RNA–Protein interactions for RNA: ENST00000467717.5

VARS2-204, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 863 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-204ENST00000467717 MYT1Q01538 1121 aa22.71■■□□□ 1.23
VARS2-204ENST00000467717 PNNQ9H307 717 aaKnown RBP22.71■■□□□ 1.23
VARS2-204ENST00000467717 RGPD1P0DJD0 1748 aa22.71■■□□□ 1.23
VARS2-204ENST00000467717 PRKAR2BP31323 418 aa22.7■■□□□ 1.22
VARS2-204ENST00000467717 SEPT12Q8IYM1 358 aa22.7■■□□□ 1.22
VARS2-204ENST00000467717 PLEKHG2Q9H7P9 1386 aa22.7■■□□□ 1.22
VARS2-204ENST00000467717 MEGF6O75095 1541 aa22.7■■□□□ 1.22
VARS2-204ENST00000467717 EXOC5O00471 708 aa22.69■■□□□ 1.22
VARS2-204ENST00000467717 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.69■■□□□ 1.221e-7■■□□□ 12.1
VARS2-204ENST00000467717 OVOS2A0A0G2JMS6 1433 aa22.68■■□□□ 1.22
VARS2-204ENST00000467717 DDB1Q16531 1140 aa22.68■■□□□ 1.22
VARS2-204ENST00000467717 AMOTQ4VCS5 1084 aa22.68■■□□□ 1.22
VARS2-204ENST00000467717 ZCRB1Q8TBF4 217 aaKnown RBP22.68■■□□□ 1.22
VARS2-204ENST00000467717 PLEKHO1Q53GL0 409 aaPredicted RBP22.67■■□□□ 1.22
VARS2-204ENST00000467717 SPG7Q9UQ90 795 aa22.67■■□□□ 1.22
VARS2-204ENST00000467717 NEFMP07197 916 aa22.66■■□□□ 1.22
VARS2-204ENST00000467717 FAM9BQ8IZU0 186 aa22.66■■□□□ 1.22
VARS2-204ENST00000467717 PLEKHF1Q96S99 279 aa22.66■■□□□ 1.22
VARS2-204ENST00000467717 RGPD2P0DJD1 1756 aa22.65■■□□□ 1.22
VARS2-204ENST00000467717 EP400Q96L91 3159 aa22.64■■□□□ 1.21
VARS2-204ENST00000467717 PDE3BQ13370 1112 aa22.64■■□□□ 1.21
VARS2-204ENST00000467717 PHACTR3Q96KR7 559 aa22.64■■□□□ 1.21
VARS2-204ENST00000467717 MAPK8IP3Q9UPT6 1336 aa22.63■■□□□ 1.21
VARS2-204ENST00000467717 TNS2Q63HR2 1409 aa22.63■■□□□ 1.21
VARS2-204ENST00000467717 CCDC146Q8IYE0 955 aa22.62■■□□□ 1.21
VARS2-204ENST00000467717 RUNDC1Q96C34 613 aa22.62■■□□□ 1.21
VARS2-204ENST00000467717 PCDH11XQ9BZA7 1347 aa22.61■■□□□ 1.21
VARS2-204ENST00000467717 PCDH11YQ9BZA8 1340 aa22.61■■□□□ 1.21
VARS2-204ENST00000467717 MTHFSDQ2M296 383 aaKnown RBP22.61■■□□□ 1.21
VARS2-204ENST00000467717 GAS2L2Q8NHY3 880 aa22.61■■□□□ 1.21
VARS2-204ENST00000467717 DDX54Q8TDD1 881 aaKnown RBP22.61■■□□□ 1.21
VARS2-204ENST00000467717 THSD7AQ9UPZ6 1657 aa22.61■■□□□ 1.21
VARS2-204ENST00000467717 ZNF530Q6P9A1 599 aaPredicted RBP22.59■■□□□ 1.21
VARS2-204ENST00000467717 KRT27Q7Z3Y8 459 aa22.59■■□□□ 1.21
VARS2-204ENST00000467717 CYP27B1O15528 508 aa22.58■■□□□ 1.21
VARS2-204ENST00000467717 IFNL2Q8IZJ0 200 aa22.58■■□□□ 1.21
VARS2-204ENST00000467717 MARCH10Q8NA82 808 aaPredicted RBP22.58■■□□□ 1.21
VARS2-204ENST00000467717 PHKG2P15735 406 aa22.57■■□□□ 1.2
VARS2-204ENST00000467717 C1orf141Q5JVX7 400 aa22.57■■□□□ 1.2
VARS2-204ENST00000467717 AKAP4Q5JQC9 854 aa22.56■■□□□ 1.2
VARS2-204ENST00000467717 PARP4Q9UKK3 1724 aaKnown RBP22.56■■□□□ 1.2
VARS2-204ENST00000467717 NFE2L2Q16236 605 aa22.55■■□□□ 1.2
VARS2-204ENST00000467717 LRRC37A3O60309 1634 aa22.54■■□□□ 1.2
VARS2-204ENST00000467717 HSP90AB1P08238 724 aaKnown RBP22.54■■□□□ 1.2
VARS2-204ENST00000467717 WNK3Q9BYP7 1800 aa22.53■■□□□ 1.2
VARS2-204ENST00000467717 APAF1O14727 1248 aa22.53■■□□□ 1.2
VARS2-204ENST00000467717 TMPOP42166 694 aaKnown RBP22.53■■□□□ 1.2
VARS2-204ENST00000467717 NKX1-1Q15270 411 aaPredicted RBP22.53■■□□□ 1.2
VARS2-204ENST00000467717 CCDC125Q86Z20 511 aa22.53■■□□□ 1.2
VARS2-204ENST00000467717 LRP5O75197 1615 aa22.53■■□□□ 1.2
VARS2-204ENST00000467717 GNAT3A8MTJ3 354 aa22.52■■□□□ 1.2
VARS2-204ENST00000467717 DCAF5Q96JK2 942 aa22.51■■□□□ 1.19
VARS2-204ENST00000467717 PKD1L3Q7Z443 1732 aa22.51■■□□□ 1.19
VARS2-204ENST00000467717 MAP3K5Q99683 1374 aa22.5■■□□□ 1.19
VARS2-204ENST00000467717 HTATSF1O43719 755 aaKnown RBP22.5■■□□□ 1.19
VARS2-204ENST00000467717 RIPK4P57078 832 aa22.5■■□□□ 1.19
VARS2-204ENST00000467717 FAM182BQ5T319 152 aa22.5■■□□□ 1.19
VARS2-204ENST00000467717 FAM196AQ6ZSG2 479 aa22.5■■□□□ 1.19
VARS2-204ENST00000467717 RRP7AQ9Y3A4 280 aaKnown RBP22.5■■□□□ 1.19
VARS2-204ENST00000467717 MPRIPQ6WCQ1 1025 aa22.49■■□□□ 1.19
VARS2-204ENST00000467717 RTF1Q92541 710 aaKnown RBP22.49■■□□□ 1.19
VARS2-204ENST00000467717 BCL9O00512 1426 aa22.48■■□□□ 1.19
VARS2-204ENST00000467717 NEUROD2Q15784 382 aa22.48■■□□□ 1.19
VARS2-204ENST00000467717 LMOD3Q0VAK6 560 aa22.47■■□□□ 1.19
VARS2-204ENST00000467717 NCBP3Q53F19 620 aaKnown RBP22.46■■□□□ 1.19
VARS2-204ENST00000467717 RNMTO43148 476 aaKnown RBP22.45■■□□□ 1.18
VARS2-204ENST00000467717 IL17REQ8NFR9 667 aa22.45■■□□□ 1.18
VARS2-204ENST00000467717 LGR6Q9HBX8 967 aa22.45■■□□□ 1.18
VARS2-204ENST00000467717 ERVV-2B6SEH9 535 aa22.44■■□□□ 1.18
VARS2-204ENST00000467717 KDM6AO15550 1401 aaPredicted RBP22.44■■□□□ 1.18
VARS2-204ENST00000467717 NGEFQ8N5V2 710 aa22.44■■□□□ 1.18
VARS2-204ENST00000467717 MCM10Q7L590 875 aa22.43■■□□□ 1.18
VARS2-204ENST00000467717 TRIM35Q9UPQ4 493 aa22.43■■□□□ 1.18
VARS2-204ENST00000467717 BRWD3Q6RI45 1802 aa22.43■■□□□ 1.18
VARS2-204ENST00000467717 SHANK3Q9BYB0 1731 aa22.43■■□□□ 1.18
VARS2-204ENST00000467717 SENP3-EIF4A1A0A087X0R7 540 aa22.42■■□□□ 1.18
VARS2-204ENST00000467717 PRIM1P49642 420 aaKnown RBP22.42■■□□□ 1.18
VARS2-204ENST00000467717 DCTN1Q14203 1278 aa22.42■■□□□ 1.18
VARS2-204ENST00000467717 CCDC27Q2M243 656 aa22.42■■□□□ 1.18
VARS2-204ENST00000467717 ACSBG1Q96GR2 724 aa22.42■■□□□ 1.18
VARS2-204ENST00000467717 CEMIPQ8WUJ3 1361 aa22.41■■□□□ 1.18
VARS2-204ENST00000467717 CABP4P57796 275 aa22.41■■□□□ 1.18
VARS2-204ENST00000467717 SYTL4Q96C24 671 aaPredicted RBP22.41■■□□□ 1.18
VARS2-204ENST00000467717 SALL2Q9Y467 1007 aaPredicted RBP22.4■■□□□ 1.18
VARS2-204ENST00000467717 KCNQ2O43526 872 aa22.39■■□□□ 1.17
VARS2-204ENST00000467717 TEFQ10587 303 aa22.39■■□□□ 1.17
VARS2-204ENST00000467717 SLC52A2Q9HAB3 445 aa22.39■■□□□ 1.17
VARS2-204ENST00000467717 TMOD3Q9NYL9 352 aa22.39■■□□□ 1.17
VARS2-204ENST00000467717 WWC1Q8IX03 1113 aa22.38■■□□□ 1.17
VARS2-204ENST00000467717 THUMPD2Q9BTF0 503 aaKnown RBP22.38■■□□□ 1.17
VARS2-204ENST00000467717 BCL11BQ9C0K0 894 aaPredicted RBP22.38■■□□□ 1.17
VARS2-204ENST00000467717 TRIM37O94972 964 aa22.37■■□□□ 1.17
VARS2-204ENST00000467717 NFATC2IPQ8NCF5 419 aa22.37■■□□□ 1.17
VARS2-204ENST00000467717 CALD1Q05682 793 aaKnown RBP22.36■■□□□ 1.17
VARS2-204ENST00000467717 PIGBQ92521 554 aa22.36■■□□□ 1.17
VARS2-204ENST00000467717 HNRNPUQ00839 825 aaKnown RBP eCLIP22.35■■□□□ 1.17
VARS2-204ENST00000467717 PTF1AQ7RTS3 328 aa22.34■■□□□ 1.17
VARS2-204ENST00000467717 DEFB132Q7Z7B7 95 aa22.34■■□□□ 1.17
VARS2-204ENST00000467717 TAF7Q15545 349 aaPredicted RBP22.33■■□□□ 1.17
VARS2-204ENST00000467717 MRC1P22897 1456 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms