RNA–Protein interactions for RNA: ENST00000463632.1

RPA3-206, Transcript of replication protein A3, humanhuman

TSL 5

Gene RPA3, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-206ENST00000463632 NBPF4Q96M43 638 aa17.14■□□□□ 0.33
RPA3-206ENST00000463632 RGPD3A6NKT7 1758 aaPredicted RBP17.13■□□□□ 0.33
RPA3-206ENST00000463632 RGPD4Q7Z3J3 1758 aa17.13■□□□□ 0.33
RPA3-206ENST00000463632 PELP1Q8IZL8 1130 aaKnown RBP17.13■□□□□ 0.33
RPA3-206ENST00000463632 PCGF6Q9BYE7 350 aa17.13■□□□□ 0.33
RPA3-206ENST00000463632 CCNL1Q9UK58 526 aaPredicted RBP17.12■□□□□ 0.33
RPA3-206ENST00000463632 GPR162Q16538 588 aa17.11■□□□□ 0.33
RPA3-206ENST00000463632 HSP90AB2PQ58FF8 381 aa17.11■□□□□ 0.33
RPA3-206ENST00000463632 LTN1O94822 1766 aa17.1■□□□□ 0.33
RPA3-206ENST00000463632 AKT1S1Q96B36 256 aa17.1■□□□□ 0.33
RPA3-206ENST00000463632 RTL1A6NKG5 1358 aa17.1■□□□□ 0.33
RPA3-206ENST00000463632 NHSQ6T4R5 1651 aa17.1■□□□□ 0.33
RPA3-206ENST00000463632 SLC16A10Q8TF71 515 aa17.09■□□□□ 0.33
RPA3-206ENST00000463632 SGIP1Q9BQI5 828 aa17.09■□□□□ 0.33
RPA3-206ENST00000463632 USP54Q70EL1 1684 aa17.08■□□□□ 0.32
RPA3-206ENST00000463632 CGNL1Q0VF96 1302 aa17.08■□□□□ 0.32
RPA3-206ENST00000463632 CASZ1Q86V15 1759 aa17.07■□□□□ 0.32
RPA3-206ENST00000463632 MEGF6O75095 1541 aa17.07■□□□□ 0.32
RPA3-206ENST00000463632 PNPLA7Q6ZV29 1317 aa17.06■□□□□ 0.32
RPA3-206ENST00000463632 MPRIPQ6WCQ1 1025 aa17.06■□□□□ 0.32
RPA3-206ENST00000463632 EMILIN1Q9Y6C2 1016 aa17.06■□□□□ 0.32
RPA3-206ENST00000463632 KAT6BQ8WYB5 2073 aa17.06■□□□□ 0.32
RPA3-206ENST00000463632 FLT4P35916 1363 aa17.05■□□□□ 0.32
RPA3-206ENST00000463632 PCDH11XQ9BZA7 1347 aa17.05■□□□□ 0.32
RPA3-206ENST00000463632 PCDH11YQ9BZA8 1340 aa17.05■□□□□ 0.32
RPA3-206ENST00000463632 MYOM1P52179 1685 aa17.05■□□□□ 0.32
RPA3-206ENST00000463632 CARD14Q9BXL6 1004 aa17.05■□□□□ 0.32
RPA3-206ENST00000463632 NSD3Q9BZ95 1437 aa17.04■□□□□ 0.32
RPA3-206ENST00000463632 INSRP06213 1382 aa17.04■□□□□ 0.32
RPA3-206ENST00000463632 MSL1Q68DK7 614 aa17.04■□□□□ 0.32
RPA3-206ENST00000463632 TNNT2P45379 298 aaPredicted RBP17.03■□□□□ 0.32
RPA3-206ENST00000463632 BTAF1O14981 1849 aa17.03■□□□□ 0.32
RPA3-206ENST00000463632 ZNF784Q8NCA9 323 aaPredicted RBP17.02■□□□□ 0.32
RPA3-206ENST00000463632 NSD2O96028 1365 aa17.02■□□□□ 0.31
RPA3-206ENST00000463632 COL23A1Q86Y22 540 aaPredicted RBP17.01■□□□□ 0.31
RPA3-206ENST00000463632 SPG7Q9UQ90 795 aa17.01■□□□□ 0.31
RPA3-206ENST00000463632 HMGB2P26583 209 aaKnown RBP17■□□□□ 0.31
RPA3-206ENST00000463632 TIMELESSQ9UNS1 1208 aa17■□□□□ 0.31
RPA3-206ENST00000463632 PALLDQ8WX93 1383 aa17■□□□□ 0.31
RPA3-206ENST00000463632 CYP27B1O15528 508 aa16.99■□□□□ 0.31
RPA3-206ENST00000463632 SMARCC1Q92922 1105 aaPredicted RBP16.99■□□□□ 0.31
RPA3-206ENST00000463632 AK7Q96M32 723 aa16.99■□□□□ 0.31
RPA3-206ENST00000463632 FAM208AQ9UK61 1670 aaKnown RBP16.99■□□□□ 0.31
RPA3-206ENST00000463632 KIF24Q5T7B8 1368 aa16.99■□□□□ 0.31
RPA3-206ENST00000463632 PHF14O94880 888 aa16.98■□□□□ 0.31
RPA3-206ENST00000463632 NLGN2Q8NFZ4 835 aa16.98■□□□□ 0.31
RPA3-206ENST00000463632 PAPPAQ13219 1627 aa16.98■□□□□ 0.31
RPA3-206ENST00000463632 FLAD1Q8NFF5 587 aa16.97■□□□□ 0.31
RPA3-206ENST00000463632 EYA1Q99502 592 aa16.97■□□□□ 0.31
RPA3-206ENST00000463632 MAP3K5Q99683 1374 aa16.97■□□□□ 0.31
RPA3-206ENST00000463632 TMOD3Q9NYL9 352 aa16.96■□□□□ 0.31
RPA3-206ENST00000463632 PIGBQ92521 554 aa16.95■□□□□ 0.3
RPA3-206ENST00000463632 DOT1LQ8TEK3 1739 aa16.95■□□□□ 0.3
RPA3-206ENST00000463632 WASHC2AQ641Q2 1341 aa16.95■□□□□ 0.3
RPA3-206ENST00000463632 EIF4G2P78344 907 aaKnown RBP eCLIP16.94■□□□□ 0.3
RPA3-206ENST00000463632 CCER1Q8TC90 406 aaPredicted RBP16.94■□□□□ 0.3
RPA3-206ENST00000463632 POLKQ9UBT6 870 aa16.94■□□□□ 0.3
RPA3-206ENST00000463632 GRIN3BO60391 1043 aa16.92■□□□□ 0.3
RPA3-206ENST00000463632 HSPA5P11021 654 aaKnown RBP16.92■□□□□ 0.3
RPA3-206ENST00000463632 SMIM5Q71RC9 77 aa16.92■□□□□ 0.3
RPA3-206ENST00000463632 IFNL2Q8IZJ0 200 aa16.92■□□□□ 0.3
RPA3-206ENST00000463632 CLSPNQ9HAW4 1339 aa16.92■□□□□ 0.3
RPA3-206ENST00000463632 LOC102724428A0A0B4J2F2 783 aa16.91■□□□□ 0.3
RPA3-206ENST00000463632 SIK1P57059 783 aa16.91■□□□□ 0.3
RPA3-206ENST00000463632 EIF4A2Q14240 407 aaKnown RBP16.91■□□□□ 0.3
RPA3-206ENST00000463632 PANK3Q9H999 370 aa16.91■□□□□ 0.3
RPA3-206ENST00000463632 WWC3Q9ULE0 1092 aa16.91■□□□□ 0.3
RPA3-206ENST00000463632 RGPD2P0DJD1 1756 aa16.91■□□□□ 0.3
RPA3-206ENST00000463632 SENP3-EIF4A1A0A087X0R7 540 aa16.9■□□□□ 0.3
RPA3-206ENST00000463632 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.9■□□□□ 0.3
RPA3-206ENST00000463632 ATP6V1AP38606 617 aa16.9■□□□□ 0.3
RPA3-206ENST00000463632 NKX1-1Q15270 411 aaPredicted RBP16.9■□□□□ 0.3
RPA3-206ENST00000463632 ASAP1Q9ULH1 1129 aa16.9■□□□□ 0.3
RPA3-206ENST00000463632 GNPATO15228 680 aa16.89■□□□□ 0.29
RPA3-206ENST00000463632 PHKG2P15735 406 aa16.89■□□□□ 0.29
RPA3-206ENST00000463632 YBX3P16989 372 aaKnown RBP eCLIP16.89■□□□□ 0.29
RPA3-206ENST00000463632 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.89■□□□□ 0.29
RPA3-206ENST00000463632 GIGYF1O75420 1035 aaPredicted RBP16.88■□□□□ 0.29
RPA3-206ENST00000463632 MORC1Q86VD1 984 aa16.88■□□□□ 0.29
RPA3-206ENST00000463632 RBM42Q9BTD8 480 aaKnown RBP16.88■□□□□ 0.29
RPA3-206ENST00000463632 C1QTNF8P60827 252 aa16.87■□□□□ 0.29
RPA3-206ENST00000463632 PLEKHO1Q53GL0 409 aaPredicted RBP16.87■□□□□ 0.29
RPA3-206ENST00000463632 LINC00116Q8NCU8 138 aa16.87■□□□□ 0.29
RPA3-206ENST00000463632 CD2APQ9Y5K6 639 aa16.87■□□□□ 0.29
RPA3-206ENST00000463632 KIF20BQ96Q89 1820 aa16.86■□□□□ 0.29
RPA3-206ENST00000463632 AMIGO3Q86WK7 504 aa16.86■□□□□ 0.29
RPA3-206ENST00000463632 SHANK3Q9BYB0 1731 aa16.85■□□□□ 0.29
RPA3-206ENST00000463632 HSP90AB1P08238 724 aaKnown RBP16.85■□□□□ 0.29
RPA3-206ENST00000463632 SSFA2P28290 1259 aa16.85■□□□□ 0.29
RPA3-206ENST00000463632 ZNF530Q6P9A1 599 aaPredicted RBP16.85■□□□□ 0.29
RPA3-206ENST00000463632 ATG3Q9NT62 314 aa16.85■□□□□ 0.29
RPA3-206ENST00000463632 CABP4P57796 275 aa16.84■□□□□ 0.29
RPA3-206ENST00000463632 ITPK1Q13572 414 aa16.84■□□□□ 0.29
RPA3-206ENST00000463632 C1orf141Q5JVX7 400 aa16.84■□□□□ 0.29
RPA3-206ENST00000463632 KNSTRNQ9Y448 316 aa16.84■□□□□ 0.29
RPA3-206ENST00000463632 LY75O60449 1722 aa16.83■□□□□ 0.28
RPA3-206ENST00000463632 ZNF526Q8TF50 670 aaPredicted RBP16.82■□□□□ 0.28
RPA3-206ENST00000463632 RTCBQ9Y3I0 505 aaKnown RBP16.82■□□□□ 0.28
RPA3-206ENST00000463632 IGSF1Q8N6C5 1336 aa16.81■□□□□ 0.28
RPA3-206ENST00000463632 MTHFSP49914 203 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms