RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 UTRNP46939 3433 aa17.28■□□□□ 0.36
GPNMB-204ENST00000459927 PNPLA7Q6ZV29 1317 aa17.28■□□□□ 0.36
GPNMB-204ENST00000459927 TMF1P82094 1093 aa17.28■□□□□ 0.36
GPNMB-204ENST00000459927 MAP3K5Q99683 1374 aa17.27■□□□□ 0.35
GPNMB-204ENST00000459927 CGNL1Q0VF96 1302 aa17.26■□□□□ 0.35
GPNMB-204ENST00000459927 PAPPAQ13219 1627 aa17.26■□□□□ 0.35
GPNMB-204ENST00000459927 POLD1P28340 1107 aa17.26■□□□□ 0.35
GPNMB-204ENST00000459927 GPR162Q16538 588 aa17.26■□□□□ 0.35
GPNMB-204ENST00000459927 HSP90AB2PQ58FF8 381 aa17.26■□□□□ 0.35
GPNMB-204ENST00000459927 USHBP1Q8N6Y0 703 aa17.25■□□□□ 0.35
GPNMB-204ENST00000459927 CCNL1Q9UK58 526 aaPredicted RBP17.25■□□□□ 0.35
GPNMB-204ENST00000459927 TATP17735 454 aaPredicted RBP17.24■□□□□ 0.35
GPNMB-204ENST00000459927 RAPGEF4Q8WZA2 1011 aa17.24■□□□□ 0.35
GPNMB-204ENST00000459927 NSD2O96028 1365 aa17.24■□□□□ 0.35
GPNMB-204ENST00000459927 RGPD2P0DJD1 1756 aa17.23■□□□□ 0.35
GPNMB-204ENST00000459927 CDCA8Q53HL2 280 aa17.23■□□□□ 0.35
GPNMB-204ENST00000459927 COL23A1Q86Y22 540 aaPredicted RBP17.23■□□□□ 0.35
GPNMB-204ENST00000459927 CARD14Q9BXL6 1004 aa17.23■□□□□ 0.35
GPNMB-204ENST00000459927 KLHL34Q8N239 644 aa17.22■□□□□ 0.35
GPNMB-204ENST00000459927 FAM208AQ9UK61 1670 aaKnown RBP17.21■□□□□ 0.35
GPNMB-204ENST00000459927 RTL1A6NKG5 1358 aa17.21■□□□□ 0.35
GPNMB-204ENST00000459927 CHD4Q14839 1912 aa17.21■□□□□ 0.35
GPNMB-204ENST00000459927 MEGF6O75095 1541 aa17.21■□□□□ 0.34
GPNMB-204ENST00000459927 INSRP06213 1382 aa17.2■□□□□ 0.34
GPNMB-204ENST00000459927 USP47Q96K76 1375 aa17.2■□□□□ 0.34
GPNMB-204ENST00000459927 MSH5O43196 834 aa17.2■□□□□ 0.34
GPNMB-204ENST00000459927 HMGB2P26583 209 aaKnown RBP17.19■□□□□ 0.34
GPNMB-204ENST00000459927 MPRIPQ6WCQ1 1025 aa17.19■□□□□ 0.34
GPNMB-204ENST00000459927 NLGN2Q8NFZ4 835 aa17.19■□□□□ 0.34
GPNMB-204ENST00000459927 CYP27B1O15528 508 aa17.18■□□□□ 0.34
GPNMB-204ENST00000459927 TRIM26Q12899 539 aaPredicted RBP17.18■□□□□ 0.34
GPNMB-204ENST00000459927 LY75O60449 1722 aa17.17■□□□□ 0.34
GPNMB-204ENST00000459927 QSER1Q2KHR3 1735 aa17.17■□□□□ 0.34
GPNMB-204ENST00000459927 PELP1Q8IZL8 1130 aaKnown RBP17.17■□□□□ 0.34
GPNMB-204ENST00000459927 KIF24Q5T7B8 1368 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 COL24A1Q17RW2 1714 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 C1QTNF8P60827 252 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 FLAD1Q8NFF5 587 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 EMILIN1Q9Y6C2 1016 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 PCDH11XQ9BZA7 1347 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 PCDH11YQ9BZA8 1340 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 SHANK3Q9BYB0 1731 aa17.16■□□□□ 0.34
GPNMB-204ENST00000459927 SMG6Q86US8 1419 aaKnown RBP17.15■□□□□ 0.34
GPNMB-204ENST00000459927 NKX1-1Q15270 411 aaPredicted RBP17.15■□□□□ 0.34
GPNMB-204ENST00000459927 FLT4P35916 1363 aa17.15■□□□□ 0.34
GPNMB-204ENST00000459927 DOT1LQ8TEK3 1739 aa17.14■□□□□ 0.33
GPNMB-204ENST00000459927 PPM1GO15355 546 aaPredicted RBP17.14■□□□□ 0.33
GPNMB-204ENST00000459927 GRIN3BO60391 1043 aa17.14■□□□□ 0.33
GPNMB-204ENST00000459927 PIGBQ92521 554 aa17.14■□□□□ 0.33
GPNMB-204ENST00000459927 SMARCC1Q92922 1105 aaPredicted RBP17.14■□□□□ 0.33
GPNMB-204ENST00000459927 YBX3P16989 372 aaKnown RBP eCLIP17.13■□□□□ 0.33
GPNMB-204ENST00000459927 MSL1Q68DK7 614 aa17.13■□□□□ 0.33
GPNMB-204ENST00000459927 TIMELESSQ9UNS1 1208 aa17.13■□□□□ 0.33
GPNMB-204ENST00000459927 WASHC2AQ641Q2 1341 aa17.13■□□□□ 0.33
GPNMB-204ENST00000459927 EYA1Q99502 592 aa17.12■□□□□ 0.33
GPNMB-204ENST00000459927 SPG7Q9UQ90 795 aa17.12■□□□□ 0.33
GPNMB-204ENST00000459927 CD2APQ9Y5K6 639 aa17.12■□□□□ 0.33
GPNMB-204ENST00000459927 TUBGCP6Q96RT7 1819 aa17.12■□□□□ 0.33
GPNMB-204ENST00000459927 PALLDQ8WX93 1383 aa17.11■□□□□ 0.33
GPNMB-204ENST00000459927 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.1■□□□□ 0.33
GPNMB-204ENST00000459927 POLKQ9UBT6 870 aa17.1■□□□□ 0.33
GPNMB-204ENST00000459927 SMIM5Q71RC9 77 aa17.09■□□□□ 0.33
GPNMB-204ENST00000459927 AMIGO3Q86WK7 504 aa17.09■□□□□ 0.33
GPNMB-204ENST00000459927 NSD3Q9BZ95 1437 aa17.07■□□□□ 0.32
GPNMB-204ENST00000459927 GOLGB1Q14789 3259 aaKnown RBP17.07■□□□□ 0.32
GPNMB-204ENST00000459927 SENP3-EIF4A1A0A087X0R7 540 aa17.07■□□□□ 0.32
GPNMB-204ENST00000459927 AK7Q96M32 723 aa17.07■□□□□ 0.32
GPNMB-204ENST00000459927 LOC102724428A0A0B4J2F2 783 aa17.06■□□□□ 0.32
GPNMB-204ENST00000459927 SIK1P57059 783 aa17.06■□□□□ 0.32
GPNMB-204ENST00000459927 IFNL2Q8IZJ0 200 aa17.06■□□□□ 0.32
GPNMB-204ENST00000459927 ASAP1Q9ULH1 1129 aa17.06■□□□□ 0.32
GPNMB-204ENST00000459927 MAP2P11137 1827 aaKnown RBP17.05■□□□□ 0.32
GPNMB-204ENST00000459927 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.05■□□□□ 0.32
GPNMB-204ENST00000459927 GIGYF1O75420 1035 aaPredicted RBP17.05■□□□□ 0.32
GPNMB-204ENST00000459927 PHKG2P15735 406 aa17.05■□□□□ 0.32
GPNMB-204ENST00000459927 TMOD3Q9NYL9 352 aa17.05■□□□□ 0.32
GPNMB-204ENST00000459927 ITGB4P16144 1822 aa17.05■□□□□ 0.32
GPNMB-204ENST00000459927 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
GPNMB-204ENST00000459927 PHF14O94880 888 aa17.04■□□□□ 0.32
GPNMB-204ENST00000459927 LINC00116Q8NCU8 138 aa17.04■□□□□ 0.32
GPNMB-204ENST00000459927 NCAPD2Q15021 1401 aa17.04■□□□□ 0.32
GPNMB-204ENST00000459927 TAF1LQ8IZX4 1826 aa17.03■□□□□ 0.32
GPNMB-204ENST00000459927 SSFA2P28290 1259 aa17.03■□□□□ 0.32
GPNMB-204ENST00000459927 ATP6V1AP38606 617 aa17.03■□□□□ 0.32
GPNMB-204ENST00000459927 TNNT2P45379 298 aaPredicted RBP17.03■□□□□ 0.32
GPNMB-204ENST00000459927 EIF4A2Q14240 407 aaKnown RBP17.03■□□□□ 0.32
GPNMB-204ENST00000459927 ATG3Q9NT62 314 aa17.03■□□□□ 0.32
GPNMB-204ENST00000459927 C5P01031 1676 aa17.03■□□□□ 0.32
GPNMB-204ENST00000459927 ITPK1Q13572 414 aa17.02■□□□□ 0.32
GPNMB-204ENST00000459927 POLR3GLQ9BT43 218 aa17.02■□□□□ 0.32
GPNMB-204ENST00000459927 PCGF6Q9BYE7 350 aa17■□□□□ 0.31
GPNMB-204ENST00000459927 PANK3Q9H999 370 aa17■□□□□ 0.31
GPNMB-204ENST00000459927 C4BP0C0L5 1744 aa16.99■□□□□ 0.31
GPNMB-204ENST00000459927 ERVV-2B6SEH9 535 aa16.99■□□□□ 0.31
GPNMB-204ENST00000459927 TOGARAM1Q9Y4F4 1720 aa16.99■□□□□ 0.31
GPNMB-204ENST00000459927 GNPATO15228 680 aa16.98■□□□□ 0.31
GPNMB-204ENST00000459927 TRAPPC3LQ5T215 181 aa16.98■□□□□ 0.31
GPNMB-204ENST00000459927 PKD1L3Q7Z443 1732 aa16.98■□□□□ 0.31
GPNMB-204ENST00000459927 CLSPNQ9HAW4 1339 aa16.97■□□□□ 0.31
GPNMB-204ENST00000459927 PLEKHO1Q53GL0 409 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms