RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 FYB1O15117 783 aa23.85■■□□□ 1.41
CPSF4-209ENST00000465132 SLC27A3Q5K4L6 730 aa23.85■■□□□ 1.41
CPSF4-209ENST00000465132 SYT17Q9BSW7 474 aa23.85■■□□□ 1.41
CPSF4-209ENST00000465132 RTL1A6NKG5 1358 aa23.85■■□□□ 1.41
CPSF4-209ENST00000465132 RRS1Q15050 365 aaKnown RBP23.84■■□□□ 1.41
CPSF4-209ENST00000465132 AKT1S1Q96B36 256 aa23.84■■□□□ 1.41
CPSF4-209ENST00000465132 PRIM1P49642 420 aaKnown RBP23.83■■□□□ 1.41
CPSF4-209ENST00000465132 ZCRB1Q8TBF4 217 aaKnown RBP23.83■■□□□ 1.41
CPSF4-209ENST00000465132 GGNBP2Q9H3C7 697 aa23.83■■□□□ 1.41
CPSF4-209ENST00000465132 KAT6BQ8WYB5 2073 aa23.83■■□□□ 1.41
CPSF4-209ENST00000465132 MEGF6O75095 1541 aa23.83■■□□□ 1.41
CPSF4-209ENST00000465132 SYTL4Q96C24 671 aaPredicted RBP23.82■■□□□ 1.4
CPSF4-209ENST00000465132 ARXQ96QS3 562 aa23.82■■□□□ 1.4
CPSF4-209ENST00000465132 NBPF6Q5VWK0 638 aa23.8■■□□□ 1.4
CPSF4-209ENST00000465132 NBPF4Q96M43 638 aa23.8■■□□□ 1.4
CPSF4-209ENST00000465132 NSD2O96028 1365 aa23.79■■□□□ 1.4
CPSF4-209ENST00000465132 RGPD2P0DJD1 1756 aa23.79■■□□□ 1.4
CPSF4-209ENST00000465132 PANK3Q9H999 370 aa23.79■■□□□ 1.4
CPSF4-209ENST00000465132 KNSTRNQ9Y448 316 aa23.79■■□□□ 1.4
CPSF4-209ENST00000465132 SHANK3Q9BYB0 1731 aa23.78■■□□□ 1.4
CPSF4-209ENST00000465132 DOT1LQ8TEK3 1739 aa23.77■■□□□ 1.4
CPSF4-209ENST00000465132 KCNQ4P56696 695 aa23.77■■□□□ 1.4
CPSF4-209ENST00000465132 USHBP1Q8N6Y0 703 aa23.77■■□□□ 1.4
CPSF4-209ENST00000465132 SLC16A10Q8TF71 515 aa23.77■■□□□ 1.4
CPSF4-209ENST00000465132 CGNL1Q0VF96 1302 aa23.77■■□□□ 1.4
CPSF4-209ENST00000465132 MAP3K5Q99683 1374 aa23.77■■□□□ 1.4
CPSF4-209ENST00000465132 SMG6Q86US8 1419 aaKnown RBP23.76■■□□□ 1.39
CPSF4-209ENST00000465132 PNPLA7Q6ZV29 1317 aa23.76■■□□□ 1.39
CPSF4-209ENST00000465132 RAPGEF4Q8WZA2 1011 aa23.75■■□□□ 1.39
CPSF4-209ENST00000465132 TFCP2L1Q9NZI6 479 aa23.75■■□□□ 1.39
CPSF4-209ENST00000465132 INSRP06213 1382 aa23.75■■□□□ 1.39
CPSF4-209ENST00000465132 HSP90AB2PQ58FF8 381 aa23.74■■□□□ 1.39
CPSF4-209ENST00000465132 NSD3Q9BZ95 1437 aa23.74■■□□□ 1.39
CPSF4-209ENST00000465132 QSER1Q2KHR3 1735 aa23.73■■□□□ 1.39
CPSF4-209ENST00000465132 FLT4P35916 1363 aa23.73■■□□□ 1.39
CPSF4-209ENST00000465132 TATP17735 454 aaPredicted RBP23.72■■□□□ 1.39
CPSF4-209ENST00000465132 CARD14Q9BXL6 1004 aa23.72■■□□□ 1.39
CPSF4-209ENST00000465132 CCNL1Q9UK58 526 aaPredicted RBP23.72■■□□□ 1.39
CPSF4-209ENST00000465132 KIF24Q5T7B8 1368 aa23.72■■□□□ 1.39
CPSF4-209ENST00000465132 LY75O60449 1722 aa23.72■■□□□ 1.39
CPSF4-209ENST00000465132 KIF20BQ96Q89 1820 aa23.7■■□□□ 1.39
CPSF4-209ENST00000465132 POLD1P28340 1107 aa23.7■■□□□ 1.38
CPSF4-209ENST00000465132 DDX10Q13206 875 aaKnown RBP23.69■■□□□ 1.38
CPSF4-209ENST00000465132 PCDH11XQ9BZA7 1347 aa23.68■■□□□ 1.38
CPSF4-209ENST00000465132 PCDH11YQ9BZA8 1340 aa23.68■■□□□ 1.38
CPSF4-209ENST00000465132 ZNF784Q8NCA9 323 aaPredicted RBP23.68■■□□□ 1.38
CPSF4-209ENST00000465132 COL24A1Q17RW2 1714 aa23.67■■□□□ 1.38
CPSF4-209ENST00000465132 EMILIN1Q9Y6C2 1016 aa23.67■■□□□ 1.38
CPSF4-209ENST00000465132 TUBGCP6Q96RT7 1819 aa23.67■■□□□ 1.38
CPSF4-209ENST00000465132 NPC1L1Q9UHC9 1359 aa23.65■■□□□ 1.38
CPSF4-209ENST00000465132 KLHL34Q8N239 644 aa23.65■■□□□ 1.38
CPSF4-209ENST00000465132 CYP27B1O15528 508 aa23.64■■□□□ 1.37
CPSF4-209ENST00000465132 GPR162Q16538 588 aa23.64■■□□□ 1.37
CPSF4-209ENST00000465132 UTRNP46939 3433 aa23.64■■□□□ 1.37
CPSF4-209ENST00000465132 PER1O15534 1290 aaPredicted RBP23.63■■□□□ 1.37
CPSF4-209ENST00000465132 COL23A1Q86Y22 540 aaPredicted RBP23.63■■□□□ 1.37
CPSF4-209ENST00000465132 ANKRD26Q9UPS8 1709 aa23.62■■□□□ 1.37
CPSF4-209ENST00000465132 MSH5O43196 834 aa23.62■■□□□ 1.37
CPSF4-209ENST00000465132 MPRIPQ6WCQ1 1025 aa23.61■■□□□ 1.37
CPSF4-209ENST00000465132 PALLDQ8WX93 1383 aa23.61■■□□□ 1.37
CPSF4-209ENST00000465132 NCAPD2Q15021 1401 aa23.6■■□□□ 1.37
CPSF4-209ENST00000465132 PPM1GO15355 546 aaPredicted RBP23.6■■□□□ 1.37
CPSF4-209ENST00000465132 HMGB2P26583 209 aaKnown RBP23.59■■□□□ 1.37
CPSF4-209ENST00000465132 NLGN2Q8NFZ4 835 aa23.59■■□□□ 1.37
CPSF4-209ENST00000465132 AMER1Q5JTC6 1135 aaPredicted RBP23.58■■□□□ 1.37
CPSF4-209ENST00000465132 MORC1Q86VD1 984 aa23.58■■□□□ 1.37
CPSF4-209ENST00000465132 CHD4Q14839 1912 aa23.58■■□□□ 1.37
CPSF4-209ENST00000465132 C5P01031 1676 aa23.57■■□□□ 1.36
CPSF4-209ENST00000465132 PKD1L3Q7Z443 1732 aa23.56■■□□□ 1.36
CPSF4-209ENST00000465132 NKX1-1Q15270 411 aaPredicted RBP23.56■■□□□ 1.36
CPSF4-209ENST00000465132 PELP1Q8IZL8 1130 aaKnown RBP23.56■■□□□ 1.36
CPSF4-209ENST00000465132 SMARCC1Q92922 1105 aaPredicted RBP23.56■■□□□ 1.36
CPSF4-209ENST00000465132 TOGARAM1Q9Y4F4 1720 aa23.56■■□□□ 1.36
CPSF4-209ENST00000465132 MSL1Q68DK7 614 aa23.55■■□□□ 1.36
CPSF4-209ENST00000465132 FLAD1Q8NFF5 587 aa23.55■■□□□ 1.36
CPSF4-209ENST00000465132 PIGBQ92521 554 aa23.55■■□□□ 1.36
CPSF4-209ENST00000465132 EYA1Q99502 592 aa23.55■■□□□ 1.36
CPSF4-209ENST00000465132 SPG7Q9UQ90 795 aa23.55■■□□□ 1.36
CPSF4-209ENST00000465132 POLKQ9UBT6 870 aa23.54■■□□□ 1.36
CPSF4-209ENST00000465132 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.53■■□□□ 1.36
CPSF4-209ENST00000465132 CC2D1BQ5T0F9 858 aaKnown RBP23.52■■□□□ 1.36
CPSF4-209ENST00000465132 RALBP1Q15311 655 aa23.51■■□□□ 1.35
CPSF4-209ENST00000465132 ITGB4P16144 1822 aa23.51■■□□□ 1.35
CPSF4-209ENST00000465132 TAF1LQ8IZX4 1826 aa23.5■■□□□ 1.35
CPSF4-209ENST00000465132 AK7Q96M32 723 aa23.5■■□□□ 1.35
CPSF4-209ENST00000465132 YBX3P16989 372 aaKnown RBP eCLIP23.49■■□□□ 1.35
CPSF4-209ENST00000465132 C4BP0C0L5 1744 aa23.49■■□□□ 1.35
CPSF4-209ENST00000465132 MAP2P11137 1827 aaKnown RBP23.48■■□□□ 1.35
CPSF4-209ENST00000465132 AMIGO3Q86WK7 504 aa23.48■■□□□ 1.35
CPSF4-209ENST00000465132 ANP32CO43423 234 aa23.47■■□□□ 1.35
CPSF4-209ENST00000465132 GRIN3BO60391 1043 aa23.47■■□□□ 1.35
CPSF4-209ENST00000465132 PHKG2P15735 406 aa23.47■■□□□ 1.35
CPSF4-209ENST00000465132 TNNT2P45379 298 aaPredicted RBP23.47■■□□□ 1.35
CPSF4-209ENST00000465132 EIF4A2Q14240 407 aaKnown RBP23.47■■□□□ 1.35
CPSF4-209ENST00000465132 IFNL2Q8IZJ0 200 aa23.47■■□□□ 1.35
CPSF4-209ENST00000465132 TMOD3Q9NYL9 352 aa23.47■■□□□ 1.35
CPSF4-209ENST00000465132 CD2APQ9Y5K6 639 aa23.47■■□□□ 1.35
CPSF4-209ENST00000465132 LOC102724428A0A0B4J2F2 783 aa23.46■■□□□ 1.35
CPSF4-209ENST00000465132 SIK1P57059 783 aa23.46■■□□□ 1.35
CPSF4-209ENST00000465132 C1QTNF8P60827 252 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 153 ms