RNA–Protein interactions for RNA: ENST00000463184.1

VARS-221, Transcript of valyl-tRNA synthetase, humanhuman

TSL 2

Gene VARS, Length 619 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-221ENST00000463184 NBPF6Q5VWK0 638 aa27.69■■■□□ 2.02
VARS-221ENST00000463184 NBPF4Q96M43 638 aa27.69■■■□□ 2.02
VARS-221ENST00000463184 TFCP2L1Q9NZI6 479 aa27.69■■■□□ 2.02
VARS-221ENST00000463184 UTRNP46939 3433 aa27.69■■■□□ 2.02
VARS-221ENST00000463184 CGNL1Q0VF96 1302 aa27.68■■■□□ 2.02
VARS-221ENST00000463184 GGNBP2Q9H3C7 697 aa27.68■■■□□ 2.02
VARS-221ENST00000463184 PNPLA7Q6ZV29 1317 aa27.67■■■□□ 2.02
VARS-221ENST00000463184 MEGF6O75095 1541 aa27.67■■■□□ 2.02
VARS-221ENST00000463184 POLD1P28340 1107 aa27.67■■■□□ 2.02
VARS-221ENST00000463184 NSD2O96028 1365 aa27.66■■■□□ 2.02
VARS-221ENST00000463184 ZNF784Q8NCA9 323 aaPredicted RBP27.66■■■□□ 2.02
VARS-221ENST00000463184 QSER1Q2KHR3 1735 aa27.66■■■□□ 2.02
VARS-221ENST00000463184 RGPD2P0DJD1 1756 aa27.65■■■□□ 2.02
VARS-221ENST00000463184 USP47Q96K76 1375 aa27.65■■■□□ 2.02
VARS-221ENST00000463184 KCNQ4P56696 695 aa27.65■■■□□ 2.02
VARS-221ENST00000463184 CDCA8Q53HL2 280 aa27.65■■■□□ 2.02
VARS-221ENST00000463184 RAPGEF4Q8WZA2 1011 aa27.65■■■□□ 2.02
VARS-221ENST00000463184 SMG6Q86US8 1419 aaKnown RBP27.65■■■□□ 2.02
VARS-221ENST00000463184 DOT1LQ8TEK3 1739 aa27.64■■■□□ 2.01
VARS-221ENST00000463184 CCNL1Q9UK58 526 aaPredicted RBP27.63■■■□□ 2.01
VARS-221ENST00000463184 SHANK3Q9BYB0 1731 aa27.63■■■□□ 2.01
VARS-221ENST00000463184 LY75O60449 1722 aa27.61■■■□□ 2.01
VARS-221ENST00000463184 TATP17735 454 aaPredicted RBP27.61■■■□□ 2.01
VARS-221ENST00000463184 USHBP1Q8N6Y0 703 aa27.61■■■□□ 2.01
VARS-221ENST00000463184 GPR162Q16538 588 aa27.6■■■□□ 2.01
VARS-221ENST00000463184 CHD4Q14839 1912 aa27.6■■■□□ 2.01
VARS-221ENST00000463184 INSRP06213 1382 aa27.6■■■□□ 2.01
VARS-221ENST00000463184 KIF24Q5T7B8 1368 aa27.6■■■□□ 2.01
VARS-221ENST00000463184 HSP90AB2PQ58FF8 381 aa27.59■■■□□ 2.01
VARS-221ENST00000463184 HMGB2P26583 209 aaKnown RBP27.58■■■□□ 2.01
VARS-221ENST00000463184 KLHL34Q8N239 644 aa27.58■■■□□ 2.01
VARS-221ENST00000463184 PCGF6Q9BYE7 350 aa27.58■■■□□ 2.01
VARS-221ENST00000463184 FLT4P35916 1363 aa27.58■■■□□ 2.01
VARS-221ENST00000463184 COL24A1Q17RW2 1714 aa27.58■■■□□ 2.01
VARS-221ENST00000463184 PCDH11XQ9BZA7 1347 aa27.56■■■□□ 2
VARS-221ENST00000463184 PCDH11YQ9BZA8 1340 aa27.56■■■□□ 2
VARS-221ENST00000463184 TUBGCP6Q96RT7 1819 aa27.55■■■□□ 2
VARS-221ENST00000463184 COL23A1Q86Y22 540 aaPredicted RBP27.53■■■□□ 2
VARS-221ENST00000463184 MSH5O43196 834 aa27.52■■■□□ 2
VARS-221ENST00000463184 KIF20BQ96Q89 1820 aa27.51■■□□□ 1.99
VARS-221ENST00000463184 CARD14Q9BXL6 1004 aa27.51■■□□□ 1.99
VARS-221ENST00000463184 PELP1Q8IZL8 1130 aaKnown RBP27.49■■□□□ 1.99
VARS-221ENST00000463184 NLGN2Q8NFZ4 835 aa27.49■■□□□ 1.99
VARS-221ENST00000463184 CYP27B1O15528 508 aa27.48■■□□□ 1.99
VARS-221ENST00000463184 MPRIPQ6WCQ1 1025 aa27.48■■□□□ 1.99
VARS-221ENST00000463184 EMILIN1Q9Y6C2 1016 aa27.48■■□□□ 1.99
VARS-221ENST00000463184 FLAD1Q8NFF5 587 aa27.47■■□□□ 1.99
VARS-221ENST00000463184 NSD3Q9BZ95 1437 aa27.47■■□□□ 1.99
VARS-221ENST00000463184 PALLDQ8WX93 1383 aa27.47■■□□□ 1.99
VARS-221ENST00000463184 TIMELESSQ9UNS1 1208 aa27.46■■□□□ 1.99
VARS-221ENST00000463184 SMARCC1Q92922 1105 aaPredicted RBP27.45■■□□□ 1.98
VARS-221ENST00000463184 GOLGB1Q14789 3259 aaKnown RBP27.43■■□□□ 1.98
VARS-221ENST00000463184 PPM1GO15355 546 aaPredicted RBP27.43■■□□□ 1.98
VARS-221ENST00000463184 GRIN3BO60391 1043 aa27.42■■□□□ 1.98
VARS-221ENST00000463184 NKX1-1Q15270 411 aaPredicted RBP27.42■■□□□ 1.98
VARS-221ENST00000463184 MSL1Q68DK7 614 aa27.42■■□□□ 1.98
VARS-221ENST00000463184 SPG7Q9UQ90 795 aa27.42■■□□□ 1.98
VARS-221ENST00000463184 C5P01031 1676 aa27.42■■□□□ 1.98
VARS-221ENST00000463184 WASHC2AQ641Q2 1341 aa27.41■■□□□ 1.98
VARS-221ENST00000463184 C1QTNF8P60827 252 aa27.41■■□□□ 1.98
VARS-221ENST00000463184 NCAPD2Q15021 1401 aa27.41■■□□□ 1.98
VARS-221ENST00000463184 PIGBQ92521 554 aa27.39■■□□□ 1.98
VARS-221ENST00000463184 AK7Q96M32 723 aa27.38■■□□□ 1.97
VARS-221ENST00000463184 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.38■■□□□ 1.97
VARS-221ENST00000463184 CD2APQ9Y5K6 639 aa27.38■■□□□ 1.97
VARS-221ENST00000463184 PKD1L3Q7Z443 1732 aa27.38■■□□□ 1.97
VARS-221ENST00000463184 TAF1LQ8IZX4 1826 aa27.37■■□□□ 1.97
VARS-221ENST00000463184 YBX3P16989 372 aaKnown RBP eCLIP27.37■■□□□ 1.97
VARS-221ENST00000463184 EYA1Q99502 592 aa27.37■■□□□ 1.97
VARS-221ENST00000463184 ITGB4P16144 1822 aa27.36■■□□□ 1.97
VARS-221ENST00000463184 TOGARAM1Q9Y4F4 1720 aa27.36■■□□□ 1.97
VARS-221ENST00000463184 C4BP0C0L5 1744 aa27.34■■□□□ 1.97
VARS-221ENST00000463184 ANKRD26Q9UPS8 1709 aa27.34■■□□□ 1.97
VARS-221ENST00000463184 POLKQ9UBT6 870 aa27.34■■□□□ 1.97
VARS-221ENST00000463184 SENP3-EIF4A1A0A087X0R7 540 aa27.33■■□□□ 1.97
VARS-221ENST00000463184 MAP2P11137 1827 aaKnown RBP27.32■■□□□ 1.96
VARS-221ENST00000463184 LOC102724428A0A0B4J2F2 783 aa27.32■■□□□ 1.96
VARS-221ENST00000463184 GIGYF1O75420 1035 aaPredicted RBP27.32■■□□□ 1.96
VARS-221ENST00000463184 SIK1P57059 783 aa27.32■■□□□ 1.96
VARS-221ENST00000463184 IFNL2Q8IZJ0 200 aa27.32■■□□□ 1.96
VARS-221ENST00000463184 TMOD3Q9NYL9 352 aa27.32■■□□□ 1.96
VARS-221ENST00000463184 CLSPNQ9HAW4 1339 aa27.31■■□□□ 1.96
VARS-221ENST00000463184 SSFA2P28290 1259 aa27.3■■□□□ 1.96
VARS-221ENST00000463184 AMIGO3Q86WK7 504 aa27.3■■□□□ 1.96
VARS-221ENST00000463184 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.29■■□□□ 1.96
VARS-221ENST00000463184 PHF14O94880 888 aa27.29■■□□□ 1.96
VARS-221ENST00000463184 PHKG2P15735 406 aa27.29■■□□□ 1.96
VARS-221ENST00000463184 LINC00116Q8NCU8 138 aa27.28■■□□□ 1.96
VARS-221ENST00000463184 EIF4A2Q14240 407 aaKnown RBP27.27■■□□□ 1.96
VARS-221ENST00000463184 POLR3GLQ9BT43 218 aa27.27■■□□□ 1.96
VARS-221ENST00000463184 ASAP1Q9ULH1 1129 aa27.27■■□□□ 1.96
VARS-221ENST00000463184 PLEKHG2Q9H7P9 1386 aa27.26■■□□□ 1.95
VARS-221ENST00000463184 UBR3Q6ZT12 1888 aa27.26■■□□□ 1.95
VARS-221ENST00000463184 ATP6V1AP38606 617 aa27.25■■□□□ 1.95
VARS-221ENST00000463184 TNNT2P45379 298 aaPredicted RBP27.24■■□□□ 1.95
VARS-221ENST00000463184 SMIM5Q71RC9 77 aa27.24■■□□□ 1.95
VARS-221ENST00000463184 ITPK1Q13572 414 aa27.23■■□□□ 1.95
VARS-221ENST00000463184 GNPATO15228 680 aa27.22■■□□□ 1.95
VARS-221ENST00000463184 ATG3Q9NT62 314 aa27.22■■□□□ 1.95
VARS-221ENST00000463184 IGSF1Q8N6C5 1336 aa27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms