RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 LTV1Q96GA3 475 aaPredicted RBP7.94□□□□□ -1.14
USP39-213ENST00000467885 PHACTR3Q96KR7 559 aa7.94□□□□□ -1.14
USP39-213ENST00000467885 PCDHB13Q9Y5F0 798 aa7.94□□□□□ -1.14
USP39-213ENST00000467885 PIK3C2AO00443 1686 aa7.94□□□□□ -1.14
USP39-213ENST00000467885 JCADQ9P266 1359 aa7.94□□□□□ -1.14
USP39-213ENST00000467885 SMG6Q86US8 1419 aaKnown RBP7.94□□□□□ -1.14
USP39-213ENST00000467885 SLIT3O75094 1523 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 HMOX1P09601 288 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 WDR43Q15061 677 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP39-213ENST00000467885 IER5LQ5T953 404 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 SULT6B1Q6IMI4 303 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 AEBP1Q8IUX7 1158 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 FNBP4Q8N3X1 1017 aaPredicted RBP7.93□□□□□ -1.14
USP39-213ENST00000467885 RSPH6AQ9H0K4 717 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 PRDM11Q9NQV5 511 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 BTG4Q9NY30 223 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 SPATA31A6Q5VVP1 1343 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 FLT4P35916 1363 aa7.93□□□□□ -1.14
USP39-213ENST00000467885 ALS2Q96Q42 1657 aa7.92□□□□□ -1.14
USP39-213ENST00000467885 APAF1O14727 1248 aa7.92□□□□□ -1.14
USP39-213ENST00000467885 EVA1CP58658 441 aa7.92□□□□□ -1.14
USP39-213ENST00000467885 RUNDC1Q96C34 613 aa7.92□□□□□ -1.14
USP39-213ENST00000467885 IGSF1Q8N6C5 1336 aa7.92□□□□□ -1.14
USP39-213ENST00000467885 COL3A1P02461 1466 aaPredicted RBP7.92□□□□□ -1.14
USP39-213ENST00000467885 NFAT5O94916 1531 aa7.92□□□□□ -1.14
USP39-213ENST00000467885 NHSL1Q5SYE7 1610 aa7.92□□□□□ -1.14
USP39-213ENST00000467885 LARP1Q6PKG0 1096 aaKnown RBP7.91□□□□□ -1.14
USP39-213ENST00000467885 IFNL1Q8IU54 200 aa7.91□□□□□ -1.14
USP39-213ENST00000467885 CCDC146Q8IYE0 955 aa7.91□□□□□ -1.14
USP39-213ENST00000467885 TCP11L2Q8N4U5 519 aa7.91□□□□□ -1.14
USP39-213ENST00000467885 NGLY1Q96IV0 654 aa7.91□□□□□ -1.14
USP39-213ENST00000467885 COL16A1Q07092 1604 aaPredicted RBP7.9□□□□□ -1.14
USP39-213ENST00000467885 RTL1A6NKG5 1358 aa7.9□□□□□ -1.14
USP39-213ENST00000467885 ERBB3P21860 1342 aa7.9□□□□□ -1.14
USP39-213ENST00000467885 SENP3-EIF4A1A0A087X0R7 540 aa7.9□□□□□ -1.14
USP39-213ENST00000467885 PRKAR2BP31323 418 aa7.9□□□□□ -1.14
USP39-213ENST00000467885 USHBP1Q8N6Y0 703 aa7.9□□□□□ -1.14
USP39-213ENST00000467885 CARD10Q9BWT7 1032 aa7.9□□□□□ -1.14
USP39-213ENST00000467885 PNNQ9H307 717 aaKnown RBP7.9□□□□□ -1.14
USP39-213ENST00000467885 NLRP2Q9NX02 1062 aa7.9□□□□□ -1.14
USP39-213ENST00000467885 ZBTB47Q9UFB7 747 aaPredicted RBP7.9□□□□□ -1.14
USP39-213ENST00000467885 MARF1Q9Y4F3 1742 aaKnown RBP7.89□□□□□ -1.15
USP39-213ENST00000467885 CAMTA1Q9Y6Y1 1673 aa7.89□□□□□ -1.15
USP39-213ENST00000467885 CDK12Q9NYV4 1490 aaPredicted RBP7.89□□□□□ -1.15
USP39-213ENST00000467885 WDR17Q8IZU2 1322 aa7.89□□□□□ -1.15
USP39-213ENST00000467885 TMPOP42166 694 aaKnown RBP7.89□□□□□ -1.15
USP39-213ENST00000467885 MTHFSDQ2M296 383 aaKnown RBP7.89□□□□□ -1.15
USP39-213ENST00000467885 UNC5CLQ8IV45 518 aa7.89□□□□□ -1.15
USP39-213ENST00000467885 STRN4Q9NRL3 753 aa7.89□□□□□ -1.15
USP39-213ENST00000467885 MAP2P11137 1827 aaKnown RBP7.89□□□□□ -1.15
USP39-213ENST00000467885 USP54Q70EL1 1684 aa7.89□□□□□ -1.15
USP39-213ENST00000467885 BLMP54132 1417 aaPredicted RBP7.88□□□□□ -1.15
USP39-213ENST00000467885 KDRP35968 1356 aa7.88□□□□□ -1.15
USP39-213ENST00000467885 CSB-PGBD3P0DP91 1061 aa7.88□□□□□ -1.15
USP39-213ENST00000467885 TOM1L2Q6ZVM7 507 aa7.88□□□□□ -1.15
USP39-213ENST00000467885 C8orf37Q96NL8 207 aa7.88□□□□□ -1.15
USP39-213ENST00000467885 SALL2Q9Y467 1007 aaPredicted RBP7.88□□□□□ -1.15
USP39-213ENST00000467885 PEAK1Q9H792 1746 aa7.88□□□□□ -1.15
USP39-213ENST00000467885 PHLPP1O60346 1717 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 ONECUT3O60422 494 aaPredicted RBP7.87□□□□□ -1.15
USP39-213ENST00000467885 RIPK4P57078 832 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 HNRNPUQ00839 825 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP39-213ENST00000467885 NGEFQ8N5V2 710 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 FAM212AQ96EL1 285 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 YTHDC1Q96MU7 727 aaKnown RBP7.87□□□□□ -1.15
USP39-213ENST00000467885 TMEM106CQ9BVX2 250 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP39-213ENST00000467885 RRP7AQ9Y3A4 280 aaKnown RBP7.87□□□□□ -1.15
USP39-213ENST00000467885 KIF20BQ96Q89 1820 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 BCL9LQ86UU0 1499 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 COL18A1P39060 1754 aa7.87□□□□□ -1.15
USP39-213ENST00000467885 ANKRD26Q9UPS8 1709 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 SPATA31A1Q5TZJ5 1347 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 SPATA31A5Q5VU36 1347 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 SPATA31A7Q8IWB4 1347 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 ZNF521Q96K83 1311 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 NEUROD2Q15784 382 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 VPS72Q15906 364 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 NFE2L2Q16236 605 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 CCDC27Q2M243 656 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 PLEKHO1Q53GL0 409 aaPredicted RBP7.86□□□□□ -1.15
USP39-213ENST00000467885 ILDR1Q86SU0 546 aaPredicted RBP7.86□□□□□ -1.15
USP39-213ENST00000467885 WWC1Q8IX03 1113 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 TRMT2AQ8IZ69 625 aaKnown RBP7.86□□□□□ -1.15
USP39-213ENST00000467885 IL17REQ8NFR9 667 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 QTRT2Q9H974 415 aaKnown RBP7.86□□□□□ -1.15
USP39-213ENST00000467885 USP21Q9UK80 565 aa7.86□□□□□ -1.15
USP39-213ENST00000467885 COL22A1Q8NFW1 1626 aaPredicted RBP7.85□□□□□ -1.15
USP39-213ENST00000467885 SLIT2O94813 1529 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 HTATSF1O43719 755 aaKnown RBP7.85□□□□□ -1.15
USP39-213ENST00000467885 AMOTQ4VCS5 1084 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 BARGINQ6ZT62 677 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 SLAIN1Q8ND83 568 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 CDCA7LQ96GN5 454 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 LGR6Q9HBX8 967 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 USP35Q9P2H5 1018 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 RGS17Q9UGC6 210 aaPredicted RBP7.85□□□□□ -1.15
USP39-213ENST00000467885 THRAP3Q9Y2W1 955 aaKnown RBP7.85□□□□□ -1.15
USP39-213ENST00000467885 NCAPD2Q15021 1401 aa7.85□□□□□ -1.15
USP39-213ENST00000467885 COL5A2P05997 1499 aaPredicted RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 226.4 ms