RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SYTL4Q96C24 671 aaPredicted RBP22.51■■□□□ 1.19
COL7A1-204ENST00000462475 NBPF4Q96M43 638 aa22.51■■□□□ 1.19
COL7A1-204ENST00000462475 FHDC1Q9C0D6 1143 aaPredicted RBP22.51■■□□□ 1.19
COL7A1-204ENST00000462475 PRIM1P49642 420 aaKnown RBP22.5■■□□□ 1.19
COL7A1-204ENST00000462475 AKT1S1Q96B36 256 aa22.49■■□□□ 1.19
COL7A1-204ENST00000462475 SMG6Q86US8 1419 aaKnown RBP22.48■■□□□ 1.19
COL7A1-204ENST00000462475 KAT6BQ8WYB5 2073 aa22.48■■□□□ 1.19
COL7A1-204ENST00000462475 KIF20BQ96Q89 1820 aa22.48■■□□□ 1.19
COL7A1-204ENST00000462475 KCNQ4P56696 695 aa22.48■■□□□ 1.19
COL7A1-204ENST00000462475 CDCA8Q53HL2 280 aa22.48■■□□□ 1.19
COL7A1-204ENST00000462475 SLC27A3Q5K4L6 730 aa22.48■■□□□ 1.19
COL7A1-204ENST00000462475 SYT17Q9BSW7 474 aa22.48■■□□□ 1.19
COL7A1-204ENST00000462475 HSP90AB2PQ58FF8 381 aa22.47■■□□□ 1.19
COL7A1-204ENST00000462475 CARD14Q9BXL6 1004 aa22.46■■□□□ 1.19
COL7A1-204ENST00000462475 INSRP06213 1382 aa22.46■■□□□ 1.19
COL7A1-204ENST00000462475 NSD3Q9BZ95 1437 aa22.46■■□□□ 1.19
COL7A1-204ENST00000462475 ARXQ96QS3 562 aa22.45■■□□□ 1.18
COL7A1-204ENST00000462475 FLT4P35916 1363 aa22.45■■□□□ 1.18
COL7A1-204ENST00000462475 PNPLA7Q6ZV29 1317 aa22.44■■□□□ 1.18
COL7A1-204ENST00000462475 RAPGEF4Q8WZA2 1011 aa22.44■■□□□ 1.18
COL7A1-204ENST00000462475 CGNL1Q0VF96 1302 aa22.43■■□□□ 1.18
COL7A1-204ENST00000462475 LY75O60449 1722 aa22.43■■□□□ 1.18
COL7A1-204ENST00000462475 KIF24Q5T7B8 1368 aa22.42■■□□□ 1.18
COL7A1-204ENST00000462475 TATP17735 454 aaPredicted RBP22.42■■□□□ 1.18
COL7A1-204ENST00000462475 QSER1Q2KHR3 1735 aa22.42■■□□□ 1.18
COL7A1-204ENST00000462475 EMILIN1Q9Y6C2 1016 aa22.41■■□□□ 1.18
COL7A1-204ENST00000462475 TUBGCP6Q96RT7 1819 aa22.41■■□□□ 1.18
COL7A1-204ENST00000462475 MAP3K5Q99683 1374 aa22.4■■□□□ 1.18
COL7A1-204ENST00000462475 TFCP2L1Q9NZI6 479 aa22.4■■□□□ 1.18
COL7A1-204ENST00000462475 CCNL1Q9UK58 526 aaPredicted RBP22.4■■□□□ 1.18
COL7A1-204ENST00000462475 SLC16A10Q8TF71 515 aa22.39■■□□□ 1.17
COL7A1-204ENST00000462475 TIMELESSQ9UNS1 1208 aa22.39■■□□□ 1.17
COL7A1-204ENST00000462475 PCDH11XQ9BZA7 1347 aa22.38■■□□□ 1.17
COL7A1-204ENST00000462475 PCDH11YQ9BZA8 1340 aa22.38■■□□□ 1.17
COL7A1-204ENST00000462475 COL24A1Q17RW2 1714 aa22.35■■□□□ 1.17
COL7A1-204ENST00000462475 NCAPD2Q15021 1401 aa22.35■■□□□ 1.17
COL7A1-204ENST00000462475 CYP27B1O15528 508 aa22.35■■□□□ 1.17
COL7A1-204ENST00000462475 PPM1GO15355 546 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-204ENST00000462475 POLD1P28340 1107 aa22.34■■□□□ 1.17
COL7A1-204ENST00000462475 KLHL34Q8N239 644 aa22.34■■□□□ 1.17
COL7A1-204ENST00000462475 PCGF6Q9BYE7 350 aa22.34■■□□□ 1.17
COL7A1-204ENST00000462475 ANKRD26Q9UPS8 1709 aa22.34■■□□□ 1.17
COL7A1-204ENST00000462475 CLSPNQ9HAW4 1339 aa22.33■■□□□ 1.17
COL7A1-204ENST00000462475 TOGARAM1Q9Y4F4 1720 aa22.33■■□□□ 1.17
COL7A1-204ENST00000462475 PKD1L3Q7Z443 1732 aa22.32■■□□□ 1.16
COL7A1-204ENST00000462475 PALLDQ8WX93 1383 aa22.32■■□□□ 1.16
COL7A1-204ENST00000462475 GOLGB1Q14789 3259 aaKnown RBP22.32■■□□□ 1.16
COL7A1-204ENST00000462475 MPRIPQ6WCQ1 1025 aa22.31■■□□□ 1.16
COL7A1-204ENST00000462475 POLR3GLQ9BT43 218 aa22.31■■□□□ 1.16
COL7A1-204ENST00000462475 COL23A1Q86Y22 540 aaPredicted RBP22.3■■□□□ 1.16
COL7A1-204ENST00000462475 WASHC2AQ641Q2 1341 aa22.3■■□□□ 1.16
COL7A1-204ENST00000462475 ZNF784Q8NCA9 323 aaPredicted RBP22.29■■□□□ 1.16
COL7A1-204ENST00000462475 C5P01031 1676 aa22.29■■□□□ 1.16
COL7A1-204ENST00000462475 MSH5O43196 834 aa22.28■■□□□ 1.16
COL7A1-204ENST00000462475 EYA1Q99502 592 aa22.28■■□□□ 1.16
COL7A1-204ENST00000462475 NLGN2Q8NFZ4 835 aa22.27■■□□□ 1.16
COL7A1-204ENST00000462475 POLKQ9UBT6 870 aa22.27■■□□□ 1.16
COL7A1-204ENST00000462475 GPR162Q16538 588 aa22.26■■□□□ 1.15
COL7A1-204ENST00000462475 MSL1Q68DK7 614 aa22.26■■□□□ 1.15
COL7A1-204ENST00000462475 SPG7Q9UQ90 795 aa22.25■■□□□ 1.15
COL7A1-204ENST00000462475 TNNT2P45379 298 aaPredicted RBP22.24■■□□□ 1.15
COL7A1-204ENST00000462475 NKX1-1Q15270 411 aaPredicted RBP22.24■■□□□ 1.15
COL7A1-204ENST00000462475 PIGBQ92521 554 aa22.24■■□□□ 1.15
COL7A1-204ENST00000462475 ITGB4P16144 1822 aa22.24■■□□□ 1.15
COL7A1-204ENST00000462475 PELP1Q8IZL8 1130 aaKnown RBP22.23■■□□□ 1.15
COL7A1-204ENST00000462475 SMARCC1Q92922 1105 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-204ENST00000462475 MAP2P11137 1827 aaKnown RBP22.22■■□□□ 1.15
COL7A1-204ENST00000462475 TAF1LQ8IZX4 1826 aa22.22■■□□□ 1.15
COL7A1-204ENST00000462475 HSPA5P11021 654 aaKnown RBP22.22■■□□□ 1.15
COL7A1-204ENST00000462475 EIF4A2Q14240 407 aaKnown RBP22.22■■□□□ 1.15
COL7A1-204ENST00000462475 AMIGO3Q86WK7 504 aa22.22■■□□□ 1.15
COL7A1-204ENST00000462475 C4BP0C0L5 1744 aa22.22■■□□□ 1.15
COL7A1-204ENST00000462475 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.21■■□□□ 1.15
COL7A1-204ENST00000462475 CHD4Q14839 1912 aa22.21■■□□□ 1.15
COL7A1-204ENST00000462475 EIF4G2P78344 907 aaKnown RBP eCLIP22.2■■□□□ 1.14
COL7A1-204ENST00000462475 PHKG2P15735 406 aa22.19■■□□□ 1.14
COL7A1-204ENST00000462475 FLAD1Q8NFF5 587 aa22.19■■□□□ 1.14
COL7A1-204ENST00000462475 AK7Q96M32 723 aa22.19■■□□□ 1.14
COL7A1-204ENST00000462475 SMIM5Q71RC9 77 aa22.18■■□□□ 1.14
COL7A1-204ENST00000462475 PANK3Q9H999 370 aa22.18■■□□□ 1.14
COL7A1-204ENST00000462475 TMOD3Q9NYL9 352 aa22.18■■□□□ 1.14
COL7A1-204ENST00000462475 LOC102724428A0A0B4J2F2 783 aa22.17■■□□□ 1.14
COL7A1-204ENST00000462475 HMGB2P26583 209 aaKnown RBP22.17■■□□□ 1.14
COL7A1-204ENST00000462475 SIK1P57059 783 aa22.17■■□□□ 1.14
COL7A1-204ENST00000462475 IFNL2Q8IZJ0 200 aa22.17■■□□□ 1.14
COL7A1-204ENST00000462475 IGSF1Q8N6C5 1336 aa22.16■■□□□ 1.14
COL7A1-204ENST00000462475 PHF14O94880 888 aa22.16■■□□□ 1.14
COL7A1-204ENST00000462475 YBX3P16989 372 aaKnown RBP eCLIP22.16■■□□□ 1.14
COL7A1-204ENST00000462475 LINC00116Q8NCU8 138 aa22.16■■□□□ 1.14
COL7A1-204ENST00000462475 ASAP1Q9ULH1 1129 aa22.16■■□□□ 1.14
COL7A1-204ENST00000462475 PLEKHG2Q9H7P9 1386 aa22.14■■□□□ 1.14
COL7A1-204ENST00000462475 UBR3Q6ZT12 1888 aa22.14■■□□□ 1.13
COL7A1-204ENST00000462475 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.14■■□□□ 1.13
COL7A1-204ENST00000462475 ITPK1Q13572 414 aa22.13■■□□□ 1.13
COL7A1-204ENST00000462475 SSFA2P28290 1259 aa22.11■■□□□ 1.13
COL7A1-204ENST00000462475 CCER1Q8TC90 406 aaPredicted RBP22.11■■□□□ 1.13
COL7A1-204ENST00000462475 ATG3Q9NT62 314 aa22.11■■□□□ 1.13
COL7A1-204ENST00000462475 CD2APQ9Y5K6 639 aa22.11■■□□□ 1.13
COL7A1-204ENST00000462475 ATP6V1AP38606 617 aa22.1■■□□□ 1.13
COL7A1-204ENST00000462475 KDRP35968 1356 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms