ENST00000469439 BPHLQ86WA6 291 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-219ENST00000469439 DDRGK1Q96HY6 314 aa8.53□□□□□ -1.04
SYNE1-219ENST00000469439 C1QTNF2Q9BXJ5 285 aa8.53□□□□□ -1.04
SYNE1-219ENST00000469439 PREX2Q70Z35 1606 aa8.53□□□□□ -1.04
SYNE1-219ENST00000469439 DAPK1P53355 1430 aa8.53□□□□□ -1.04
SYNE1-219ENST00000469439 ADGRL1O94910 1474 aa8.52□□□□□ -1.05
SYNE1-219ENST00000469439 WFS1O76024 890 aa8.52□□□□□ -1.05
SYNE1-219ENST00000469439 TIMP2P16035 220 aa8.52□□□□□ -1.05
SYNE1-219ENST00000469439 ZEB1P37275 1124 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-219ENST00000469439 HNRNPMP52272 730 aaKnown RBP eCLIP8.52□□□□□ -1.05
SYNE1-219ENST00000469439 SKIV2LQ15477 1246 aaKnown RBP8.52□□□□□ -1.05
SYNE1-219ENST00000469439 FBXO31Q5XUX0 539 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-219ENST00000469439 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.52□□□□□ -1.05
SYNE1-219ENST00000469439 SCAPERQ9BY12 1400 aa8.52□□□□□ -1.05
SYNE1-219ENST00000469439 SETD5Q9C0A6 1442 aa8.52□□□□□ -1.05
SYNE1-219ENST00000469439 ARHGEF5Q12774 1597 aa8.52□□□□□ -1.05
SYNE1-219ENST00000469439 CLSPNQ9HAW4 1339 aa8.52□□□□□ -1.05
SYNE1-219ENST00000469439 DENND4BO75064 1496 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-219ENST00000469439 AGERQ15109 404 aa8.51□□□□□ -1.05
SYNE1-219ENST00000469439 SH3BP5LQ7L8J4 393 aa8.51□□□□□ -1.05
SYNE1-219ENST00000469439 KLF16Q9BXK1 252 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-219ENST00000469439 HFM1A2PYH4 1435 aa8.51□□□□□ -1.05
SYNE1-219ENST00000469439 CTDSPL2Q05D32 466 aa8.5□□□□□ -1.05
SYNE1-219ENST00000469439 ARID5BQ14865 1188 aa8.5□□□□□ -1.05
SYNE1-219ENST00000469439 C9orf84Q5VXU9 1444 aa8.5□□□□□ -1.05
SYNE1-219ENST00000469439 PPP2R2DQ66LE6 453 aa8.5□□□□□ -1.05
SYNE1-219ENST00000469439 TTC37Q6PGP7 1564 aa8.5□□□□□ -1.05
SYNE1-219ENST00000469439 GPKOWQ92917 476 aaPredicted RBP eCLIP8.5□□□□□ -1.05
SYNE1-219ENST00000469439 MAGI2Q86UL8 1455 aa8.5□□□□□ -1.05
SYNE1-219ENST00000469439 ZNF644Q9H582 1327 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-219ENST00000469439 DIP2BQ9P265 1576 aa8.49□□□□□ -1.05
SYNE1-219ENST00000469439 ABCC5O15440 1437 aa8.49□□□□□ -1.05
SYNE1-219ENST00000469439 NR3C2P08235 984 aa8.49□□□□□ -1.05
SYNE1-219ENST00000469439 WDR4P57081 412 aaKnown RBP8.49□□□□□ -1.05
SYNE1-219ENST00000469439 NR5A1Q13285 461 aa8.49□□□□□ -1.05
SYNE1-219ENST00000469439 TRMT44Q8IYL2 757 aaKnown RBP8.49□□□□□ -1.05
SYNE1-219ENST00000469439 PROCA1Q8NCQ7 364 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-219ENST00000469439 NCOA1Q15788 1441 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 DNMT1P26358 1616 aaKnown RBP8.48□□□□□ -1.05
SYNE1-219ENST00000469439 TERTO14746 1132 aaKnown RBP8.48□□□□□ -1.05
SYNE1-219ENST00000469439 GRM5P41594 1212 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 LCE2CQ5TA81 110 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 CHIC2Q9UKJ5 165 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 MAP4K5Q9Y4K4 846 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 ADGRL2O95490 1459 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 MBD5Q9P267 1494 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 CDC42BPAQ5VT25 1732 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 KANK1Q14678 1352 aa8.48□□□□□ -1.05
SYNE1-219ENST00000469439 MRPL14Q6P1L8 145 aaKnown RBP8.47□□□□□ -1.05
SYNE1-219ENST00000469439 CCER1Q8TC90 406 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms