RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MARCH10Q8NA82 808 aaPredicted RBP16.04■□□□□ 0.16
VPS13D-204ENST00000469054 NUDCQ9Y266 331 aa16.04■□□□□ 0.16
VPS13D-204ENST00000469054 OVOS2A0A0G2JMS6 1433 aa16.03■□□□□ 0.16
VPS13D-204ENST00000469054 FAM196AQ6ZSG2 479 aa16.03■□□□□ 0.16
VPS13D-204ENST00000469054 AEBP1Q8IUX7 1158 aa16.03■□□□□ 0.16
VPS13D-204ENST00000469054 TNS2Q63HR2 1409 aa16.02■□□□□ 0.16
VPS13D-204ENST00000469054 U2SURPO15042 1029 aaKnown RBP16.02■□□□□ 0.16
VPS13D-204ENST00000469054 ANP32CO43423 234 aa16.02■□□□□ 0.16
VPS13D-204ENST00000469054 DDX54Q8TDD1 881 aaKnown RBP16.02■□□□□ 0.16
VPS13D-204ENST00000469054 KDRP35968 1356 aa16.01■□□□□ 0.15
VPS13D-204ENST00000469054 HMOX1P09601 288 aa16.01■□□□□ 0.15
VPS13D-204ENST00000469054 UPF1Q92900 1129 aaKnown RBP eCLIP16.01■□□□□ 0.15
VPS13D-204ENST00000469054 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.01■□□□□ 0.153e-6■■□□□ 13.1
VPS13D-204ENST00000469054 PARP4Q9UKK3 1724 aaKnown RBP16.01■□□□□ 0.15
VPS13D-204ENST00000469054 RGPD2P0DJD1 1756 aa16■□□□□ 0.15
VPS13D-204ENST00000469054 SPG7Q9UQ90 795 aa16■□□□□ 0.15
VPS13D-204ENST00000469054 LRRC37A3O60309 1634 aa16■□□□□ 0.15
VPS13D-204ENST00000469054 PLEKHG2Q9H7P9 1386 aa16■□□□□ 0.15
VPS13D-204ENST00000469054 RNF216Q9NWF9 866 aaPredicted RBP15.99■□□□□ 0.15
VPS13D-204ENST00000469054 BRWD3Q6RI45 1802 aa15.98■□□□□ 0.15
VPS13D-204ENST00000469054 U2AF1L5P0DN76 240 aaPredicted RBP15.98■□□□□ 0.15
VPS13D-204ENST00000469054 HOXD11P31277 338 aaPredicted RBP15.98■□□□□ 0.15
VPS13D-204ENST00000469054 U2AF1Q01081 240 aaKnown RBP eCLIP15.98■□□□□ 0.155e-7■■■□□ 18.7
VPS13D-204ENST00000469054 AMOTQ4VCS5 1084 aa15.98■□□□□ 0.15
VPS13D-204ENST00000469054 PLEKHO1Q53GL0 409 aaPredicted RBP15.98■□□□□ 0.15
VPS13D-204ENST00000469054 PCDH11XQ9BZA7 1347 aa15.97■□□□□ 0.15
VPS13D-204ENST00000469054 PCDH11YQ9BZA8 1340 aa15.97■□□□□ 0.15
VPS13D-204ENST00000469054 BCL9O00512 1426 aa15.97■□□□□ 0.15
VPS13D-204ENST00000469054 WNK3Q9BYP7 1800 aa15.97■□□□□ 0.15
VPS13D-204ENST00000469054 CCDC125Q86Z20 511 aa15.97■□□□□ 0.15
VPS13D-204ENST00000469054 CYP27B1O15528 508 aa15.96■□□□□ 0.15
VPS13D-204ENST00000469054 RGPD1P0DJD0 1748 aa15.96■□□□□ 0.15
VPS13D-204ENST00000469054 FCHSD2O94868 740 aa15.95■□□□□ 0.14
VPS13D-204ENST00000469054 TRIM37O94972 964 aa15.95■□□□□ 0.14
VPS13D-204ENST00000469054 IFNL2Q8IZJ0 200 aa15.95■□□□□ 0.14
VPS13D-204ENST00000469054 RSPH6AQ9H0K4 717 aa15.95■□□□□ 0.14
VPS13D-204ENST00000469054 PHKG2P15735 406 aa15.94■□□□□ 0.14
VPS13D-204ENST00000469054 SF3B2Q13435 895 aaKnown RBP15.94■□□□□ 0.14
VPS13D-204ENST00000469054 PRKAR2BP31323 418 aa15.93■□□□□ 0.14
VPS13D-204ENST00000469054 NKX1-1Q15270 411 aaPredicted RBP15.93■□□□□ 0.14
VPS13D-204ENST00000469054 ZNF530Q6P9A1 599 aaPredicted RBP15.93■□□□□ 0.14
VPS13D-204ENST00000469054 ACSBG1Q96GR2 724 aa15.93■□□□□ 0.14
VPS13D-204ENST00000469054 BCL11BQ9C0K0 894 aaPredicted RBP15.92■□□□□ 0.14
VPS13D-204ENST00000469054 KCNQ2O43526 872 aa15.91■□□□□ 0.14
VPS13D-204ENST00000469054 HSP90AB1P08238 724 aaKnown RBP15.91■□□□□ 0.14
VPS13D-204ENST00000469054 MTHFSDQ2M296 383 aaKnown RBP15.91■□□□□ 0.14
VPS13D-204ENST00000469054 CCDC184Q52MB2 194 aa15.91■□□□□ 0.14
VPS13D-204ENST00000469054 C1orf141Q5JVX7 400 aa15.91■□□□□ 0.14
VPS13D-204ENST00000469054 WDR43Q15061 677 aaKnown RBP eCLIP15.9■□□□□ 0.14
VPS13D-204ENST00000469054 PTF1AQ7RTS3 328 aa15.9■□□□□ 0.14
VPS13D-204ENST00000469054 PHACTR3Q96KR7 559 aa15.9■□□□□ 0.14
VPS13D-204ENST00000469054 PNNQ9H307 717 aaKnown RBP15.9■□□□□ 0.14
VPS13D-204ENST00000469054 APBA3O96018 575 aa15.89■□□□□ 0.13
VPS13D-204ENST00000469054 PRIM1P49642 420 aaKnown RBP15.89■□□□□ 0.13
VPS13D-204ENST00000469054 AKAP4Q5JQC9 854 aa15.89■□□□□ 0.13
VPS13D-204ENST00000469054 DIEXFQ68CQ4 756 aaKnown RBP15.89■□□□□ 0.13
VPS13D-204ENST00000469054 GAS2L2Q8NHY3 880 aa15.89■□□□□ 0.13
VPS13D-204ENST00000469054 PKD1L3Q7Z443 1732 aa15.88■□□□□ 0.13
VPS13D-204ENST00000469054 NEFMP07197 916 aa15.88■□□□□ 0.13
VPS13D-204ENST00000469054 BAG6P46379 1132 aa15.88■□□□□ 0.13
VPS13D-204ENST00000469054 DEFB132Q7Z7B7 95 aa15.88■□□□□ 0.13
VPS13D-204ENST00000469054 SYTL4Q96C24 671 aaPredicted RBP15.88■□□□□ 0.13
VPS13D-204ENST00000469054 DCAF5Q96JK2 942 aa15.88■□□□□ 0.13
VPS13D-204ENST00000469054 PLEKHF1Q96S99 279 aa15.88■□□□□ 0.13
VPS13D-204ENST00000469054 MRS2Q9HD23 443 aa15.88■□□□□ 0.13
VPS13D-204ENST00000469054 ADAMTS8Q9UP79 889 aa15.87■□□□□ 0.13
VPS13D-204ENST00000469054 SHANK3Q9BYB0 1731 aa15.87■□□□□ 0.13
VPS13D-204ENST00000469054 EP400Q96L91 3159 aa15.86■□□□□ 0.13
VPS13D-204ENST00000469054 MPRIPQ6WCQ1 1025 aa15.86■□□□□ 0.13
VPS13D-204ENST00000469054 ERVV-2B6SEH9 535 aa15.85■□□□□ 0.13
VPS13D-204ENST00000469054 EN1Q05925 392 aaPredicted RBP15.85■□□□□ 0.13
VPS13D-204ENST00000469054 PLSCR1O15162 318 aa15.84■□□□□ 0.13
VPS13D-204ENST00000469054 PNISRQ8TF01 805 aaKnown RBP15.84■□□□□ 0.13
VPS13D-204ENST00000469054 MAPK8IP3Q9UPT6 1336 aa15.84■□□□□ 0.13
VPS13D-204ENST00000469054 GNAT3A8MTJ3 354 aa15.83■□□□□ 0.12
VPS13D-204ENST00000469054 RNMTO43148 476 aaKnown RBP15.83■□□□□ 0.12
VPS13D-204ENST00000469054 PIGBQ92521 554 aa15.83■□□□□ 0.12
VPS13D-204ENST00000469054 CAMKK2Q96RR4 588 aa15.83■□□□□ 0.12
VPS13D-204ENST00000469054 LGR6Q9HBX8 967 aa15.83■□□□□ 0.12
VPS13D-204ENST00000469054 TMOD3Q9NYL9 352 aa15.83■□□□□ 0.12
VPS13D-204ENST00000469054 KDM6AO15550 1401 aaPredicted RBP15.83■□□□□ 0.12
VPS13D-204ENST00000469054 CABP4P57796 275 aa15.82■□□□□ 0.12
VPS13D-204ENST00000469054 EZH2Q15910 746 aaKnown RBP15.82■□□□□ 0.12
VPS13D-204ENST00000469054 CCDC146Q8IYE0 955 aa15.82■□□□□ 0.12
VPS13D-204ENST00000469054 RUNDC1Q96C34 613 aa15.82■□□□□ 0.12
VPS13D-204ENST00000469054 MAP3K5Q99683 1374 aa15.82■□□□□ 0.12
VPS13D-204ENST00000469054 NFE2L2Q16236 605 aa15.81■□□□□ 0.12
VPS13D-204ENST00000469054 HTATSF1O43719 755 aaKnown RBP15.8■□□□□ 0.12
VPS13D-204ENST00000469054 NFATC2IPQ8NCF5 419 aa15.8■□□□□ 0.12
VPS13D-204ENST00000469054 IL17REQ8NFR9 667 aa15.8■□□□□ 0.12
VPS13D-204ENST00000469054 NHSQ6T4R5 1651 aa15.79■□□□□ 0.12
VPS13D-204ENST00000469054 PROM2Q8N271 834 aa15.79■□□□□ 0.12
VPS13D-204ENST00000469054 RTF1Q92541 710 aaKnown RBP15.79■□□□□ 0.12
VPS13D-204ENST00000469054 SLC52A2Q9HAB3 445 aa15.79■□□□□ 0.12
VPS13D-204ENST00000469054 SBF2Q86WG5 1849 aa15.79■□□□□ 0.12
VPS13D-204ENST00000469054 TNS1Q9HBL0 1735 aaKnown RBP15.78■□□□□ 0.12
VPS13D-204ENST00000469054 CCER2I3L3R5 266 aa15.78■□□□□ 0.12
VPS13D-204ENST00000469054 TMPOP42166 694 aaKnown RBP15.78■□□□□ 0.12
VPS13D-204ENST00000469054 TXNRD1Q16881 649 aa15.78■□□□□ 0.12
VPS13D-204ENST00000469054 SMARCC1Q92922 1105 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms