RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 PPM1GO15355 546 aaPredicted RBP26.06■■□□□ 1.76
SF3A1-205ENST00000463818 MEGF6O75095 1541 aa26.05■■□□□ 1.76
SF3A1-205ENST00000463818 ZBTB7AO95365 584 aa26.05■■□□□ 1.76
SF3A1-205ENST00000463818 TATP17735 454 aaPredicted RBP26.05■■□□□ 1.76
SF3A1-205ENST00000463818 NHSQ6T4R5 1651 aa26.04■■□□□ 1.76
SF3A1-205ENST00000463818 FAM208AQ9UK61 1670 aaKnown RBP26.04■■□□□ 1.76
SF3A1-205ENST00000463818 LRRC4BQ9NT99 713 aa26.04■■□□□ 1.76
SF3A1-205ENST00000463818 ATF5Q9Y2D1 282 aaPredicted RBP26.02■■□□□ 1.76
SF3A1-205ENST00000463818 MYOM1P52179 1685 aa26.02■■□□□ 1.76
SF3A1-205ENST00000463818 KAT6BQ8WYB5 2073 aa26.02■■□□□ 1.76
SF3A1-205ENST00000463818 PANK3Q9H999 370 aa26.01■■□□□ 1.75
SF3A1-205ENST00000463818 WASHC2AQ641Q2 1341 aa26■■□□□ 1.75
SF3A1-205ENST00000463818 POLKQ9UBT6 870 aa26■■□□□ 1.75
SF3A1-205ENST00000463818 SLC27A3Q5K4L6 730 aa25.99■■□□□ 1.75
SF3A1-205ENST00000463818 RGPD2P0DJD1 1756 aa25.99■■□□□ 1.75
SF3A1-205ENST00000463818 KIF20BQ96Q89 1820 aa25.98■■□□□ 1.75
SF3A1-205ENST00000463818 ZNF827Q17R98 1081 aa25.98■■□□□ 1.75
SF3A1-205ENST00000463818 PTGER2P43116 358 aa25.97■■□□□ 1.75
SF3A1-205ENST00000463818 TNNT2P45379 298 aaPredicted RBP25.97■■□□□ 1.75
SF3A1-205ENST00000463818 KCNQ4P56696 695 aa25.96■■□□□ 1.75
SF3A1-205ENST00000463818 BTAF1O14981 1849 aa25.95■■□□□ 1.75
SF3A1-205ENST00000463818 MTFR1LQ9H019 292 aa25.95■■□□□ 1.74
SF3A1-205ENST00000463818 NSD2O96028 1365 aa25.95■■□□□ 1.74
SF3A1-205ENST00000463818 PCDH11XQ9BZA7 1347 aa25.94■■□□□ 1.74
SF3A1-205ENST00000463818 PCDH11YQ9BZA8 1340 aa25.94■■□□□ 1.74
SF3A1-205ENST00000463818 AKT1S1Q96B36 256 aa25.94■■□□□ 1.74
SF3A1-205ENST00000463818 EYA1Q99502 592 aa25.94■■□□□ 1.74
SF3A1-205ENST00000463818 CYP27B1O15528 508 aa25.93■■□□□ 1.74
SF3A1-205ENST00000463818 CASZ1Q86V15 1759 aa25.92■■□□□ 1.74
SF3A1-205ENST00000463818 CCNL1Q9UK58 526 aaPredicted RBP25.9■■□□□ 1.74
SF3A1-205ENST00000463818 SGIP1Q9BQI5 828 aa25.89■■□□□ 1.74
SF3A1-205ENST00000463818 EIF4A2Q14240 407 aaKnown RBP25.88■■□□□ 1.73
SF3A1-205ENST00000463818 MPRIPQ6WCQ1 1025 aa25.88■■□□□ 1.73
SF3A1-205ENST00000463818 TFCP2L1Q9NZI6 479 aa25.88■■□□□ 1.73
SF3A1-205ENST00000463818 SPG7Q9UQ90 795 aa25.88■■□□□ 1.73
SF3A1-205ENST00000463818 DCAF8L1A6NGE4 600 aa25.87■■□□□ 1.73
SF3A1-205ENST00000463818 PAPPAQ13219 1627 aa25.87■■□□□ 1.73
SF3A1-205ENST00000463818 SHANK3Q9BYB0 1731 aa25.86■■□□□ 1.73
SF3A1-205ENST00000463818 MORC1Q86VD1 984 aa25.86■■□□□ 1.73
SF3A1-205ENST00000463818 NCAPD2Q15021 1401 aa25.86■■□□□ 1.73
SF3A1-205ENST00000463818 NKX1-1Q15270 411 aaPredicted RBP25.85■■□□□ 1.73
SF3A1-205ENST00000463818 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.85■■□□□ 1.73
SF3A1-205ENST00000463818 KNSTRNQ9Y448 316 aa25.85■■□□□ 1.73
SF3A1-205ENST00000463818 SLC16A10Q8TF71 515 aa25.84■■□□□ 1.73
SF3A1-205ENST00000463818 PNPLA7Q6ZV29 1317 aa25.84■■□□□ 1.73
SF3A1-205ENST00000463818 DOT1LQ8TEK3 1739 aa25.83■■□□□ 1.73
SF3A1-205ENST00000463818 ARXQ96QS3 562 aa25.83■■□□□ 1.73
SF3A1-205ENST00000463818 SYT17Q9BSW7 474 aa25.83■■□□□ 1.73
SF3A1-205ENST00000463818 FHDC1Q9C0D6 1143 aaPredicted RBP25.83■■□□□ 1.73
SF3A1-205ENST00000463818 MAP2P11137 1827 aaKnown RBP25.81■■□□□ 1.72
SF3A1-205ENST00000463818 PIGBQ92521 554 aa25.81■■□□□ 1.72
SF3A1-205ENST00000463818 IFNL2Q8IZJ0 200 aa25.79■■□□□ 1.72
SF3A1-205ENST00000463818 SMARCC1Q92922 1105 aaPredicted RBP25.79■■□□□ 1.72
SF3A1-205ENST00000463818 KIF7Q2M1P5 1343 aa25.79■■□□□ 1.72
SF3A1-205ENST00000463818 PHKG2P15735 406 aa25.78■■□□□ 1.72
SF3A1-205ENST00000463818 PALLDQ8WX93 1383 aa25.78■■□□□ 1.72
SF3A1-205ENST00000463818 ANKRD26Q9UPS8 1709 aa25.77■■□□□ 1.72
SF3A1-205ENST00000463818 IGSF1Q8N6C5 1336 aa25.77■■□□□ 1.72
SF3A1-205ENST00000463818 MSH5O43196 834 aa25.76■■□□□ 1.71
SF3A1-205ENST00000463818 HMGB2P26583 209 aaKnown RBP25.76■■□□□ 1.71
SF3A1-205ENST00000463818 YY1P25490 414 aa25.75■■□□□ 1.71
SF3A1-205ENST00000463818 POLD1P28340 1107 aa25.75■■□□□ 1.71
SF3A1-205ENST00000463818 AMER1Q5JTC6 1135 aaPredicted RBP25.75■■□□□ 1.71
SF3A1-205ENST00000463818 COL23A1Q86Y22 540 aaPredicted RBP25.75■■□□□ 1.71
SF3A1-205ENST00000463818 TMOD3Q9NYL9 352 aa25.74■■□□□ 1.71
SF3A1-205ENST00000463818 LY75O60449 1722 aa25.74■■□□□ 1.71
SF3A1-205ENST00000463818 PLEKHO1Q53GL0 409 aaPredicted RBP25.72■■□□□ 1.71
SF3A1-205ENST00000463818 PKD1L3Q7Z443 1732 aa25.71■■□□□ 1.71
SF3A1-205ENST00000463818 ASAP1Q9ULH1 1129 aa25.7■■□□□ 1.7
SF3A1-205ENST00000463818 PER1O15534 1290 aaPredicted RBP25.69■■□□□ 1.7
SF3A1-205ENST00000463818 AEBP1Q8IUX7 1158 aa25.69■■□□□ 1.7
SF3A1-205ENST00000463818 FLAD1Q8NFF5 587 aa25.69■■□□□ 1.7
SF3A1-205ENST00000463818 LOC102724428A0A0B4J2F2 783 aa25.68■■□□□ 1.7
SF3A1-205ENST00000463818 SIK1P57059 783 aa25.68■■□□□ 1.7
SF3A1-205ENST00000463818 KLHL34Q8N239 644 aa25.68■■□□□ 1.7
SF3A1-205ENST00000463818 MAP3K5Q99683 1374 aa25.68■■□□□ 1.7
SF3A1-205ENST00000463818 PLEKHG2Q9H7P9 1386 aa25.68■■□□□ 1.7
SF3A1-205ENST00000463818 HSP90AB1P08238 724 aaKnown RBP25.67■■□□□ 1.7
SF3A1-205ENST00000463818 IL13P35225 146 aa25.67■■□□□ 1.7
SF3A1-205ENST00000463818 AMOTQ4VCS5 1084 aa25.67■■□□□ 1.7
SF3A1-205ENST00000463818 SULT6B1Q6IMI4 303 aa25.67■■□□□ 1.7
SF3A1-205ENST00000463818 AK7Q96M32 723 aa25.67■■□□□ 1.7
SF3A1-205ENST00000463818 ERVV-2B6SEH9 535 aa25.66■■□□□ 1.7
SF3A1-205ENST00000463818 ZNF530Q6P9A1 599 aaPredicted RBP25.66■■□□□ 1.7
SF3A1-205ENST00000463818 ATG3Q9NT62 314 aa25.66■■□□□ 1.7
SF3A1-205ENST00000463818 TOGARAM1Q9Y4F4 1720 aa25.66■■□□□ 1.7
SF3A1-205ENST00000463818 MSL1Q68DK7 614 aa25.65■■□□□ 1.7
SF3A1-205ENST00000463818 DCAF5Q96JK2 942 aa25.65■■□□□ 1.7
SF3A1-205ENST00000463818 QSER1Q2KHR3 1735 aa25.64■■□□□ 1.7
SF3A1-205ENST00000463818 MTHFSP49914 203 aa25.64■■□□□ 1.7
SF3A1-205ENST00000463818 CC2D1BQ5T0F9 858 aaKnown RBP25.64■■□□□ 1.7
SF3A1-205ENST00000463818 ATP6V1AP38606 617 aa25.63■■□□□ 1.69
SF3A1-205ENST00000463818 SMIM5Q71RC9 77 aa25.63■■□□□ 1.69
SF3A1-205ENST00000463818 LINC00116Q8NCU8 138 aa25.63■■□□□ 1.69
SF3A1-205ENST00000463818 ITPK1Q13572 414 aa25.62■■□□□ 1.69
SF3A1-205ENST00000463818 AMIGO3Q86WK7 504 aa25.62■■□□□ 1.69
SF3A1-205ENST00000463818 ITGB4P16144 1822 aa25.62■■□□□ 1.69
SF3A1-205ENST00000463818 TUBGCP6Q96RT7 1819 aa25.6■■□□□ 1.69
SF3A1-205ENST00000463818 PHF14O94880 888 aa25.6■■□□□ 1.69
SF3A1-205ENST00000463818 CABP4P57796 275 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms