RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 TULP4Q9NRJ4 1543 aa9.8□□□□□ -0.84
CLDN4-204ENST00000466411 NHSQ6T4R5 1651 aa9.8□□□□□ -0.84
CLDN4-204ENST00000466411 USP19O94966 1318 aa9.8□□□□□ -0.84
CLDN4-204ENST00000466411 SAFB2Q14151 953 aaKnown RBP eCLIP9.79□□□□□ -0.84
CLDN4-204ENST00000466411 RBM46Q8TBY0 533 aaKnown RBP9.79□□□□□ -0.84
CLDN4-204ENST00000466411 NMRK2Q9NPI5 230 aa9.78□□□□□ -0.84
CLDN4-204ENST00000466411 CREBZFQ9NS37 354 aa9.78□□□□□ -0.84
CLDN4-204ENST00000466411 CD2APQ9Y5K6 639 aa9.78□□□□□ -0.84
CLDN4-204ENST00000466411 COL18A1P39060 1754 aa9.78□□□□□ -0.84
CLDN4-204ENST00000466411 BTAF1O14981 1849 aa9.77□□□□□ -0.84
CLDN4-204ENST00000466411 ITSN1Q15811 1721 aa9.77□□□□□ -0.85
CLDN4-204ENST00000466411 PRR29P0C7W0 189 aa9.77□□□□□ -0.85
CLDN4-204ENST00000466411 FAM161AQ3B820 660 aa9.77□□□□□ -0.85
CLDN4-204ENST00000466411 CFAP70Q5T0N1 1121 aa9.77□□□□□ -0.85
CLDN4-204ENST00000466411 NGDNQ8NEJ9 315 aaKnown RBP9.77□□□□□ -0.85
CLDN4-204ENST00000466411 QRICH2Q9H0J4 1663 aa9.77□□□□□ -0.85
CLDN4-204ENST00000466411 CICQ96RK0 1608 aaPredicted RBP9.76□□□□□ -0.85
CLDN4-204ENST00000466411 GCP02774 474 aa9.76□□□□□ -0.85
CLDN4-204ENST00000466411 FSTL1Q12841 308 aa9.76□□□□□ -0.85
CLDN4-204ENST00000466411 BRD4O60885 1362 aaPredicted RBP9.75□□□□□ -0.85
CLDN4-204ENST00000466411 SBNO2Q9Y2G9 1366 aa9.75□□□□□ -0.85
CLDN4-204ENST00000466411 ECM2O94769 699 aaPredicted RBP9.75□□□□□ -0.85
CLDN4-204ENST00000466411 ZEB1P37275 1124 aaPredicted RBP9.75□□□□□ -0.85
CLDN4-204ENST00000466411 CDCA7Q9BWT1 371 aaPredicted RBP9.75□□□□□ -0.85
CLDN4-204ENST00000466411 POGKQ9P215 609 aa9.75□□□□□ -0.85
CLDN4-204ENST00000466411 WASLO00401 505 aaPredicted RBP9.74□□□□□ -0.85
CLDN4-204ENST00000466411 MNX1P50219 401 aaPredicted RBP9.74□□□□□ -0.85
CLDN4-204ENST00000466411 HIRIP3Q9BW71 556 aaPredicted RBP9.74□□□□□ -0.85
CLDN4-204ENST00000466411 AXIN2Q9Y2T1 843 aa9.74□□□□□ -0.85
CLDN4-204ENST00000466411 KAT6BQ8WYB5 2073 aa9.74□□□□□ -0.85
CLDN4-204ENST00000466411 POLR3AO14802 1390 aaPredicted RBP9.74□□□□□ -0.85
CLDN4-204ENST00000466411 USP6P35125 1406 aa9.73□□□□□ -0.85
CLDN4-204ENST00000466411 RGS19P49795 217 aa9.73□□□□□ -0.85
CLDN4-204ENST00000466411 ACSBG1Q96GR2 724 aa9.73□□□□□ -0.85
CLDN4-204ENST00000466411 CARD11Q9BXL7 1154 aa9.73□□□□□ -0.85
CLDN4-204ENST00000466411 CENPJQ9HC77 1338 aaPredicted RBP9.73□□□□□ -0.85
CLDN4-204ENST00000466411 EXOC5O00471 708 aa9.72□□□□□ -0.85
CLDN4-204ENST00000466411 SLC27A3Q5K4L6 730 aa9.72□□□□□ -0.85
CLDN4-204ENST00000466411 TOM1L2Q6ZVM7 507 aa9.72□□□□□ -0.85
CLDN4-204ENST00000466411 COL23A1Q86Y22 540 aaPredicted RBP9.72□□□□□ -0.85
CLDN4-204ENST00000466411 WDR17Q8IZU2 1322 aa9.72□□□□□ -0.85
CLDN4-204ENST00000466411 NUBP1P53384 320 aa9.71□□□□□ -0.86
CLDN4-204ENST00000466411 KCNQ4P56696 695 aa9.71□□□□□ -0.86
CLDN4-204ENST00000466411 ABTB2Q8N961 1025 aa9.71□□□□□ -0.86
CLDN4-204ENST00000466411 TFCP2L1Q9NZI6 479 aa9.71□□□□□ -0.86
CLDN4-204ENST00000466411 CIZ1Q9ULV3 898 aaPredicted RBP9.71□□□□□ -0.86
CLDN4-204ENST00000466411 TRAK1Q9UPV9 953 aa9.71□□□□□ -0.86
CLDN4-204ENST00000466411 NUDT16Q96DE0 195 aaKnown RBP9.7□□□□□ -0.86
CLDN4-204ENST00000466411 CARD10Q9BWT7 1032 aa9.7□□□□□ -0.86
CLDN4-204ENST00000466411 IGSF1Q8N6C5 1336 aa9.7□□□□□ -0.86
CLDN4-204ENST00000466411 RGPD5Q99666 1765 aa9.7□□□□□ -0.86
CLDN4-204ENST00000466411 RGL2O15211 777 aa9.69□□□□□ -0.86
CLDN4-204ENST00000466411 ACEP12821 1306 aa9.69□□□□□ -0.86
CLDN4-204ENST00000466411 CDCA8Q53HL2 280 aa9.69□□□□□ -0.86
CLDN4-204ENST00000466411 C10orf71Q711Q0 1435 aa9.69□□□□□ -0.86
CLDN4-204ENST00000466411 MINK1Q8N4C8 1332 aaPredicted RBP9.69□□□□□ -0.86
CLDN4-204ENST00000466411 USP47Q96K76 1375 aa9.69□□□□□ -0.86
CLDN4-204ENST00000466411 PRDM10Q9NQV6 1147 aa9.69□□□□□ -0.86
CLDN4-204ENST00000466411 LY75O60449 1722 aa9.68□□□□□ -0.86
CLDN4-204ENST00000466411 EVC2Q86UK5 1308 aa9.68□□□□□ -0.86
CLDN4-204ENST00000466411 PLEKHG3A1L390 1219 aa9.68□□□□□ -0.86
CLDN4-204ENST00000466411 NBPF1Q3BBV0 1214 aa9.68□□□□□ -0.86
CLDN4-204ENST00000466411 MSL1Q68DK7 614 aa9.68□□□□□ -0.86
CLDN4-204ENST00000466411 NLRP13Q86W25 1043 aa9.68□□□□□ -0.86
CLDN4-204ENST00000466411 PUS7Q96PZ0 661 aaKnown RBP9.68□□□□□ -0.86
CLDN4-204ENST00000466411 ABCC6O95255 1503 aa9.67□□□□□ -0.86
CLDN4-204ENST00000466411 FOXN1O15353 648 aa9.67□□□□□ -0.86
CLDN4-204ENST00000466411 PDE4DIPQ5VU43 2346 aa9.67□□□□□ -0.86
CLDN4-204ENST00000466411 SLIT3O75094 1523 aa9.66□□□□□ -0.86
CLDN4-204ENST00000466411 TNRC18O15417 2968 aaPredicted RBP9.66□□□□□ -0.86
CLDN4-204ENST00000466411 EIF4G2P78344 907 aaKnown RBP eCLIP9.66□□□□□ -0.86
CLDN4-204ENST00000466411 MLLT1Q03111 559 aaPredicted RBP9.66□□□□□ -0.86
CLDN4-204ENST00000466411 KIAA1551Q9HCM1 1747 aa9.65□□□□□ -0.86
CLDN4-204ENST00000466411 ABHD8Q96I13 439 aa9.65□□□□□ -0.86
CLDN4-204ENST00000466411 PXDNLA1KZ92 1463 aa9.65□□□□□ -0.87
CLDN4-204ENST00000466411 TMF1P82094 1093 aa9.64□□□□□ -0.87
CLDN4-204ENST00000466411 ARHGEF25Q86VW2 580 aa9.64□□□□□ -0.87
CLDN4-204ENST00000466411 PPIP5K1Q6PFW1 1433 aa9.64□□□□□ -0.87
CLDN4-204ENST00000466411 C16orf71Q8IYS4 520 aaPredicted RBP9.63□□□□□ -0.87
CLDN4-204ENST00000466411 SMC1BQ8NDV3 1235 aa9.63□□□□□ -0.87
CLDN4-204ENST00000466411 NSD2O96028 1365 aa9.63□□□□□ -0.87
CLDN4-204ENST00000466411 CCDC7Q96M83 1385 aa9.63□□□□□ -0.87
CLDN4-204ENST00000466411 KCPQ6ZWJ8 1503 aa9.62□□□□□ -0.87
CLDN4-204ENST00000466411 USP54Q70EL1 1684 aa9.62□□□□□ -0.87
CLDN4-204ENST00000466411 SRPK2P78362 688 aaKnown RBP9.62□□□□□ -0.87
CLDN4-204ENST00000466411 GSE1Q14687 1217 aa9.62□□□□□ -0.87
CLDN4-204ENST00000466411 CHADLQ6NUI6 762 aa9.62□□□□□ -0.87
CLDN4-204ENST00000466411 RRAGCQ9HB90 399 aa9.62□□□□□ -0.87
CLDN4-204ENST00000466411 CCDC61Q9Y6R9 512 aa9.62□□□□□ -0.87
CLDN4-204ENST00000466411 PIK3C2AO00443 1686 aa9.61□□□□□ -0.87
CLDN4-204ENST00000466411 KIF13BQ9NQT8 1826 aa9.61□□□□□ -0.87
CLDN4-204ENST00000466411 ST20-MTHFSA0A0A6YYL1 179 aa9.61□□□□□ -0.87
CLDN4-204ENST00000466411 AMIGO3Q86WK7 504 aa9.61□□□□□ -0.87
CLDN4-204ENST00000466411 RASEFQ8IZ41 740 aa9.61□□□□□ -0.87
CLDN4-204ENST00000466411 CDK19Q9BWU1 502 aa9.61□□□□□ -0.87
CLDN4-204ENST00000466411 CPSF1Q10570 1443 aaKnown RBP9.61□□□□□ -0.87
CLDN4-204ENST00000466411 ERBB3P21860 1342 aa9.6□□□□□ -0.87
CLDN4-204ENST00000466411 BRCA1P38398 1863 aaKnown RBP9.6□□□□□ -0.87
CLDN4-204ENST00000466411 PKD1L3Q7Z443 1732 aa9.6□□□□□ -0.87
CLDN4-204ENST00000466411 ZBTB7CA1YPR0 619 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms