RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 ZGPATQ8N5A5 531 aaKnown RBP24.14■■□□□ 1.46
SDF4-205ENST00000465727 GGT6Q6P531 493 aa24.14■■□□□ 1.45
SDF4-205ENST00000465727 ATP10DQ9P241 1426 aa24.14■■□□□ 1.45
SDF4-205ENST00000465727 SDSP20132 328 aa24.13■■□□□ 1.45
SDF4-205ENST00000465727 RBM27Q9P2N5 1060 aaKnown RBP24.13■■□□□ 1.45
SDF4-205ENST00000465727 MCM2P49736 904 aa24.12■■□□□ 1.45
SDF4-205ENST00000465727 MAP2P11137 1827 aaKnown RBP24.12■■□□□ 1.45
SDF4-205ENST00000465727 POGZQ7Z3K3 1410 aa24.12■■□□□ 1.45
SDF4-205ENST00000465727 YTHDC2Q9H6S0 1430 aaKnown RBP24.12■■□□□ 1.45
SDF4-205ENST00000465727 DLG5Q8TDM6 1919 aa24.12■■□□□ 1.45
SDF4-205ENST00000465727 SYCE3A1L190 88 aa24.12■■□□□ 1.45
SDF4-205ENST00000465727 HAP1P54257 671 aaPredicted RBP24.12■■□□□ 1.45
SDF4-205ENST00000465727 PHACTR3Q96KR7 559 aa24.12■■□□□ 1.45
SDF4-205ENST00000465727 POLKQ9UBT6 870 aa24.12■■□□□ 1.45
SDF4-205ENST00000465727 CPSF1Q10570 1443 aaKnown RBP24.11■■□□□ 1.45
SDF4-205ENST00000465727 ERC2O15083 957 aa24.1■■□□□ 1.45
SDF4-205ENST00000465727 SMAP1Q8IYB5 467 aaPredicted RBP24.1■■□□□ 1.45
SDF4-205ENST00000465727 SYAP1Q96A49 352 aaPredicted RBP24.1■■□□□ 1.45
SDF4-205ENST00000465727 THUMPD2Q9BTF0 503 aaKnown RBP24.1■■□□□ 1.45
SDF4-205ENST00000465727 NUTM2DQ5VT03 806 aaPredicted RBP24.09■■□□□ 1.45
SDF4-205ENST00000465727 ATP7BP35670 1465 aa24.09■■□□□ 1.45
SDF4-205ENST00000465727 ARHGEF40Q8TER5 1519 aa24.09■■□□□ 1.45
SDF4-205ENST00000465727 MINK1Q8N4C8 1332 aaPredicted RBP24.09■■□□□ 1.45
SDF4-205ENST00000465727 CDK12Q9NYV4 1490 aaPredicted RBP24.09■■□□□ 1.45
SDF4-205ENST00000465727 STK26Q9P289 416 aa24.09■■□□□ 1.45
SDF4-205ENST00000465727 RIMS2Q9UQ26 1411 aa24.09■■□□□ 1.45
SDF4-205ENST00000465727 ELL2O00472 640 aaPredicted RBP24.08■■□□□ 1.45
SDF4-205ENST00000465727 C8orf58Q8NAV2 365 aa24.08■■□□□ 1.45
SDF4-205ENST00000465727 C16orf71Q8IYS4 520 aaPredicted RBP24.07■■□□□ 1.44
SDF4-205ENST00000465727 PRAM1Q96QH2 718 aa24.07■■□□□ 1.44
SDF4-205ENST00000465727 PRDM4Q9UKN5 801 aa24.07■■□□□ 1.44
SDF4-205ENST00000465727 KIAA2012Q0VF49 1180 aa24.07■■□□□ 1.44
SDF4-205ENST00000465727 PHF14O94880 888 aa24.06■■□□□ 1.44
SDF4-205ENST00000465727 BRD1O95696 1058 aa24.06■■□□□ 1.44
SDF4-205ENST00000465727 CEP85Q6P2H3 762 aa24.06■■□□□ 1.44
SDF4-205ENST00000465727 TSPY26PQ9H489 355 aa24.06■■□□□ 1.44
SDF4-205ENST00000465727 HMOX1P09601 288 aa24.06■■□□□ 1.44
SDF4-205ENST00000465727 OSBPL3Q9H4L5 887 aa24.05■■□□□ 1.44
SDF4-205ENST00000465727 IL13P35225 146 aa24.04■■□□□ 1.44
SDF4-205ENST00000465727 INTS4Q96HW7 963 aaKnown RBP24.04■■□□□ 1.44
SDF4-205ENST00000465727 SLC52A1Q9NWF4 448 aa24.04■■□□□ 1.44
SDF4-205ENST00000465727 CUL4AQ13619 759 aa24.04■■□□□ 1.44
SDF4-205ENST00000465727 FAM184AQ8NB25 1140 aa24.04■■□□□ 1.44
SDF4-205ENST00000465727 OTUD7AQ8TE49 926 aaPredicted RBP24.03■■□□□ 1.44
SDF4-205ENST00000465727 TMX3Q96JJ7 454 aa24.03■■□□□ 1.44
SDF4-205ENST00000465727 CDK19Q9BWU1 502 aa24.03■■□□□ 1.44
SDF4-205ENST00000465727 CABP1Q9NZU7 370 aa24.03■■□□□ 1.44
SDF4-205ENST00000465727 NSFL1CQ9UNZ2 370 aaKnown RBP24.03■■□□□ 1.44
SDF4-205ENST00000465727 RGS12O14924 1447 aa24.03■■□□□ 1.44
SDF4-205ENST00000465727 RTL1A6NKG5 1358 aa24.03■■□□□ 1.44
SDF4-205ENST00000465727 PTMAP06454 111 aaKnown RBP24.02■■□□□ 1.44
SDF4-205ENST00000465727 MYO5BQ9ULV0 1848 aa24.02■■□□□ 1.44
SDF4-205ENST00000465727 PTPRCP08575 1304 aa24.02■■□□□ 1.44
SDF4-205ENST00000465727 UVSSAQ2YD98 709 aa24.01■■□□□ 1.43
SDF4-205ENST00000465727 PRIMPOLQ96LW4 560 aa24.01■■□□□ 1.43
SDF4-205ENST00000465727 AATKQ6ZMQ8 1374 aa24.01■■□□□ 1.43
SDF4-205ENST00000465727 MYRIPQ8NFW9 859 aa24.01■■□□□ 1.43
SDF4-205ENST00000465727 TMEM131LA2VDJ0 1609 aa24■■□□□ 1.43
SDF4-205ENST00000465727 HMMRO75330 724 aa24■■□□□ 1.43
SDF4-205ENST00000465727 NEK4P51957 841 aa24■■□□□ 1.43
SDF4-205ENST00000465727 ANAPC15P60006 121 aa24■■□□□ 1.43
SDF4-205ENST00000465727 HMGN5P82970 282 aaKnown RBP24■■□□□ 1.43
SDF4-205ENST00000465727 IDI1Q13907 227 aa23.99■■□□□ 1.43
SDF4-205ENST00000465727 MCCP23508 829 aa23.99■■□□□ 1.43
SDF4-205ENST00000465727 RNF214Q8ND24 703 aa23.99■■□□□ 1.43
SDF4-205ENST00000465727 CCDC94Q9BW85 323 aaPredicted RBP23.98■■□□□ 1.43
SDF4-205ENST00000465727 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.98■■□□□ 1.432e-6■■□□□ 12.4
SDF4-205ENST00000465727 MSH6P52701 1360 aa23.98■■□□□ 1.43
SDF4-205ENST00000465727 KLHL34Q8N239 644 aa23.98■■□□□ 1.43
SDF4-205ENST00000465727 KIAA0232Q92628 1395 aa23.97■■□□□ 1.43
SDF4-205ENST00000465727 TUBGCP6Q96RT7 1819 aa23.97■■□□□ 1.43
SDF4-205ENST00000465727 EDC4Q6P2E9 1401 aaKnown RBP23.96■■□□□ 1.43
SDF4-205ENST00000465727 SSH2Q76I76 1423 aa23.96■■□□□ 1.43
SDF4-205ENST00000465727 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.96■■□□□ 1.43
SDF4-205ENST00000465727 IL17RAQ96F46 866 aa23.96■■□□□ 1.43
SDF4-205ENST00000465727 DLC1Q96QB1 1528 aa23.96■■□□□ 1.43
SDF4-205ENST00000465727 SMARCA5O60264 1052 aaPredicted RBP23.96■■□□□ 1.43
SDF4-205ENST00000465727 GTF2F1P35269 517 aaKnown RBP eCLIP23.96■■□□□ 1.431e-6■■■■□ 22.3
SDF4-205ENST00000465727 PIBF1Q8WXW3 757 aa23.96■■□□□ 1.43
SDF4-205ENST00000465727 ALKQ9UM73 1620 aa23.96■■□□□ 1.43
SDF4-205ENST00000465727 PDE1AP54750 535 aa23.95■■□□□ 1.42
SDF4-205ENST00000465727 EMILIN1Q9Y6C2 1016 aa23.94■■□□□ 1.42
SDF4-205ENST00000465727 NEO1Q92859 1461 aa23.93■■□□□ 1.42
SDF4-205ENST00000465727 CHAMP1Q96JM3 812 aa23.93■■□□□ 1.42
SDF4-205ENST00000465727 PREX1Q8TCU6 1659 aa23.92■■□□□ 1.42
SDF4-205ENST00000465727 EPB41L2O43491 1005 aaKnown RBP23.92■■□□□ 1.42
SDF4-205ENST00000465727 UTP14CQ5TAP6 766 aaKnown RBP23.92■■□□□ 1.42
SDF4-205ENST00000465727 ESYT1Q9BSJ8 1104 aa23.92■■□□□ 1.42
SDF4-205ENST00000465727 WDR33Q9C0J8 1336 aaKnown RBP23.92■■□□□ 1.42
SDF4-205ENST00000465727 LETM1O95202 739 aaPredicted RBP23.91■■□□□ 1.42
SDF4-205ENST00000465727 DNTTIP2Q5QJE6 756 aaKnown RBP23.91■■□□□ 1.42
SDF4-205ENST00000465727 FBLN1P23142 703 aa23.91■■□□□ 1.42
SDF4-205ENST00000465727 FOXD4L5Q5VV16 416 aaPredicted RBP23.91■■□□□ 1.42
SDF4-205ENST00000465727 TMEM87AQ8NBN3 555 aa23.91■■□□□ 1.42
SDF4-205ENST00000465727 FOXD4L4Q8WXT5 416 aaPredicted RBP23.91■■□□□ 1.42
SDF4-205ENST00000465727 MEIS3Q99687 375 aa23.91■■□□□ 1.42
SDF4-205ENST00000465727 FAM83GA6ND36 823 aa23.9■■□□□ 1.42
SDF4-205ENST00000465727 APBB1O00213 710 aa23.9■■□□□ 1.42
SDF4-205ENST00000465727 NOLC1Q14978 699 aaKnown RBP eCLIP23.89■■□□□ 1.413e-6■■□□□ 12.8
SDF4-205ENST00000465727 NRKQ7Z2Y5 1582 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms