RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 KIF7Q2M1P5 1343 aa30.01■■■□□ 2.4
LIME1-203ENST00000465591 PPM1GO15355 546 aaPredicted RBP30.01■■■□□ 2.39
LIME1-203ENST00000465591 POLKQ9UBT6 870 aa30.01■■■□□ 2.39
LIME1-203ENST00000465591 TNNT2P45379 298 aaPredicted RBP30■■■□□ 2.39
LIME1-203ENST00000465591 ZCRB1Q8TBF4 217 aaKnown RBP29.98■■■□□ 2.39
LIME1-203ENST00000465591 ANO8Q9HCE9 1232 aaPredicted RBP29.98■■■□□ 2.39
LIME1-203ENST00000465591 WASHC2AQ641Q2 1341 aa29.97■■■□□ 2.39
LIME1-203ENST00000465591 DOT1LQ8TEK3 1739 aa29.97■■■□□ 2.39
LIME1-203ENST00000465591 NBPF14Q5TI25 921 aa29.97■■■□□ 2.39
LIME1-203ENST00000465591 TXNRD1Q16881 649 aa29.95■■■□□ 2.39
LIME1-203ENST00000465591 NCAPD2Q15021 1401 aa29.95■■■□□ 2.38
LIME1-203ENST00000465591 RAPGEF4Q8WZA2 1011 aa29.94■■■□□ 2.38
LIME1-203ENST00000465591 NSD2O96028 1365 aa29.92■■■□□ 2.38
LIME1-203ENST00000465591 TATP17735 454 aaPredicted RBP29.91■■■□□ 2.38
LIME1-203ENST00000465591 PKD1L3Q7Z443 1732 aa29.89■■■□□ 2.38
LIME1-203ENST00000465591 EYA1Q99502 592 aa29.89■■■□□ 2.38
LIME1-203ENST00000465591 PRIM1P49642 420 aaKnown RBP29.88■■■□□ 2.37
LIME1-203ENST00000465591 KNSTRNQ9Y448 316 aa29.88■■■□□ 2.37
LIME1-203ENST00000465591 EIF4A2Q14240 407 aaKnown RBP29.87■■■□□ 2.37
LIME1-203ENST00000465591 CASZ1Q86V15 1759 aa29.86■■■□□ 2.37
LIME1-203ENST00000465591 AMER1Q5JTC6 1135 aaPredicted RBP29.86■■■□□ 2.37
LIME1-203ENST00000465591 MORC1Q86VD1 984 aa29.86■■■□□ 2.37
LIME1-203ENST00000465591 PAPPAQ13219 1627 aa29.85■■■□□ 2.37
LIME1-203ENST00000465591 SYTL4Q96C24 671 aaPredicted RBP29.85■■■□□ 2.37
LIME1-203ENST00000465591 PDGFDQ9GZP0 370 aaPredicted RBP29.84■■■□□ 2.37
LIME1-203ENST00000465591 CYP27B1O15528 508 aa29.83■■■□□ 2.37
LIME1-203ENST00000465591 TOGARAM1Q9Y4F4 1720 aa29.82■■■□□ 2.36
LIME1-203ENST00000465591 PCDH11XQ9BZA7 1347 aa29.82■■■□□ 2.36
LIME1-203ENST00000465591 PCDH11YQ9BZA8 1340 aa29.82■■■□□ 2.36
LIME1-203ENST00000465591 LRRC4BQ9NT99 713 aa29.82■■■□□ 2.36
LIME1-203ENST00000465591 PER1O15534 1290 aaPredicted RBP29.81■■■□□ 2.36
LIME1-203ENST00000465591 LY75O60449 1722 aa29.8■■■□□ 2.36
LIME1-203ENST00000465591 SLC15A2Q16348 729 aa29.79■■■□□ 2.36
LIME1-203ENST00000465591 STK32BQ9NY57 414 aa29.79■■■□□ 2.36
LIME1-203ENST00000465591 ITGB4P16144 1822 aa29.78■■■□□ 2.36
LIME1-203ENST00000465591 IGSF1Q8N6C5 1336 aa29.76■■■□□ 2.36
LIME1-203ENST00000465591 KCNQ4P56696 695 aa29.76■■■□□ 2.35
LIME1-203ENST00000465591 ZNF827Q17R98 1081 aa29.74■■■□□ 2.35
LIME1-203ENST00000465591 SPON1Q9HCB6 807 aa29.72■■■□□ 2.35
LIME1-203ENST00000465591 SPG7Q9UQ90 795 aa29.72■■■□□ 2.35
LIME1-203ENST00000465591 SLC27A3Q5K4L6 730 aa29.71■■■□□ 2.35
LIME1-203ENST00000465591 CC2D1BQ5T0F9 858 aaKnown RBP29.71■■■□□ 2.35
LIME1-203ENST00000465591 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.71■■■□□ 2.35
LIME1-203ENST00000465591 NKX1-1Q15270 411 aaPredicted RBP29.7■■■□□ 2.35
LIME1-203ENST00000465591 TUBGCP6Q96RT7 1819 aa29.7■■■□□ 2.34
LIME1-203ENST00000465591 ZBTB7AO95365 584 aa29.69■■■□□ 2.34
LIME1-203ENST00000465591 MPRIPQ6WCQ1 1025 aa29.68■■■□□ 2.34
LIME1-203ENST00000465591 AEBP1Q8IUX7 1158 aa29.68■■■□□ 2.34
LIME1-203ENST00000465591 AKT1S1Q96B36 256 aa29.68■■■□□ 2.34
LIME1-203ENST00000465591 PHKG2P15735 406 aa29.66■■■□□ 2.34
LIME1-203ENST00000465591 IL13P35225 146 aa29.66■■■□□ 2.34
LIME1-203ENST00000465591 QSER1Q2KHR3 1735 aa29.65■■■□□ 2.34
LIME1-203ENST00000465591 MTHFSP49914 203 aa29.65■■■□□ 2.34
LIME1-203ENST00000465591 CCNL1Q9UK58 526 aaPredicted RBP29.64■■■□□ 2.34
LIME1-203ENST00000465591 CNGB1Q14028 1251 aaPredicted RBP29.63■■■□□ 2.33
LIME1-203ENST00000465591 IFNL2Q8IZJ0 200 aa29.63■■■□□ 2.33
LIME1-203ENST00000465591 PIGBQ92521 554 aa29.63■■■□□ 2.33
LIME1-203ENST00000465591 ATF5Q9Y2D1 282 aaPredicted RBP29.63■■■□□ 2.33
LIME1-203ENST00000465591 PLEKHG2Q9H7P9 1386 aa29.63■■■□□ 2.33
LIME1-203ENST00000465591 NPC1L1Q9UHC9 1359 aa29.63■■■□□ 2.33
LIME1-203ENST00000465591 PTGER2P43116 358 aa29.62■■■□□ 2.33
LIME1-203ENST00000465591 PALLDQ8WX93 1383 aa29.62■■■□□ 2.33
LIME1-203ENST00000465591 TAF1LQ8IZX4 1826 aa29.61■■■□□ 2.33
LIME1-203ENST00000465591 C5P01031 1676 aa29.6■■■□□ 2.33
LIME1-203ENST00000465591 SULT6B1Q6IMI4 303 aa29.6■■■□□ 2.33
LIME1-203ENST00000465591 KDRP35968 1356 aa29.6■■■□□ 2.33
LIME1-203ENST00000465591 PNPLA7Q6ZV29 1317 aa29.58■■■□□ 2.33
LIME1-203ENST00000465591 PPP1R1BQ9UD71 204 aaPredicted RBP29.58■■■□□ 2.33
LIME1-203ENST00000465591 MTFR1LQ9H019 292 aa29.57■■■□□ 2.32
LIME1-203ENST00000465591 PLEKHO1Q53GL0 409 aaPredicted RBP29.56■■■□□ 2.32
LIME1-203ENST00000465591 SGIP1Q9BQI5 828 aa29.56■■■□□ 2.32
LIME1-203ENST00000465591 ZNF530Q6P9A1 599 aaPredicted RBP29.55■■■□□ 2.32
LIME1-203ENST00000465591 KDM6AO15550 1401 aaPredicted RBP29.54■■■□□ 2.32
LIME1-203ENST00000465591 TMOD3Q9NYL9 352 aa29.54■■■□□ 2.32
LIME1-203ENST00000465591 TFCP2L1Q9NZI6 479 aa29.54■■■□□ 2.32
LIME1-203ENST00000465591 COL3A1P02461 1466 aaPredicted RBP29.54■■■□□ 2.32
LIME1-203ENST00000465591 SMARCC1Q92922 1105 aaPredicted RBP29.53■■■□□ 2.32
LIME1-203ENST00000465591 ASAP1Q9ULH1 1129 aa29.53■■■□□ 2.32
LIME1-203ENST00000465591 AMOTQ4VCS5 1084 aa29.52■■■□□ 2.32
LIME1-203ENST00000465591 COL24A1Q17RW2 1714 aa29.51■■■□□ 2.31
LIME1-203ENST00000465591 HMOX1P09601 288 aa29.5■■■□□ 2.31
LIME1-203ENST00000465591 C4BP0C0L5 1744 aa29.5■■■□□ 2.31
LIME1-203ENST00000465591 DIAPH1O60610 1272 aaKnown RBP29.49■■■□□ 2.31
LIME1-203ENST00000465591 DCAF5Q96JK2 942 aa29.49■■■□□ 2.31
LIME1-203ENST00000465591 ATG3Q9NT62 314 aa29.48■■■□□ 2.31
LIME1-203ENST00000465591 HSP90AB1P08238 724 aaKnown RBP29.47■■■□□ 2.31
LIME1-203ENST00000465591 LOC102724428A0A0B4J2F2 783 aa29.46■■■□□ 2.31
LIME1-203ENST00000465591 ERVV-2B6SEH9 535 aa29.46■■■□□ 2.31
LIME1-203ENST00000465591 SIK1P57059 783 aa29.46■■■□□ 2.31
LIME1-203ENST00000465591 COL23A1Q86Y22 540 aaPredicted RBP29.46■■■□□ 2.31
LIME1-203ENST00000465591 SCN11AQ9UI33 1791 aa29.46■■■□□ 2.31
LIME1-203ENST00000465591 AMIGO3Q86WK7 504 aa29.45■■■□□ 2.31
LIME1-203ENST00000465591 SLC16A10Q8TF71 515 aa29.45■■■□□ 2.31
LIME1-203ENST00000465591 UBR3Q6ZT12 1888 aa29.44■■■□□ 2.3
LIME1-203ENST00000465591 C1orf141Q5JVX7 400 aa29.44■■■□□ 2.3
LIME1-203ENST00000465591 VIRMAQ69YN4 1812 aaKnown RBP29.43■■■□□ 2.3
LIME1-203ENST00000465591 ITPK1Q13572 414 aa29.43■■■□□ 2.3
LIME1-203ENST00000465591 LINC00116Q8NCU8 138 aa29.43■■■□□ 2.3
LIME1-203ENST00000465591 SMIM5Q71RC9 77 aa29.42■■■□□ 2.3
LIME1-203ENST00000465591 FHDC1Q9C0D6 1143 aaPredicted RBP29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms