RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 MEGF6O75095 1541 aa31.7■■■□□ 2.67
USP4-208ENST00000464168 RTL1A6NKG5 1358 aa31.7■■■□□ 2.67
USP4-208ENST00000464168 KCNQ4P56696 695 aa31.7■■■□□ 2.67
USP4-208ENST00000464168 NSD2O96028 1365 aa31.68■■■□□ 2.66
USP4-208ENST00000464168 USP47Q96K76 1375 aa31.68■■■□□ 2.66
USP4-208ENST00000464168 SLC16A10Q8TF71 515 aa31.67■■■□□ 2.66
USP4-208ENST00000464168 MAP3K5Q99683 1374 aa31.67■■■□□ 2.66
USP4-208ENST00000464168 RGPD2P0DJD1 1756 aa31.66■■■□□ 2.66
USP4-208ENST00000464168 PNPLA7Q6ZV29 1317 aa31.66■■■□□ 2.66
USP4-208ENST00000464168 USHBP1Q8N6Y0 703 aa31.65■■■□□ 2.66
USP4-208ENST00000464168 TFCP2L1Q9NZI6 479 aa31.64■■■□□ 2.66
USP4-208ENST00000464168 CGNL1Q0VF96 1302 aa31.62■■■□□ 2.65
USP4-208ENST00000464168 SHANK3Q9BYB0 1731 aa31.62■■■□□ 2.65
USP4-208ENST00000464168 DOT1LQ8TEK3 1739 aa31.61■■■□□ 2.65
USP4-208ENST00000464168 HSP90AB2PQ58FF8 381 aa31.61■■■□□ 2.65
USP4-208ENST00000464168 RAPGEF4Q8WZA2 1011 aa31.61■■■□□ 2.65
USP4-208ENST00000464168 CDCA8Q53HL2 280 aa31.6■■■□□ 2.65
USP4-208ENST00000464168 ZNF784Q8NCA9 323 aaPredicted RBP31.6■■■□□ 2.65
USP4-208ENST00000464168 TRIM26Q12899 539 aaPredicted RBP31.59■■■□□ 2.65
USP4-208ENST00000464168 CCNL1Q9UK58 526 aaPredicted RBP31.59■■■□□ 2.65
USP4-208ENST00000464168 SMG6Q86US8 1419 aaKnown RBP31.58■■■□□ 2.65
USP4-208ENST00000464168 INSRP06213 1382 aa31.58■■■□□ 2.65
USP4-208ENST00000464168 CARD14Q9BXL6 1004 aa31.58■■■□□ 2.65
USP4-208ENST00000464168 QSER1Q2KHR3 1735 aa31.58■■■□□ 2.65
USP4-208ENST00000464168 POLD1P28340 1107 aa31.57■■■□□ 2.64
USP4-208ENST00000464168 LY75O60449 1722 aa31.56■■■□□ 2.64
USP4-208ENST00000464168 TATP17735 454 aaPredicted RBP31.56■■■□□ 2.64
USP4-208ENST00000464168 FLT4P35916 1363 aa31.55■■■□□ 2.64
USP4-208ENST00000464168 GOLGB1Q14789 3259 aaKnown RBP31.54■■■□□ 2.64
USP4-208ENST00000464168 KIF24Q5T7B8 1368 aa31.54■■■□□ 2.64
USP4-208ENST00000464168 KLHL34Q8N239 644 aa31.52■■■□□ 2.64
USP4-208ENST00000464168 TUBGCP6Q96RT7 1819 aa31.52■■■□□ 2.64
USP4-208ENST00000464168 GPR162Q16538 588 aa31.51■■■□□ 2.63
USP4-208ENST00000464168 COL24A1Q17RW2 1714 aa31.51■■■□□ 2.63
USP4-208ENST00000464168 PCDH11XQ9BZA7 1347 aa31.5■■■□□ 2.63
USP4-208ENST00000464168 PCDH11YQ9BZA8 1340 aa31.5■■■□□ 2.63
USP4-208ENST00000464168 COL23A1Q86Y22 540 aaPredicted RBP31.5■■■□□ 2.63
USP4-208ENST00000464168 EMILIN1Q9Y6C2 1016 aa31.49■■■□□ 2.63
USP4-208ENST00000464168 CYP27B1O15528 508 aa31.48■■■□□ 2.63
USP4-208ENST00000464168 KIF20BQ96Q89 1820 aa31.47■■■□□ 2.63
USP4-208ENST00000464168 NSD3Q9BZ95 1437 aa31.47■■■□□ 2.63
USP4-208ENST00000464168 MSH5O43196 834 aa31.46■■■□□ 2.63
USP4-208ENST00000464168 NLGN2Q8NFZ4 835 aa31.46■■■□□ 2.63
USP4-208ENST00000464168 CHD4Q14839 1912 aa31.45■■■□□ 2.63
USP4-208ENST00000464168 MPRIPQ6WCQ1 1025 aa31.45■■■□□ 2.63
USP4-208ENST00000464168 PALLDQ8WX93 1383 aa31.42■■■□□ 2.62
USP4-208ENST00000464168 PPM1GO15355 546 aaPredicted RBP31.41■■■□□ 2.62
USP4-208ENST00000464168 TIMELESSQ9UNS1 1208 aa31.41■■■□□ 2.62
USP4-208ENST00000464168 PELP1Q8IZL8 1130 aaKnown RBP31.4■■■□□ 2.62
USP4-208ENST00000464168 MSL1Q68DK7 614 aa31.39■■■□□ 2.62
USP4-208ENST00000464168 NCAPD2Q15021 1401 aa31.39■■■□□ 2.62
USP4-208ENST00000464168 HMGB2P26583 209 aaKnown RBP31.38■■■□□ 2.61
USP4-208ENST00000464168 WASHC2AQ641Q2 1341 aa31.38■■■□□ 2.61
USP4-208ENST00000464168 NKX1-1Q15270 411 aaPredicted RBP31.37■■■□□ 2.61
USP4-208ENST00000464168 PIGBQ92521 554 aa31.36■■■□□ 2.61
USP4-208ENST00000464168 SMARCC1Q92922 1105 aaPredicted RBP31.36■■■□□ 2.61
USP4-208ENST00000464168 FLAD1Q8NFF5 587 aa31.35■■■□□ 2.61
USP4-208ENST00000464168 EYA1Q99502 592 aa31.35■■■□□ 2.61
USP4-208ENST00000464168 C5P01031 1676 aa31.35■■■□□ 2.61
USP4-208ENST00000464168 SPG7Q9UQ90 795 aa31.34■■■□□ 2.61
USP4-208ENST00000464168 POLKQ9UBT6 870 aa31.33■■■□□ 2.61
USP4-208ENST00000464168 PKD1L3Q7Z443 1732 aa31.32■■■□□ 2.61
USP4-208ENST00000464168 TOGARAM1Q9Y4F4 1720 aa31.32■■■□□ 2.61
USP4-208ENST00000464168 YBX3P16989 372 aaKnown RBP eCLIP31.32■■■□□ 2.6
USP4-208ENST00000464168 AMIGO3Q86WK7 504 aa31.31■■■□□ 2.6
USP4-208ENST00000464168 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.31■■■□□ 2.63e-7■□□□□ 11.2
USP4-208ENST00000464168 ANKRD26Q9UPS8 1709 aa31.29■■■□□ 2.6
USP4-208ENST00000464168 C1QTNF8P60827 252 aa31.29■■■□□ 2.6
USP4-208ENST00000464168 ITGB4P16144 1822 aa31.28■■■□□ 2.6
USP4-208ENST00000464168 TAF1LQ8IZX4 1826 aa31.28■■■□□ 2.6
USP4-208ENST00000464168 GRIN3BO60391 1043 aa31.28■■■□□ 2.6
USP4-208ENST00000464168 AK7Q96M32 723 aa31.28■■■□□ 2.6
USP4-208ENST00000464168 CD2APQ9Y5K6 639 aa31.27■■■□□ 2.6
USP4-208ENST00000464168 SMIM5Q71RC9 77 aa31.26■■■□□ 2.59
USP4-208ENST00000464168 C4BP0C0L5 1744 aa31.26■■■□□ 2.59
USP4-208ENST00000464168 CLSPNQ9HAW4 1339 aa31.25■■■□□ 2.59
USP4-208ENST00000464168 LOC102724428A0A0B4J2F2 783 aa31.25■■■□□ 2.59
USP4-208ENST00000464168 SIK1P57059 783 aa31.25■■■□□ 2.59
USP4-208ENST00000464168 POLR3GLQ9BT43 218 aa31.25■■■□□ 2.59
USP4-208ENST00000464168 MAP2P11137 1827 aaKnown RBP31.24■■■□□ 2.59
USP4-208ENST00000464168 EIF4A2Q14240 407 aaKnown RBP31.24■■■□□ 2.59
USP4-208ENST00000464168 TMOD3Q9NYL9 352 aa31.24■■■□□ 2.59
USP4-208ENST00000464168 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.23■■■□□ 2.59
USP4-208ENST00000464168 PHF14O94880 888 aa31.23■■■□□ 2.59
USP4-208ENST00000464168 PHKG2P15735 406 aa31.23■■■□□ 2.59
USP4-208ENST00000464168 TNNT2P45379 298 aaPredicted RBP31.23■■■□□ 2.59
USP4-208ENST00000464168 IFNL2Q8IZJ0 200 aa31.23■■■□□ 2.59
USP4-208ENST00000464168 LINC00116Q8NCU8 138 aa31.23■■■□□ 2.59
USP4-208ENST00000464168 ASAP1Q9ULH1 1129 aa31.23■■■□□ 2.59
USP4-208ENST00000464168 PCGF6Q9BYE7 350 aa31.22■■■□□ 2.59
USP4-208ENST00000464168 SSFA2P28290 1259 aa31.19■■■□□ 2.58
USP4-208ENST00000464168 ITPK1Q13572 414 aa31.19■■■□□ 2.58
USP4-208ENST00000464168 SENP3-EIF4A1A0A087X0R7 540 aa31.18■■■□□ 2.58
USP4-208ENST00000464168 UBR3Q6ZT12 1888 aa31.17■■■□□ 2.58
USP4-208ENST00000464168 GIGYF1O75420 1035 aaPredicted RBP31.17■■■□□ 2.58
USP4-208ENST00000464168 ATG3Q9NT62 314 aa31.17■■■□□ 2.58
USP4-208ENST00000464168 ATP6V1AP38606 617 aa31.15■■■□□ 2.58
USP4-208ENST00000464168 PANK3Q9H999 370 aa31.14■■■□□ 2.58
USP4-208ENST00000464168 IGSF1Q8N6C5 1336 aa31.14■■■□□ 2.58
USP4-208ENST00000464168 GNPATO15228 680 aa31.13■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms