RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 NBPF6Q5VWK0 638 aa29.36■■■□□ 2.29
COL9A3-207ENST00000467819 NBPF4Q96M43 638 aa29.36■■■□□ 2.29
COL9A3-207ENST00000467819 LY75O60449 1722 aa29.35■■■□□ 2.29
COL9A3-207ENST00000467819 QSER1Q2KHR3 1735 aa29.35■■■□□ 2.29
COL9A3-207ENST00000467819 YY1P25490 414 aa29.35■■■□□ 2.29
COL9A3-207ENST00000467819 PRIM1P49642 420 aaKnown RBP29.35■■■□□ 2.29
COL9A3-207ENST00000467819 TUBGCP6Q96RT7 1819 aa29.35■■■□□ 2.29
COL9A3-207ENST00000467819 NSD3Q9BZ95 1437 aa29.34■■■□□ 2.29
COL9A3-207ENST00000467819 CARD14Q9BXL6 1004 aa29.32■■■□□ 2.28
COL9A3-207ENST00000467819 PCGF6Q9BYE7 350 aa29.32■■■□□ 2.28
COL9A3-207ENST00000467819 NSD2O96028 1365 aa29.31■■■□□ 2.28
COL9A3-207ENST00000467819 INSRP06213 1382 aa29.31■■■□□ 2.28
COL9A3-207ENST00000467819 FLT4P35916 1363 aa29.31■■■□□ 2.28
COL9A3-207ENST00000467819 HSP90AB2PQ58FF8 381 aa29.31■■■□□ 2.28
COL9A3-207ENST00000467819 SLC27A3Q5K4L6 730 aa29.31■■■□□ 2.28
COL9A3-207ENST00000467819 RAPGEF4Q8WZA2 1011 aa29.3■■■□□ 2.28
COL9A3-207ENST00000467819 SGIP1Q9BQI5 828 aa29.3■■■□□ 2.28
COL9A3-207ENST00000467819 TIMELESSQ9UNS1 1208 aa29.3■■■□□ 2.28
COL9A3-207ENST00000467819 KCNQ4P56696 695 aa29.29■■■□□ 2.28
COL9A3-207ENST00000467819 FHDC1Q9C0D6 1143 aaPredicted RBP29.29■■■□□ 2.28
COL9A3-207ENST00000467819 AKT1S1Q96B36 256 aa29.28■■■□□ 2.28
COL9A3-207ENST00000467819 MAP2P11137 1827 aaKnown RBP29.27■■■□□ 2.28
COL9A3-207ENST00000467819 CGNL1Q0VF96 1302 aa29.27■■■□□ 2.28
COL9A3-207ENST00000467819 TATP17735 454 aaPredicted RBP29.27■■■□□ 2.28
COL9A3-207ENST00000467819 KIF24Q5T7B8 1368 aa29.26■■■□□ 2.28
COL9A3-207ENST00000467819 ANKRD26Q9UPS8 1709 aa29.25■■■□□ 2.27
COL9A3-207ENST00000467819 SYT17Q9BSW7 474 aa29.25■■■□□ 2.27
COL9A3-207ENST00000467819 EMILIN1Q9Y6C2 1016 aa29.25■■■□□ 2.27
COL9A3-207ENST00000467819 CLSPNQ9HAW4 1339 aa29.24■■■□□ 2.27
COL9A3-207ENST00000467819 ARXQ96QS3 562 aa29.24■■■□□ 2.27
COL9A3-207ENST00000467819 POLR3GLQ9BT43 218 aa29.22■■■□□ 2.27
COL9A3-207ENST00000467819 TFCP2L1Q9NZI6 479 aa29.22■■■□□ 2.27
COL9A3-207ENST00000467819 PNPLA7Q6ZV29 1317 aa29.21■■■□□ 2.27
COL9A3-207ENST00000467819 PKD1L3Q7Z443 1732 aa29.21■■■□□ 2.27
COL9A3-207ENST00000467819 PPM1GO15355 546 aaPredicted RBP29.21■■■□□ 2.27
COL9A3-207ENST00000467819 CCNL1Q9UK58 526 aaPredicted RBP29.21■■■□□ 2.27
COL9A3-207ENST00000467819 UTRNP46939 3433 aa29.21■■■□□ 2.27
COL9A3-207ENST00000467819 PCDH11XQ9BZA7 1347 aa29.2■■■□□ 2.27
COL9A3-207ENST00000467819 PCDH11YQ9BZA8 1340 aa29.2■■■□□ 2.27
COL9A3-207ENST00000467819 COL24A1Q17RW2 1714 aa29.2■■■□□ 2.27
COL9A3-207ENST00000467819 TOGARAM1Q9Y4F4 1720 aa29.2■■■□□ 2.27
COL9A3-207ENST00000467819 ITGB4P16144 1822 aa29.2■■■□□ 2.27
COL9A3-207ENST00000467819 C5P01031 1676 aa29.18■■■□□ 2.26
COL9A3-207ENST00000467819 SLC16A10Q8TF71 515 aa29.17■■■□□ 2.26
COL9A3-207ENST00000467819 CHD4Q14839 1912 aa29.16■■■□□ 2.26
COL9A3-207ENST00000467819 TAF1LQ8IZX4 1826 aa29.16■■■□□ 2.26
COL9A3-207ENST00000467819 CYP27B1O15528 508 aa29.14■■■□□ 2.26
COL9A3-207ENST00000467819 MAP3K5Q99683 1374 aa29.13■■■□□ 2.25
COL9A3-207ENST00000467819 NCAPD2Q15021 1401 aa29.13■■■□□ 2.25
COL9A3-207ENST00000467819 POLD1P28340 1107 aa29.13■■■□□ 2.25
COL9A3-207ENST00000467819 KLHL34Q8N239 644 aa29.13■■■□□ 2.25
COL9A3-207ENST00000467819 MPRIPQ6WCQ1 1025 aa29.12■■■□□ 2.25
COL9A3-207ENST00000467819 WASHC2AQ641Q2 1341 aa29.11■■■□□ 2.25
COL9A3-207ENST00000467819 MSH5O43196 834 aa29.1■■■□□ 2.25
COL9A3-207ENST00000467819 PALLDQ8WX93 1383 aa29.1■■■□□ 2.25
COL9A3-207ENST00000467819 TNNT2P45379 298 aaPredicted RBP29.08■■■□□ 2.25
COL9A3-207ENST00000467819 POLKQ9UBT6 870 aa29.08■■■□□ 2.25
COL9A3-207ENST00000467819 HSPA5P11021 654 aaKnown RBP29.07■■■□□ 2.24
COL9A3-207ENST00000467819 EIF4G2P78344 907 aaKnown RBP eCLIP29.07■■■□□ 2.24
COL9A3-207ENST00000467819 EYA1Q99502 592 aa29.07■■■□□ 2.24
COL9A3-207ENST00000467819 COL23A1Q86Y22 540 aaPredicted RBP29.06■■■□□ 2.24
COL9A3-207ENST00000467819 SPG7Q9UQ90 795 aa29.05■■■□□ 2.24
COL9A3-207ENST00000467819 C4BP0C0L5 1744 aa29.04■■■□□ 2.24
COL9A3-207ENST00000467819 GPR162Q16538 588 aa29.02■■■□□ 2.24
COL9A3-207ENST00000467819 CCER1Q8TC90 406 aaPredicted RBP29.02■■■□□ 2.24
COL9A3-207ENST00000467819 MSL1Q68DK7 614 aa29.01■■■□□ 2.23
COL9A3-207ENST00000467819 PIGBQ92521 554 aa29.01■■■□□ 2.23
COL9A3-207ENST00000467819 SMARCC1Q92922 1105 aaPredicted RBP29.01■■■□□ 2.23
COL9A3-207ENST00000467819 EIF4A2Q14240 407 aaKnown RBP29■■■□□ 2.23
COL9A3-207ENST00000467819 NKX1-1Q15270 411 aaPredicted RBP29■■■□□ 2.23
COL9A3-207ENST00000467819 UBR3Q6ZT12 1888 aa29■■■□□ 2.23
COL9A3-207ENST00000467819 GOLGB1Q14789 3259 aaKnown RBP28.99■■■□□ 2.23
COL9A3-207ENST00000467819 PELP1Q8IZL8 1130 aaKnown RBP28.99■■■□□ 2.23
COL9A3-207ENST00000467819 PANK3Q9H999 370 aa28.99■■■□□ 2.23
COL9A3-207ENST00000467819 ZNF784Q8NCA9 323 aaPredicted RBP28.98■■■□□ 2.23
COL9A3-207ENST00000467819 NLGN2Q8NFZ4 835 aa28.98■■■□□ 2.23
COL9A3-207ENST00000467819 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.97■■■□□ 2.23
COL9A3-207ENST00000467819 HMGB2P26583 209 aaKnown RBP28.96■■■□□ 2.23
COL9A3-207ENST00000467819 PHKG2P15735 406 aa28.95■■■□□ 2.22
COL9A3-207ENST00000467819 IFNL2Q8IZJ0 200 aa28.95■■■□□ 2.22
COL9A3-207ENST00000467819 AK7Q96M32 723 aa28.95■■■□□ 2.22
COL9A3-207ENST00000467819 TMOD3Q9NYL9 352 aa28.95■■■□□ 2.22
COL9A3-207ENST00000467819 FLAD1Q8NFF5 587 aa28.94■■■□□ 2.22
COL9A3-207ENST00000467819 PHF14O94880 888 aa28.91■■■□□ 2.22
COL9A3-207ENST00000467819 IGSF1Q8N6C5 1336 aa28.91■■■□□ 2.22
COL9A3-207ENST00000467819 LOC102724428A0A0B4J2F2 783 aa28.9■■■□□ 2.22
COL9A3-207ENST00000467819 SIK1P57059 783 aa28.9■■■□□ 2.22
COL9A3-207ENST00000467819 SMIM5Q71RC9 77 aa28.9■■■□□ 2.22
COL9A3-207ENST00000467819 AMIGO3Q86WK7 504 aa28.9■■■□□ 2.22
COL9A3-207ENST00000467819 ASAP1Q9ULH1 1129 aa28.9■■■□□ 2.22
COL9A3-207ENST00000467819 MORC1Q86VD1 984 aa28.88■■■□□ 2.21
COL9A3-207ENST00000467819 LINC00116Q8NCU8 138 aa28.88■■■□□ 2.21
COL9A3-207ENST00000467819 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.86■■■□□ 2.21
COL9A3-207ENST00000467819 PLEKHG2Q9H7P9 1386 aa28.86■■■□□ 2.21
COL9A3-207ENST00000467819 ATP6V1AP38606 617 aa28.84■■■□□ 2.21
COL9A3-207ENST00000467819 ITPK1Q13572 414 aa28.84■■■□□ 2.21
COL9A3-207ENST00000467819 ATG3Q9NT62 314 aa28.84■■■□□ 2.21
COL9A3-207ENST00000467819 YBX3P16989 372 aaKnown RBP eCLIP28.83■■■□□ 2.21
COL9A3-207ENST00000467819 SSFA2P28290 1259 aa28.82■■■□□ 2.2
COL9A3-207ENST00000467819 PLEKHO1Q53GL0 409 aaPredicted RBP28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms