RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 PNPLA7Q6ZV29 1317 aa17.21■□□□□ 0.34
HDAC3-204ENST00000469207 TMF1P82094 1093 aa17.2■□□□□ 0.34
HDAC3-204ENST00000469207 HSP90AB2PQ58FF8 381 aa17.2■□□□□ 0.34
HDAC3-204ENST00000469207 KLHL34Q8N239 644 aa17.2■□□□□ 0.34
HDAC3-204ENST00000469207 NSD2O96028 1365 aa17.19■□□□□ 0.34
HDAC3-204ENST00000469207 SLC27A3Q5K4L6 730 aa17.19■□□□□ 0.34
HDAC3-204ENST00000469207 TFCP2L1Q9NZI6 479 aa17.19■□□□□ 0.34
HDAC3-204ENST00000469207 FAM208AQ9UK61 1670 aaKnown RBP17.19■□□□□ 0.34
HDAC3-204ENST00000469207 USP47Q96K76 1375 aa17.17■□□□□ 0.34
HDAC3-204ENST00000469207 SLC24A1O60721 1099 aa17.17■□□□□ 0.34
HDAC3-204ENST00000469207 ZNF784Q8NCA9 323 aaPredicted RBP17.17■□□□□ 0.34
HDAC3-204ENST00000469207 CARD14Q9BXL6 1004 aa17.17■□□□□ 0.34
HDAC3-204ENST00000469207 SHANK3Q9BYB0 1731 aa17.16■□□□□ 0.34
HDAC3-204ENST00000469207 CCNL1Q9UK58 526 aaPredicted RBP17.15■□□□□ 0.34
HDAC3-204ENST00000469207 DOT1LQ8TEK3 1739 aa17.15■□□□□ 0.34
HDAC3-204ENST00000469207 MSH5O43196 834 aa17.14■□□□□ 0.33
HDAC3-204ENST00000469207 TATP17735 454 aaPredicted RBP17.14■□□□□ 0.33
HDAC3-204ENST00000469207 TRIM26Q12899 539 aaPredicted RBP17.14■□□□□ 0.33
HDAC3-204ENST00000469207 SLC16A10Q8TF71 515 aa17.14■□□□□ 0.33
HDAC3-204ENST00000469207 RAPGEF4Q8WZA2 1011 aa17.14■□□□□ 0.33
HDAC3-204ENST00000469207 EMILIN1Q9Y6C2 1016 aa17.14■□□□□ 0.33
HDAC3-204ENST00000469207 GPR162Q16538 588 aa17.13■□□□□ 0.33
HDAC3-204ENST00000469207 COL23A1Q86Y22 540 aaPredicted RBP17.13■□□□□ 0.33
HDAC3-204ENST00000469207 NLGN2Q8NFZ4 835 aa17.13■□□□□ 0.33
HDAC3-204ENST00000469207 POLD1P28340 1107 aa17.12■□□□□ 0.33
HDAC3-204ENST00000469207 PELP1Q8IZL8 1130 aaKnown RBP17.12■□□□□ 0.33
HDAC3-204ENST00000469207 RTL1A6NKG5 1358 aa17.12■□□□□ 0.33
HDAC3-204ENST00000469207 PPM1GO15355 546 aaPredicted RBP17.11■□□□□ 0.33
HDAC3-204ENST00000469207 CYP27B1O15528 508 aa17.11■□□□□ 0.33
HDAC3-204ENST00000469207 MSL1Q68DK7 614 aa17.11■□□□□ 0.33
HDAC3-204ENST00000469207 MPRIPQ6WCQ1 1025 aa17.11■□□□□ 0.33
HDAC3-204ENST00000469207 TUBGCP6Q96RT7 1819 aa17.11■□□□□ 0.33
HDAC3-204ENST00000469207 LY75O60449 1722 aa17.1■□□□□ 0.33
HDAC3-204ENST00000469207 SMIM5Q71RC9 77 aa17.1■□□□□ 0.33
HDAC3-204ENST00000469207 INSRP06213 1382 aa17.1■□□□□ 0.33
HDAC3-204ENST00000469207 MAP3K5Q99683 1374 aa17.1■□□□□ 0.33
HDAC3-204ENST00000469207 SMG6Q86US8 1419 aaKnown RBP17.08■□□□□ 0.32
HDAC3-204ENST00000469207 FLT4P35916 1363 aa17.08■□□□□ 0.32
HDAC3-204ENST00000469207 CGNL1Q0VF96 1302 aa17.08■□□□□ 0.32
HDAC3-204ENST00000469207 GOLGB1Q14789 3259 aaKnown RBP17.08■□□□□ 0.32
HDAC3-204ENST00000469207 NSD3Q9BZ95 1437 aa17.07■□□□□ 0.32
HDAC3-204ENST00000469207 CDCA8Q53HL2 280 aa17.07■□□□□ 0.32
HDAC3-204ENST00000469207 AMIGO3Q86WK7 504 aa17.07■□□□□ 0.32
HDAC3-204ENST00000469207 POLR3GLQ9BT43 218 aa17.07■□□□□ 0.32
HDAC3-204ENST00000469207 PCDH11XQ9BZA7 1347 aa17.06■□□□□ 0.32
HDAC3-204ENST00000469207 PCDH11YQ9BZA8 1340 aa17.06■□□□□ 0.32
HDAC3-204ENST00000469207 QSER1Q2KHR3 1735 aa17.06■□□□□ 0.32
HDAC3-204ENST00000469207 YBX3P16989 372 aaKnown RBP eCLIP17.05■□□□□ 0.32
HDAC3-204ENST00000469207 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
HDAC3-204ENST00000469207 COL24A1Q17RW2 1714 aa17.04■□□□□ 0.32
HDAC3-204ENST00000469207 PALLDQ8WX93 1383 aa17.04■□□□□ 0.32
HDAC3-204ENST00000469207 CHD4Q14839 1912 aa17.04■□□□□ 0.32
HDAC3-204ENST00000469207 PIGBQ92521 554 aa17.04■□□□□ 0.32
HDAC3-204ENST00000469207 EYA1Q99502 592 aa17.04■□□□□ 0.32
HDAC3-204ENST00000469207 PCGF6Q9BYE7 350 aa17.04■□□□□ 0.32
HDAC3-204ENST00000469207 TNNT2P45379 298 aaPredicted RBP17.03■□□□□ 0.32
HDAC3-204ENST00000469207 POLKQ9UBT6 870 aa17.02■□□□□ 0.32
HDAC3-204ENST00000469207 WASHC2AQ641Q2 1341 aa17.01■□□□□ 0.31
HDAC3-204ENST00000469207 KIF24Q5T7B8 1368 aa17.01■□□□□ 0.31
HDAC3-204ENST00000469207 PHF14O94880 888 aa17■□□□□ 0.31
HDAC3-204ENST00000469207 C1QTNF8P60827 252 aa17■□□□□ 0.31
HDAC3-204ENST00000469207 NKX1-1Q15270 411 aaPredicted RBP17■□□□□ 0.31
HDAC3-204ENST00000469207 TOGARAM1Q9Y4F4 1720 aa17■□□□□ 0.31
HDAC3-204ENST00000469207 ITGB4P16144 1822 aa16.99■□□□□ 0.31
HDAC3-204ENST00000469207 WWC3Q9ULE0 1092 aa16.99■□□□□ 0.31
HDAC3-204ENST00000469207 ASAP1Q9ULH1 1129 aa16.99■□□□□ 0.31
HDAC3-204ENST00000469207 SPG7Q9UQ90 795 aa16.99■□□□□ 0.31
HDAC3-204ENST00000469207 C5P01031 1676 aa16.98■□□□□ 0.31
HDAC3-204ENST00000469207 LINC00116Q8NCU8 138 aa16.98■□□□□ 0.31
HDAC3-204ENST00000469207 SMARCC1Q92922 1105 aaPredicted RBP16.98■□□□□ 0.31
HDAC3-204ENST00000469207 AK7Q96M32 723 aa16.98■□□□□ 0.31
HDAC3-204ENST00000469207 MAP2P11137 1827 aaKnown RBP16.98■□□□□ 0.31
HDAC3-204ENST00000469207 SENP3-EIF4A1A0A087X0R7 540 aa16.97■□□□□ 0.31
HDAC3-204ENST00000469207 ITPK1Q13572 414 aa16.97■□□□□ 0.31
HDAC3-204ENST00000469207 EIF4A2Q14240 407 aaKnown RBP16.97■□□□□ 0.31
HDAC3-204ENST00000469207 TAF1LQ8IZX4 1826 aa16.97■□□□□ 0.31
HDAC3-204ENST00000469207 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.96■□□□□ 0.31
HDAC3-204ENST00000469207 LOC102724428A0A0B4J2F2 783 aa16.96■□□□□ 0.31
HDAC3-204ENST00000469207 PHKG2P15735 406 aa16.96■□□□□ 0.31
HDAC3-204ENST00000469207 SIK1P57059 783 aa16.96■□□□□ 0.31
HDAC3-204ENST00000469207 FLAD1Q8NFF5 587 aa16.96■□□□□ 0.31
HDAC3-204ENST00000469207 NCAPD2Q15021 1401 aa16.96■□□□□ 0.3
HDAC3-204ENST00000469207 IFNL2Q8IZJ0 200 aa16.95■□□□□ 0.3
HDAC3-204ENST00000469207 ATG3Q9NT62 314 aa16.95■□□□□ 0.3
HDAC3-204ENST00000469207 TMOD3Q9NYL9 352 aa16.95■□□□□ 0.3
HDAC3-204ENST00000469207 TIMELESSQ9UNS1 1208 aa16.95■□□□□ 0.3
HDAC3-204ENST00000469207 C4BP0C0L5 1744 aa16.95■□□□□ 0.3
HDAC3-204ENST00000469207 PKD1L3Q7Z443 1732 aa16.95■□□□□ 0.3
HDAC3-204ENST00000469207 GRIN3BO60391 1043 aa16.94■□□□□ 0.3
HDAC3-204ENST00000469207 ATP6V1AP38606 617 aa16.94■□□□□ 0.3
HDAC3-204ENST00000469207 PANK3Q9H999 370 aa16.94■□□□□ 0.3
HDAC3-204ENST00000469207 CD2APQ9Y5K6 639 aa16.94■□□□□ 0.3
HDAC3-204ENST00000469207 HSPA5P11021 654 aaKnown RBP16.93■□□□□ 0.3
HDAC3-204ENST00000469207 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.93■□□□□ 0.3
HDAC3-204ENST00000469207 GIGYF1O75420 1035 aaPredicted RBP16.92■□□□□ 0.3
HDAC3-204ENST00000469207 SLC4A9Q96Q91 983 aa16.92■□□□□ 0.3
HDAC3-204ENST00000469207 GNPATO15228 680 aa16.91■□□□□ 0.3
HDAC3-204ENST00000469207 ANKRD26Q9UPS8 1709 aa16.9■□□□□ 0.3
HDAC3-204ENST00000469207 SSFA2P28290 1259 aa16.9■□□□□ 0.3
HDAC3-204ENST00000469207 UBR3Q6ZT12 1888 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms